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package xyz.driver.pdsuidomain.entities
import java.time.LocalDateTime
import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId, StringId, UuidId}
import xyz.driver.pdsuicommon.logging._
object PatientCriterion {
implicit def toPhiString(x: PatientCriterion): PhiString = {
import x._
phi"PatientCriterion(id=$id, patientLabelId=$patientLabelId, trialId=${Unsafe(trialId)}, nctId=${Unsafe(nctId)}, " +
phi"criterionId=$criterionId, criterionValue=${Unsafe(criterionValue)}, " +
phi"isImplicitMatch=$criterionIsDefining), criterionIsDefining=${Unsafe(criterionIsDefining)}, " +
phi"eligibilityStatus=${Unsafe(eligibilityStatus)}, verifiedEligibilityStatus=${Unsafe(verifiedEligibilityStatus)}, " +
phi"isVerified=${Unsafe(isVerified)}, lastUpdate=${Unsafe(lastUpdate)}"
}
/**
* @see https://driverinc.atlassian.net/wiki/display/MTCH/EV+Business+Process
*/
def getEligibilityStatus(criterionValue: Option[Boolean],
primaryValue: Option[FuzzyValue]): Option[FuzzyValue] = {
primaryValue match {
case None => None
case Some(FuzzyValue.Maybe) => Some(FuzzyValue.Maybe)
case Some(_) if criterionValue.isEmpty => Some(FuzzyValue.Maybe)
case Some(status) => Some(FuzzyValue.fromBoolean(
FuzzyValue.fromBoolean(criterionValue.getOrElse(
throw new IllegalArgumentException("Criterion should not be empty"))
) == status
))
}
}
}
/**
* @param eligibilityStatus - a value, that selects an eligibility verifier (EV)
* @param verifiedEligibilityStatus - a copy of eligibilityStatus, when a patient goes to routes curator (RC)
* @param isVerified - is EV selected the eligibilityStatus?
*/
final case class PatientCriterion(id: LongId[PatientCriterion],
patientLabelId: LongId[PatientLabel],
trialId: Long,
nctId: StringId[Trial],
criterionId: LongId[Criterion],
criterionText: String,
criterionValue: Option[Boolean],
criterionIsDefining: Boolean,
eligibilityStatus: Option[FuzzyValue],
verifiedEligibilityStatus: Option[FuzzyValue],
isVerified: Boolean,
isVisible: Boolean,
lastUpdate: LocalDateTime) {
def isIneligible: Boolean = eligibilityStatus.contains(FuzzyValue.No) && isVerified
}
object PatientTrialArm {
implicit def toPhiString(x: PatientTrialArm): PhiString = {
import x._
phi"PatientTrialArm(armId=$armId, trialArmGroupId=$trialArmGroupId)"
}
}
final case class PatientTrialArm(armId: LongId[Arm], trialArmGroupId: LongId[PatientTrialArmGroup])
object PatientEligibleTrial {
implicit def toPhiString(x: PatientEligibleTrial): PhiString = {
import x._
phi"PatientEligibleTrial(id=$id, patientId=$patientId, trialId=$trialId, hypothesisId=$hypothesisId)"
}
}
final case class PatientEligibleTrial(id: UuidId[PatientEligibleTrial],
patientId: UuidId[Patient],
trialId: StringId[Trial],
hypothesisId: UuidId[Hypothesis])
object PatientTrialArmGroup {
implicit def toPhiString(x: PatientTrialArmGroup): PhiString = {
import x._
phi"PatientTrialArmGroup(id=$id, eligibleTrialId=$eligibleTrialId, " +
phi"eligibilityStatus=${Unsafe(eligibilityStatus)}, isVerified=$isVerified)"
}
/**
* @see https://driverinc.atlassian.net/wiki/display/DMPD/EV+Business+Process
*/
def getEligibilityStatusForEvToRc(criterionList: List[(Option[Boolean], Option[FuzzyValue])]): Option[FuzzyValue] = {
def isEligible = {
// Eligible, if for all (verified for EV) label-criteria eligibilityStatus=NULL or YES and at least one has status=YES
// If method executes from PatientService (when EV submit patient) need to check value PatientCriterion.isVerified
val verifiedList = criterionList.filter { case (isVerifiedOpt, _) => isVerifiedOpt.isEmpty || isVerifiedOpt.get }
verifiedList.forall { case (_, eligibilityStatus) =>
eligibilityStatus.isEmpty || eligibilityStatus.contains(FuzzyValue.Yes)
} && verifiedList.exists { case (_, eligibilityStatus) => eligibilityStatus.contains(FuzzyValue.Yes) }
}
if (criterionList.exists { case (isVerified, eligibilityStatus) =>
eligibilityStatus.contains(FuzzyValue.No) && (isVerified.isEmpty || isVerified.get)
}) { Some(FuzzyValue.No)
} else if (criterionList.forall { case (_, eligibilityStatus) => eligibilityStatus.isEmpty }) {
None
} else if (isEligible) {
Some(FuzzyValue.Yes)
} else {
Some(FuzzyValue.Maybe)
}
}
/**
* @see https://driverinc.atlassian.net/wiki/display/DMPD/EV+Business+Process
*/
def getEligibilityStatusForRc(criterionList: TraversableOnce[PatientCriterion]): Option[FuzzyValue] = {
def isEligible: Boolean = criterionList.forall(_.verifiedEligibilityStatus.contains(FuzzyValue.Yes))
def isIneligible: Boolean = criterionList.exists(_.verifiedEligibilityStatus.contains(FuzzyValue.No))
def isUnknown: Boolean = criterionList.forall(_.verifiedEligibilityStatus.isEmpty)
if (isEligible) Some(FuzzyValue.Yes)
else if (isIneligible) Some(FuzzyValue.No)
else if (isUnknown) None
else Some(FuzzyValue.Maybe)
}
}
final case class PatientTrialArmGroup(id: LongId[PatientTrialArmGroup],
eligibleTrialId: UuidId[PatientEligibleTrial],
eligibilityStatus: Option[FuzzyValue],
isVerified: Boolean)
object PatientTrialArmGroupView {
implicit def toPhiString(x: PatientTrialArmGroupView): PhiString = {
import x._
phi"PatientTrialArmGroupView(id=$id, patientId=$patientId, trialId=$trialId, hypothesisId=$hypothesisId, " +
phi"eligibilityStatus=${Unsafe(eligibilityStatus)}, isVerified=$isVerified)"
}
}
final case class PatientTrialArmGroupView(id: LongId[PatientTrialArmGroup],
patientId: UuidId[Patient],
trialId: StringId[Trial],
hypothesisId: UuidId[Hypothesis],
eligibilityStatus: Option[FuzzyValue],
isVerified: Boolean) {
def applyTo(trialArmGroup: PatientTrialArmGroup) = {
trialArmGroup.copy(
eligibilityStatus = this.eligibilityStatus,
isVerified = this.isVerified
)
}
}
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