From eb1b4e06bbee479ff0937cc9920dd26a9f725f37 Mon Sep 17 00:00:00 2001 From: Cathy Yeh Date: Mon, 13 Nov 2017 13:23:18 -0800 Subject: beliefs package --- beliefs/__init__.py | 0 beliefs/models/DirectedGraph.py | 35 +++++++++++++++++++++++++++++++++++ beliefs/models/__init__.py | 0 3 files changed, 35 insertions(+) create mode 100644 beliefs/__init__.py create mode 100644 beliefs/models/DirectedGraph.py create mode 100644 beliefs/models/__init__.py diff --git a/beliefs/__init__.py b/beliefs/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/beliefs/models/DirectedGraph.py b/beliefs/models/DirectedGraph.py new file mode 100644 index 0000000..8dfb9bd --- /dev/null +++ b/beliefs/models/DirectedGraph.py @@ -0,0 +1,35 @@ +import networkx as nx + + +class DirectedGraph(nx.DiGraph): + """ + Base class for all directed graphical models. + """ + def __init__(self, edges, node_labels): + """ + Input: + edges: an edge list, e.g. [(parent1, child1), (parent1, child2)] + node_labels: a list of strings of node labels + """ + super().__init__() + if edges is not None: + self.add_edges_from(edges) + if node_labels is not None: + self.add_nodes_from(node_labels) + + def get_leaves(self): + """ + Returns a list of leaves of the graph. + """ + return [node for node, out_degree in self.out_degree_iter() if + out_degree == 0] + + def get_roots(self): + """ + Returns a list of roots of the graph. + """ + return [node for node, in_degree in self.in_degree().items() if + in_degree == 0] + + def get_topologically_sorted_nodes(self, reverse=False): + return nx.topological_sort(self, reverse=reverse) diff --git a/beliefs/models/__init__.py b/beliefs/models/__init__.py new file mode 100644 index 0000000..e69de29 -- cgit v1.2.3