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authorMarvin Bertin <marvin.bertin@gmail.com>2017-10-10 15:20:08 -0700
committerMarvin Bertin <marvin.bertin@gmail.com>2017-10-10 15:20:08 -0700
commit9c95eb7247cb0818af9a9e4afe884698360f994c (patch)
tree0671a39174899dce09ade3c571ef21bab6172e0e
parent17edd2f48d93a2a96bafd5f10820b41b7416d177 (diff)
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fix exports with EligibilityArms
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala4
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/fakes/entities/export.scala4
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala4
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala4
-rw-r--r--src/test/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/ExportFormatSuite.scala6
5 files changed, 11 insertions, 11 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala
index 385bbbe..8376e34 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala
@@ -3,12 +3,12 @@ package xyz.driver.pdsuidomain.entities.export.trial
import xyz.driver.entities.labels.Label
import xyz.driver.pdsuicommon.domain._
import xyz.driver.pdsuicommon.logging._
-import xyz.driver.pdsuidomain.entities.{Arm, Criterion}
+import xyz.driver.pdsuidomain.entities.{Criterion, EligibilityArm}
final case class ExportTrialLabelCriterion(criterionId: LongId[Criterion],
value: Option[Boolean],
labelId: LongId[Label],
- armIds: Set[LongId[Arm]],
+ armIds: Set[LongId[EligibilityArm]],
criteria: String,
isCompound: Boolean,
isDefining: Boolean)
diff --git a/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/export.scala b/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/export.scala
index 7221d28..5febd8f 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/export.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/export.scala
@@ -2,7 +2,7 @@ package xyz.driver.pdsuidomain.fakes.entities
import xyz.driver.entities.labels.Label
import xyz.driver.pdsuidomain.entities.export.trial._
-import xyz.driver.pdsuidomain.entities.{Arm, Criterion, EligibilityArm, Trial}
+import xyz.driver.pdsuidomain.entities.{Criterion, EligibilityArm, Trial}
object export {
import common._
@@ -16,7 +16,7 @@ object export {
criterionId = nextLongId[Criterion],
value = nextOption[Boolean](nextBoolean()),
labelId = nextLongId[Label],
- armIds = setOf(nextLongId[Arm]),
+ armIds = setOf(nextLongId[EligibilityArm]),
criteria = nextString(100),
isCompound = nextBoolean(),
isDefining = nextBoolean()
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
index 8a67469..1c4b6b4 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
@@ -5,7 +5,7 @@ import xyz.driver.entities.labels.Label
import xyz.driver.formats.json.labels._
import xyz.driver.pdsuidomain.entities.export.patient._
import xyz.driver.pdsuidomain.entities.export.trial.{ExportTrialArm, ExportTrialLabelCriterion, ExportTrialWithLabels}
-import xyz.driver.pdsuidomain.entities.{Arm, Criterion}
+import xyz.driver.pdsuidomain.entities.{Criterion, EligibilityArm}
object export {
import DefaultJsonProtocol._
@@ -68,7 +68,7 @@ object export {
longIdFormat[Criterion].read(criterionId),
value,
longIdFormat[Label].read(labelId),
- armIdsVector.map(longIdFormat[Arm].read).toSet,
+ armIdsVector.map(longIdFormat[EligibilityArm].read).toSet,
criterionText,
isCompound,
isDefining
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala
index 517b563..0431d95 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala
@@ -12,7 +12,7 @@ import xyz.driver.pdsuicommon.auth.AuthenticatedRequestContext
import xyz.driver.pdsuicommon.db._
import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId}
import xyz.driver.pdsuidomain.entities.export.trial.{ExportTrialArm, ExportTrialLabelCriterion, ExportTrialWithLabels}
-import xyz.driver.pdsuidomain.entities.{Arm, Criterion, EligibilityArm, Trial}
+import xyz.driver.pdsuidomain.entities.{Criterion, EligibilityArm, Trial}
import xyz.driver.pdsuidomain.services.TrialService
import scala.concurrent.Future
@@ -81,7 +81,7 @@ class FakeTrialService extends TrialService {
LongId[Criterion](generators.nextInt(999999).toLong),
generators.nextOption(generators.nextBoolean()),
LongId[Label](generators.nextInt(999999).toLong),
- generators.setOf(LongId[Arm](generators.nextInt(999999).toLong)),
+ generators.setOf(LongId[EligibilityArm](generators.nextInt(999999).toLong)),
generators.nextName().value,
generators.nextBoolean(),
generators.nextBoolean()
diff --git a/src/test/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/ExportFormatSuite.scala b/src/test/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/ExportFormatSuite.scala
index 41d7825..3eaf93f 100644
--- a/src/test/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/ExportFormatSuite.scala
+++ b/src/test/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/ExportFormatSuite.scala
@@ -81,8 +81,8 @@ class ExportFormatSuite extends FlatSpec with Matchers {
"Json format for ApiExportTrialWithLabels" should "read and write correct JSON" in {
import xyz.driver.pdsuidomain.entities.export.trial._
val arms = List(
- ExportTrialArm(armId = LongId(1), armName = "arm 1", diseaseList = Seq("Breast")),
- ExportTrialArm(armId = LongId(2), armName = "arm 2", diseaseList = Seq("Breast"))
+ ExportTrialArm(armId = LongId(1), armName = "arm 1"),
+ ExportTrialArm(armId = LongId(2), armName = "arm 2")
)
val criteriaList = List(
ExportTrialLabelCriterion(
@@ -116,7 +116,7 @@ class ExportFormatSuite extends FlatSpec with Matchers {
val writtenJson = trialWithLabelsFormat.write(trialWithLabels)
writtenJson should be(
"""{"nctId":"NCT000001","trialId":"40892a07-c638-49d2-9795-1edfefbbcc7c","lastReviewed":"2017-08-10T18:00Z",
- "labelVersion":1,"arms":[{"armId":1,"armName":"arm 1", "diseaseList":["Breast"]},{"armId":2,"armName":"arm 2", "diseaseList":["Breast"]}],"criteria":[
+ "labelVersion":1,"arms":[{"armId":1,"armName":"arm 1"},{"armId":2,"armName":"arm 2"}],"criteria":[
{"value":"Yes","labelId":21,"criterionId":10,"criterionText":"criteria 10 text","armIds":[1,2],"isCompound":false,"isDefining":false},
{"value":"Unknown","labelId":21,"criterionId":11,"criterionText":"criteria 11 text","armIds":[2],"isCompound":true,"isDefining":false}]}""".parseJson)
}