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author | Sean Owen <sowen@cloudera.com> | 2014-01-06 15:13:16 +0000 |
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committer | Sean Owen <sowen@cloudera.com> | 2014-01-06 15:13:16 +0000 |
commit | 7379b2915f5b75476932e2098b83050f7726829e (patch) | |
tree | 8420dc026dfebb859102461fc02add131209ed0a /core/src | |
parent | 66d501276b5a066bd9abaa4e284cfad557665948 (diff) | |
parent | a2e7e0497484554f86bd71e93705eb0422b1512b (diff) | |
download | spark-7379b2915f5b75476932e2098b83050f7726829e.tar.gz spark-7379b2915f5b75476932e2098b83050f7726829e.tar.bz2 spark-7379b2915f5b75476932e2098b83050f7726829e.zip |
Merge remote-tracking branch 'upstream/master'
Diffstat (limited to 'core/src')
21 files changed, 520 insertions, 248 deletions
diff --git a/core/src/main/scala/org/apache/spark/SparkContext.scala b/core/src/main/scala/org/apache/spark/SparkContext.scala index 84bd0f7ffd..e80e43af6d 100644 --- a/core/src/main/scala/org/apache/spark/SparkContext.scala +++ b/core/src/main/scala/org/apache/spark/SparkContext.scala @@ -169,10 +169,16 @@ class SparkContext( // Environment variables to pass to our executors private[spark] val executorEnvs = HashMap[String, String]() // Note: SPARK_MEM is included for Mesos, but overwritten for standalone mode in ExecutorRunner - for (key <- Seq("SPARK_CLASSPATH", "SPARK_LIBRARY_PATH", "SPARK_JAVA_OPTS", "SPARK_TESTING"); + for (key <- Seq("SPARK_CLASSPATH", "SPARK_LIBRARY_PATH", "SPARK_JAVA_OPTS"); value <- Option(System.getenv(key))) { executorEnvs(key) = value } + // Convert java options to env vars as a work around + // since we can't set env vars directly in sbt. + for { (envKey, propKey) <- Seq(("SPARK_HOME", "spark.home"), ("SPARK_TESTING", "spark.testing")) + value <- Option(System.getenv(envKey)).orElse(Option(System.getProperty(propKey)))} { + executorEnvs(envKey) = value + } // Since memory can be set with a system property too, use that executorEnvs("SPARK_MEM") = executorMemory + "m" executorEnvs ++= conf.getExecutorEnv @@ -729,6 +735,26 @@ class SparkContext( } /** + * Support function for API backtraces. + */ + def setCallSite(site: String) { + setLocalProperty("externalCallSite", site) + } + + /** + * Support function for API backtraces. + */ + def clearCallSite() { + setLocalProperty("externalCallSite", null) + } + + private[spark] def getCallSite(): String = { + val callSite = getLocalProperty("externalCallSite") + if (callSite == null) return Utils.formatSparkCallSite + callSite + } + + /** * Run a function on a given set of partitions in an RDD and pass the results to the given * handler function. This is the main entry point for all actions in Spark. The allowLocal * flag specifies whether the scheduler can run the computation on the driver rather than @@ -740,7 +766,7 @@ class SparkContext( partitions: Seq[Int], allowLocal: Boolean, resultHandler: (Int, U) => Unit) { - val callSite = Utils.formatSparkCallSite + val callSite = getCallSite val cleanedFunc = clean(func) logInfo("Starting job: " + callSite) val start = System.nanoTime @@ -824,7 +850,7 @@ class SparkContext( func: (TaskContext, Iterator[T]) => U, evaluator: ApproximateEvaluator[U, R], timeout: Long): PartialResult[R] = { - val callSite = Utils.formatSparkCallSite + val callSite = getCallSite logInfo("Starting job: " + callSite) val start = System.nanoTime val result = dagScheduler.runApproximateJob(rdd, func, evaluator, callSite, timeout, @@ -844,7 +870,7 @@ class SparkContext( resultFunc: => R): SimpleFutureAction[R] = { val cleanF = clean(processPartition) - val callSite = Utils.formatSparkCallSite + val callSite = getCallSite val waiter = dagScheduler.submitJob( rdd, (context: TaskContext, iter: Iterator[T]) => cleanF(iter), diff --git a/core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala b/core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala index 0680a065a3..e93b10fd7e 100644 --- a/core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala +++ b/core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala @@ -411,10 +411,30 @@ class JavaSparkContext(val sc: SparkContext) extends JavaSparkContextVarargsWork * changed at runtime. */ def getConf: SparkConf = sc.getConf + + /** + * Pass-through to SparkContext.setCallSite. For API support only. + */ + def setCallSite(site: String) { + sc.setCallSite(site) + } + + /** + * Pass-through to SparkContext.setCallSite. For API support only. + */ + def clearCallSite() { + sc.clearCallSite() + } } object JavaSparkContext { implicit def fromSparkContext(sc: SparkContext): JavaSparkContext = new JavaSparkContext(sc) implicit def toSparkContext(jsc: JavaSparkContext): SparkContext = jsc.sc + + /** + * Find the JAR from which a given class was loaded, to make it easy for users to pass + * their JARs to SparkContext. + */ + def jarOfClass(cls: Class[_]) = SparkContext.jarOfClass(cls).toArray } diff --git a/core/src/main/scala/org/apache/spark/deploy/client/Client.scala b/core/src/main/scala/org/apache/spark/deploy/client/Client.scala index 9bbd635ab9..481026eaa2 100644 --- a/core/src/main/scala/org/apache/spark/deploy/client/Client.scala +++ b/core/src/main/scala/org/apache/spark/deploy/client/Client.scala @@ -24,7 +24,8 @@ import scala.concurrent.duration._ import akka.actor._ import akka.pattern.ask -import akka.remote.{DisassociatedEvent, RemotingLifecycleEvent} +import akka.remote.{AssociationErrorEvent, DisassociatedEvent, RemotingLifecycleEvent} + import org.apache.spark.{Logging, SparkConf, SparkException} import org.apache.spark.deploy.{ApplicationDescription, ExecutorState} import org.apache.spark.deploy.DeployMessages._ @@ -110,6 +111,12 @@ private[spark] class Client( } } + private def isPossibleMaster(remoteUrl: Address) = { + masterUrls.map(s => Master.toAkkaUrl(s)) + .map(u => AddressFromURIString(u).hostPort) + .contains(remoteUrl.hostPort) + } + override def receive = { case RegisteredApplication(appId_, masterUrl) => appId = appId_ @@ -145,6 +152,9 @@ private[spark] class Client( logWarning(s"Connection to $address failed; waiting for master to reconnect...") markDisconnected() + case AssociationErrorEvent(cause, _, address, _) if isPossibleMaster(address) => + logWarning(s"Could not connect to $address: $cause") + case StopClient => markDead() sender ! true diff --git a/core/src/main/scala/org/apache/spark/executor/Executor.scala b/core/src/main/scala/org/apache/spark/executor/Executor.scala index 3c92c205ea..e51d274d33 100644 --- a/core/src/main/scala/org/apache/spark/executor/Executor.scala +++ b/core/src/main/scala/org/apache/spark/executor/Executor.scala @@ -141,11 +141,6 @@ private[spark] class Executor( val tr = runningTasks.get(taskId) if (tr != null) { tr.kill() - // We remove the task also in the finally block in TaskRunner.run. - // The reason we need to remove it here is because killTask might be called before the task - // is even launched, and never reaching that finally block. ConcurrentHashMap's remove is - // idempotent. - runningTasks.remove(taskId) } } @@ -167,6 +162,8 @@ private[spark] class Executor( class TaskRunner(execBackend: ExecutorBackend, taskId: Long, serializedTask: ByteBuffer) extends Runnable { + object TaskKilledException extends Exception + @volatile private var killed = false @volatile private var task: Task[Any] = _ @@ -200,9 +197,11 @@ private[spark] class Executor( // If this task has been killed before we deserialized it, let's quit now. Otherwise, // continue executing the task. if (killed) { - logInfo("Executor killed task " + taskId) - execBackend.statusUpdate(taskId, TaskState.KILLED, ser.serialize(TaskKilled)) - return + // Throw an exception rather than returning, because returning within a try{} block + // causes a NonLocalReturnControl exception to be thrown. The NonLocalReturnControl + // exception will be caught by the catch block, leading to an incorrect ExceptionFailure + // for the task. + throw TaskKilledException } attemptedTask = Some(task) @@ -216,9 +215,7 @@ private[spark] class Executor( // If the task has been killed, let's fail it. if (task.killed) { - logInfo("Executor killed task " + taskId) - execBackend.statusUpdate(taskId, TaskState.KILLED, ser.serialize(TaskKilled)) - return + throw TaskKilledException } val resultSer = SparkEnv.get.serializer.newInstance() @@ -260,6 +257,11 @@ private[spark] class Executor( execBackend.statusUpdate(taskId, TaskState.FAILED, ser.serialize(reason)) } + case TaskKilledException => { + logInfo("Executor killed task " + taskId) + execBackend.statusUpdate(taskId, TaskState.KILLED, ser.serialize(TaskKilled)) + } + case t: Throwable => { val serviceTime = (System.currentTimeMillis() - taskStart).toInt val metrics = attemptedTask.flatMap(t => t.metrics) diff --git a/core/src/main/scala/org/apache/spark/rdd/PartitionerAwareUnionRDD.scala b/core/src/main/scala/org/apache/spark/rdd/PartitionerAwareUnionRDD.scala new file mode 100644 index 0000000000..4c625d062e --- /dev/null +++ b/core/src/main/scala/org/apache/spark/rdd/PartitionerAwareUnionRDD.scala @@ -0,0 +1,110 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +package org.apache.spark.rdd + +import scala.reflect.ClassTag +import java.io.{ObjectOutputStream, IOException} +import org.apache.spark.{TaskContext, OneToOneDependency, SparkContext, Partition} + + +/** + * Class representing partitions of PartitionerAwareUnionRDD, which maintains the list of corresponding partitions + * of parent RDDs. + */ +private[spark] +class PartitionerAwareUnionRDDPartition( + @transient val rdds: Seq[RDD[_]], + val idx: Int + ) extends Partition { + var parents = rdds.map(_.partitions(idx)).toArray + + override val index = idx + override def hashCode(): Int = idx + + @throws(classOf[IOException]) + private def writeObject(oos: ObjectOutputStream) { + // Update the reference to parent partition at the time of task serialization + parents = rdds.map(_.partitions(index)).toArray + oos.defaultWriteObject() + } +} + +/** + * Class representing an RDD that can take multiple RDDs partitioned by the same partitioner and + * unify them into a single RDD while preserving the partitioner. So m RDDs with p partitions each + * will be unified to a single RDD with p partitions and the same partitioner. The preferred + * location for each partition of the unified RDD will be the most common preferred location + * of the corresponding partitions of the parent RDDs. For example, location of partition 0 + * of the unified RDD will be where most of partition 0 of the parent RDDs are located. + */ +private[spark] +class PartitionerAwareUnionRDD[T: ClassTag]( + sc: SparkContext, + var rdds: Seq[RDD[T]] + ) extends RDD[T](sc, rdds.map(x => new OneToOneDependency(x))) { + require(rdds.length > 0) + require(rdds.flatMap(_.partitioner).toSet.size == 1, + "Parent RDDs have different partitioners: " + rdds.flatMap(_.partitioner)) + + override val partitioner = rdds.head.partitioner + + override def getPartitions: Array[Partition] = { + val numPartitions = partitioner.get.numPartitions + (0 until numPartitions).map(index => { + new PartitionerAwareUnionRDDPartition(rdds, index) + }).toArray + } + + // Get the location where most of the partitions of parent RDDs are located + override def getPreferredLocations(s: Partition): Seq[String] = { + logDebug("Finding preferred location for " + this + ", partition " + s.index) + val parentPartitions = s.asInstanceOf[PartitionerAwareUnionRDDPartition].parents + val locations = rdds.zip(parentPartitions).flatMap { + case (rdd, part) => { + val parentLocations = currPrefLocs(rdd, part) + logDebug("Location of " + rdd + " partition " + part.index + " = " + parentLocations) + parentLocations + } + } + val location = if (locations.isEmpty) { + None + } else { + // Find the location that maximum number of parent partitions prefer + Some(locations.groupBy(x => x).maxBy(_._2.length)._1) + } + logDebug("Selected location for " + this + ", partition " + s.index + " = " + location) + location.toSeq + } + + override def compute(s: Partition, context: TaskContext): Iterator[T] = { + val parentPartitions = s.asInstanceOf[PartitionerAwareUnionRDDPartition].parents + rdds.zip(parentPartitions).iterator.flatMap { + case (rdd, p) => rdd.iterator(p, context) + } + } + + override def clearDependencies() { + super.clearDependencies() + rdds = null + } + + // Get the *current* preferred locations from the DAGScheduler (as opposed to the static ones) + private def currPrefLocs(rdd: RDD[_], part: Partition): Seq[String] = { + rdd.context.getPreferredLocs(rdd, part.index).map(tl => tl.host) + } +} diff --git a/core/src/main/scala/org/apache/spark/rdd/RDD.scala b/core/src/main/scala/org/apache/spark/rdd/RDD.scala index 6a7b0f8a86..3f41b66279 100644 --- a/core/src/main/scala/org/apache/spark/rdd/RDD.scala +++ b/core/src/main/scala/org/apache/spark/rdd/RDD.scala @@ -953,7 +953,7 @@ abstract class RDD[T: ClassTag]( private var storageLevel: StorageLevel = StorageLevel.NONE /** Record user function generating this RDD. */ - @transient private[spark] val origin = Utils.formatSparkCallSite + @transient private[spark] val origin = sc.getCallSite private[spark] def elementClassTag: ClassTag[T] = classTag[T] diff --git a/core/src/main/scala/org/apache/spark/rdd/RDDCheckpointData.scala b/core/src/main/scala/org/apache/spark/rdd/RDDCheckpointData.scala index 642dabaad5..bc688110f4 100644 --- a/core/src/main/scala/org/apache/spark/rdd/RDDCheckpointData.scala +++ b/core/src/main/scala/org/apache/spark/rdd/RDDCheckpointData.scala @@ -40,7 +40,7 @@ private[spark] object CheckpointState extends Enumeration { * manages the post-checkpoint state by providing the updated partitions, iterator and preferred locations * of the checkpointed RDD. */ -private[spark] class RDDCheckpointData[T: ClassTag](rdd: RDD[T]) +private[spark] class RDDCheckpointData[T: ClassTag](@transient rdd: RDD[T]) extends Logging with Serializable { import CheckpointState._ diff --git a/core/src/main/scala/org/apache/spark/scheduler/TaskSchedulerImpl.scala b/core/src/main/scala/org/apache/spark/scheduler/TaskSchedulerImpl.scala index d94b706854..0c8ed62759 100644 --- a/core/src/main/scala/org/apache/spark/scheduler/TaskSchedulerImpl.scala +++ b/core/src/main/scala/org/apache/spark/scheduler/TaskSchedulerImpl.scala @@ -285,7 +285,8 @@ private[spark] class TaskSchedulerImpl( } } case None => - logInfo("Ignoring update from TID " + tid + " because its task set is gone") + logInfo("Ignoring update with state %s from TID %s because its task set is gone" + .format(state, tid)) } } catch { case