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/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.spark.ml.classification
import org.apache.spark.SparkFunSuite
import org.apache.spark.ml.attribute.NominalAttribute
import org.apache.spark.ml.feature.StringIndexer
import org.apache.spark.ml.param.{ParamMap, ParamsSuite}
import org.apache.spark.ml.util.{MetadataUtils, MLTestingUtils}
import org.apache.spark.mllib.classification.LogisticRegressionSuite._
import org.apache.spark.mllib.classification.LogisticRegressionWithLBFGS
import org.apache.spark.mllib.evaluation.MulticlassMetrics
import org.apache.spark.mllib.linalg.Vectors
import org.apache.spark.mllib.regression.LabeledPoint
import org.apache.spark.mllib.util.MLlibTestSparkContext
import org.apache.spark.mllib.util.TestingUtils._
import org.apache.spark.rdd.RDD
import org.apache.spark.sql.DataFrame
import org.apache.spark.sql.types.Metadata
class OneVsRestSuite extends SparkFunSuite with MLlibTestSparkContext {
@transient var dataset: DataFrame = _
@transient var rdd: RDD[LabeledPoint] = _
override def beforeAll(): Unit = {
super.beforeAll()
val nPoints = 1000
// The following coefficients and xMean/xVariance are computed from iris dataset with lambda=0.2
// As a result, we are drawing samples from probability distribution of an actual model.
val coefficients = Array(
-0.57997, 0.912083, -0.371077, -0.819866, 2.688191,
-0.16624, -0.84355, -0.048509, -0.301789, 4.170682)
val xMean = Array(5.843, 3.057, 3.758, 1.199)
val xVariance = Array(0.6856, 0.1899, 3.116, 0.581)
rdd = sc.parallelize(generateMultinomialLogisticInput(
coefficients, xMean, xVariance, true, nPoints, 42), 2)
dataset = sqlContext.createDataFrame(rdd)
}
test("params") {
ParamsSuite.checkParams(new OneVsRest)
val lrModel = new LogisticRegressionModel("lr", Vectors.dense(0.0), 0.0)
val model = new OneVsRestModel("ovr", Metadata.empty, Array(lrModel))
ParamsSuite.checkParams(model)
}
test("one-vs-rest: default params") {
val numClasses = 3
val ova = new OneVsRest()
.setClassifier(new LogisticRegression)
assert(ova.getLabelCol === "label")
assert(ova.getPredictionCol === "prediction")
val ovaModel = ova.fit(dataset)
// copied model must have the same parent.
MLTestingUtils.checkCopy(ovaModel)
assert(ovaModel.models.size === numClasses)
val transformedDataset = ovaModel.transform(dataset)
// check for label metadata in prediction col
val predictionColSchema = transformedDataset.schema(ovaModel.getPredictionCol)
assert(MetadataUtils.getNumClasses(predictionColSchema) === Some(3))
val ovaResults = transformedDataset.select("prediction", "label").rdd.map {
row => (row.getDouble(0), row.getDouble(1))
}
val lr = new LogisticRegressionWithLBFGS().setIntercept(true).setNumClasses(numClasses)
lr.optimizer.setRegParam(0.1).setNumIterations(100)
val model = lr.run(rdd)
val results = model.predict(rdd.map(_.features)).zip(rdd.map(_.label))
// determine the #confusion matrix in each class.
// bound how much error we allow compared to multinomial logistic regression.
val expectedMetrics = new MulticlassMetrics(results)
val ovaMetrics = new MulticlassMetrics(ovaResults)
assert(expectedMetrics.confusionMatrix ~== ovaMetrics.confusionMatrix absTol 400)
}
test("one-vs-rest: pass label metadata correctly during train") {
val numClasses = 3
val ova = new OneVsRest()
ova.setClassifier(new MockLogisticRegression)
val labelMetadata = NominalAttribute.defaultAttr.withName("label").withNumValues(numClasses)
val labelWithMetadata = dataset("label").as("label", labelMetadata.toMetadata())
val features = dataset("features").as("features")
val datasetWithLabelMetadata = dataset.select(labelWithMetadata, features)
ova.fit(datasetWithLabelMetadata)
}
test("SPARK-8092: ensure label features and prediction cols are configurable") {
val labelIndexer = new StringIndexer()
.setInputCol("label")
.setOutputCol("indexed")
val indexedDataset = labelIndexer
.fit(dataset)
.transform(dataset)
.drop("label")
.withColumnRenamed("features", "f")
val ova = new OneVsRest()
ova.setClassifier(new LogisticRegression())
.setLabelCol(labelIndexer.getOutputCol)
.setFeaturesCol("f")
.setPredictionCol("p")
val ovaModel = ova.fit(indexedDataset)
val transformedDataset = ovaModel.transform(indexedDataset)
val outputFields = transformedDataset.schema.fieldNames.toSet
assert(outputFields.contains("p"))
}
test("SPARK-8049: OneVsRest shouldn't output temp columns") {
val logReg = new LogisticRegression()
.setMaxIter(1)
val ovr = new OneVsRest()
.setClassifier(logReg)
val output = ovr.fit(dataset).transform(dataset)
assert(output.schema.fieldNames.toSet === Set("label", "features", "prediction"))
}
test("OneVsRest.copy and OneVsRestModel.copy") {
val lr = new LogisticRegression()
.setMaxIter(1)
val ovr = new OneVsRest()
withClue("copy with classifier unset should work") {
ovr.copy(ParamMap(lr.maxIter -> 10))
}
ovr.setClassifier(lr)
val ovr1 = ovr.copy(ParamMap(lr.maxIter -> 10))
require(ovr.getClassifier.getOrDefault(lr.maxIter) === 1, "copy should have no side-effects")
require(ovr1.getClassifier.getOrDefault(lr.maxIter) === 10,
"copy should handle extra classifier params")
val ovrModel = ovr1.fit(dataset).copy(ParamMap(lr.thresholds -> Array(0.9, 0.1)))
ovrModel.models.foreach { case m: LogisticRegressionModel =>
require(m.getThreshold === 0.1, "copy should handle extra model params")
}
}
}
private class MockLogisticRegression(uid: String) extends LogisticRegression(uid) {
def this() = this("mockLogReg")
setMaxIter(1)
override protected[spark] def train(dataset: DataFrame): LogisticRegressionModel = {
val labelSchema = dataset.schema($(labelCol))
// check for label attribute propagation.
assert(MetadataUtils.getNumClasses(labelSchema).forall(_ == 2))
super.train(dataset)
}
}
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