e: Exception => logError("Exception in statusUpdate", e) @@ -328,7 +329,7 @@ private[spark] class TaskSchedulerImpl( // Have each task set throw a SparkException with the error for ((taskSetId, manager) <- activeTaskSets) { try { - manager.error(message) + manager.abort(message) } catch { case e: Exception => logError("Exception in error callback", e) } diff --git a/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala b/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala index 67ad99a4d7..6dd1469d8f 100644 --- a/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala +++ b/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala @@ -548,11 +548,6 @@ private[spark] class TaskSetManager( } } - def error(message: String) { - // Save the error message - abort("Error: " + message) - } - def abort(message: String) { // TODO: Kill running tasks if we were not terminated due to a Mesos error sched.dagScheduler.taskSetFailed(taskSet, message) diff --git a/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/CoarseMesosSchedulerBackend.scala b/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/CoarseMesosSchedulerBackend.scala index 08811520cf..d46fceba89 100644 --- a/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/CoarseMesosSchedulerBackend.scala +++ b/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/CoarseMesosSchedulerBackend.scala @@ -127,7 +127,7 @@ private[spark] class CoarseMesosSchedulerBackend( CoarseGrainedSchedulerBackend.ACTOR_NAME) val uri = conf.get("spark.executor.uri", null) if (uri == null) { - val runScript = new File(sparkHome, "spark-class").getCanonicalPath + val runScript = new File(sparkHome, "./bin/spark-class").getCanonicalPath command.setValue( "\"%s\" org.apache.spark.executor.CoarseGrainedExecutorBackend %s %s %s %d".format( runScript, driverUrl, offer.getSlaveId.getValue, offer.getHostname, numCores)) @@ -136,7 +136,7 @@ private[spark] class CoarseMesosSchedulerBackend( // glob the directory "correctly". val basename = uri.split('/').last.split('.').head command.setValue( - "cd %s*; ./spark-class org.apache.spark.executor.CoarseGrainedExecutorBackend %s %s %s %d" + "cd %s*; ./bin/spark-class org.apache.spark.executor.CoarseGrainedExecutorBackend %s %s %s %d" .format(basename, driverUrl, offer.getSlaveId.getValue, offer.getHostname, numCores)) command.addUris(CommandInfo.URI.newBuilder().setValue(uri)) } diff --git a/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/MesosSchedulerBackend.scala b/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/MesosSchedulerBackend.scala index bb278fb155..ae8d527352 100644 --- a/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/MesosSchedulerBackend.scala +++ b/core/src/main/scala/org/apache/spark/scheduler/cluster/mesos/MesosSchedulerBackend.scala @@ -102,12 +102,12 @@ private[spark] class MesosSchedulerBackend( .setEnvironment(environment) val uri = sc.conf.get("spark.executor.uri", null) if (uri == null) { - command.setValue(new File(sparkHome, "spark-executor").getCanonicalPath) + command.setValue(new File(sparkHome, "/sbin/spark-executor").getCanonicalPath) } else { // Grab everything to the first '.'. We'll use that and '*' to // glob the directory "correctly". val basename = uri.split('/').last.split('.').head - command.setValue("cd %s*; ./spark-executor".format(basename)) + command.setValue("cd %s*; ./sbin/spark-executor".format(basename)) command.addUris(CommandInfo.URI.newBuilder().setValue(uri)) } val memory = Resource.newBuilder() diff --git a/core/src/main/scala/org/apache/spark/serializer/Serializer.scala b/core/src/main/scala/org/apache/spark/serializer/Serializer.scala index 160cca4d6c..9a5e3cb77e 100644 --- a/core/src/main/scala/org/apache/spark/serializer/Serializer.scala +++ b/core/src/main/scala/org/apache/spark/serializer/Serializer.scala @@ -29,6 +29,9 @@ import org.apache.spark.util.{NextIterator, ByteBufferInputStream} * A serializer. Because some serialization libraries are not thread safe, this class is used to * create [[org.apache.spark.serializer.SerializerInstance]] objects that do the actual serialization and are * guaranteed to only be called from one thread at a time. + * + * Implementations of this trait should have a zero-arg constructor or a constructor that accepts a + * [[org.apache.spark.SparkConf]] as parameter. If both constructors are defined, the latter takes precedence. */ trait Serializer { def newInstance(): SerializerInstance diff --git a/core/src/main/scala/org/apache/spark/serializer/SerializerManager.scala b/core/src/main/scala/org/apache/spark/serializer/SerializerManager.scala index 22465272f3..36a37af4f8 100644 --- a/core/src/main/scala/org/apache/spark/serializer/SerializerManager.scala +++ b/core/src/main/scala/org/apache/spark/serializer/SerializerManager.scala @@ -27,6 +27,7 @@ import org.apache.spark.SparkConf * creating a new one. */ private[spark] class SerializerManager { + // TODO: Consider moving this into SparkConf itself to remove the global singleton. private val serializers = new ConcurrentHashMap[String, Serializer] private var _default: Serializer = _ @@ -53,8 +54,18 @@ private[spark] class SerializerManager { if (serializer == null) { val clsLoader = Thread.currentThread.getContextClassLoader val cls = Class.forName(clsName, true, clsLoader) - val constructor = cls.getConstructor(classOf[SparkConf]) - serializer = constructor.newInstance(conf).asInstanceOf[Serializer] + + // First try with the constructor that takes SparkConf. If we can't find one, + // use a no-arg constructor instead. + try { + val constructor = cls.getConstructor(classOf[SparkConf]) + serializer = constructor.newInstance(conf).asInstanceOf[Serializer] + } catch { + case _: NoSuchMethodException => + val constructor = cls.getConstructor() + serializer = constructor.newInstance().asInstanceOf[Serializer] + } + serializers.put(clsName, serializer) } serializer diff --git a/core/src/main/scala/org/apache/spark/ui/UIWorkloadGenerator.scala b/core/src/main/scala/org/apache/spark/ui/UIWorkloadGenerator.scala index 58d47a201d..6ba15187d9 100644 --- a/core/src/main/scala/org/apache/spark/ui/UIWorkloadGenerator.scala +++ b/core/src/main/scala/org/apache/spark/ui/UIWorkloadGenerator.scala @@ -27,7 +27,7 @@ import org.apache.spark.scheduler.SchedulingMode /** * Continuously generates jobs that expose various features of the WebUI (internal testing tool). * - * Usage: ./run spark.ui.UIWorkloadGenerator [master] + * Usage: ./bin/spark-class org.apache.spark.ui.UIWorkloadGenerator [master] [FIFO|FAIR] */ private[spark] object UIWorkloadGenerator { @@ -36,7 +36,7 @@ private[spark] object UIWorkloadGenerator { def main(args: Array[String]) { if (args.length < 2) { - println("usage: ./spark-class org.apache.spark.ui.UIWorkloadGenerator [master] [FIFO|FAIR]") + println("usage: ./bin/spark-class org.apache.spark.ui.UIWorkloadGenerator [master] [FIFO|FAIR]") System.exit(1) } diff --git a/core/src/main/scala/org/apache/spark/util/AkkaUtils.scala b/core/src/main/scala/org/apache/spark/util/AkkaUtils.scala index 362cea5e3e..7df7e3d8e5 100644 --- a/core/src/main/scala/org/apache/spark/util/AkkaUtils.scala +++ b/core/src/main/scala/org/apache/spark/util/AkkaUtils.scala @@ -21,6 +21,8 @@ import scala.concurrent.duration.{Duration, FiniteDuration} import akka.actor.{ActorSystem, ExtendedActorSystem, IndestructibleActorSystem} import com.typesafe.config.ConfigFactory +import org.apache.log4j.{Level, Logger} + import org.apache.spark.SparkConf /** @@ -47,8 +49,15 @@ private[spark] object AkkaUtils { val akkaTimeout = conf.get("spark.akka.timeout", "100").toInt val akkaFrameSize = conf.get("spark.akka.frameSize", "10").toInt - val lifecycleEvents = - if (conf.get("spark.akka.logLifecycleEvents", "false").toBoolean) "on" else "off" + val akkaLogLifecycleEvents = conf.get("spark.akka.logLifecycleEvents", "false").toBoolean + val lifecycleEvents = if (akkaLogLifecycleEvents) "on" else "off" + if (!akkaLogLifecycleEvents) { + // As a workaround for Akka issue #3787, we coerce the "EndpointWriter" log to be silent. + // See: https://www.assembla.com/spaces/akka/tickets/3787#/ + Option(Logger.getLogger("akka.remote.EndpointWriter")).map(l => l.setLevel(Level.FATAL)) + } + + val logAkkaConfig = if (conf.get("spark.akka.logAkkaConfig", "false").toBoolean) "on" else "off" val akkaHeartBeatPauses = conf.get("spark.akka.heartbeat.pauses", "600").toInt val akkaFailureDetector = @@ -73,7 +82,10 @@ private[spark] object AkkaUtils { |akka.remote.netty.tcp.maximum-frame-size = ${akkaFrameSize}MiB |akka.remote.netty.tcp.execution-pool-size = $akkaThreads |akka.actor.default-dispatcher.throughput = $akkaBatchSize + |akka.log-config-on-start = $logAkkaConfig |akka.remote.log-remote-lifecycle-events = $lifecycleEvents + |akka.log-dead-letters = $lifecycleEvents + |akka.log-dead-letters-during-shutdown = $lifecycleEvents """.stripMargin) val actorSystem = if (indestructible) { diff --git a/core/src/test/resources/uncommons-maths-1.2.2.jar b/core/src/test/resources/uncommons-maths-1.2.2.jar Binary files differdeleted file mode 100644 index e126001c1c..0000000000 --- a/core/src/test/resources/uncommons-maths-1.2.2.jar +++ /dev/null diff --git a/core/src/test/scala/org/apache/spark/CheckpointSuite.scala b/core/src/test/scala/org/apache/spark/CheckpointSuite.scala index 70bfb81661..ec13b329b2 100644 --- a/core/src/test/scala/org/apache/spark/CheckpointSuite.scala +++ b/core/src/test/scala/org/apache/spark/CheckpointSuite.scala @@ -55,15 +55,15 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { } test("RDDs with one-to-one dependencies") { - testCheckpointing(_.map(x => x.toString)) - testCheckpointing(_.flatMap(x => 1 to x)) - testCheckpointing(_.filter(_ % 2 == 0)) - testCheckpointing(_.sample(false, 0.5, 0)) - testCheckpointing(_.glom()) - testCheckpointing(_.mapPartitions(_.map(_.toString))) - testCheckpointing(_.map(x => (x % 2, 1)).reduceByKey(_ + _).mapValues(_.toString)) - testCheckpointing(_.map(x => (x % 2, 1)).reduceByKey(_ + _).flatMapValues(x => 1 to x)) - testCheckpointing(_.pipe(Seq("cat"))) + testRDD(_.map(x => x.toString)) + testRDD(_.flatMap(x => 1 to x)) + testRDD(_.filter(_ % 2 == 0)) + testRDD(_.sample(false, 0.5, 0)) + testRDD(_.glom()) + testRDD(_.mapPartitions(_.map(_.toString))) + testRDD(_.map(x => (x % 2, 1)).reduceByKey(_ + _).mapValues(_.toString)) + testRDD(_.map(x => (x % 2, 1)).reduceByKey(_ + _).flatMapValues(x => 1 to x)) + testRDD(_.pipe(Seq("cat"))) } test("ParallelCollection") { @@ -95,7 +95,7 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { } test("ShuffledRDD") { - testCheckpointing(rdd => { + testRDD(rdd => { // Creating ShuffledRDD directly as PairRDDFunctions.combineByKey produces a MapPartitionedRDD new ShuffledRDD[Int, Int, (Int, Int)](rdd.map(x => (x % 2, 1)), partitioner) }) @@ -103,25 +103,17 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { test("UnionRDD") { def otherRDD = sc.makeRDD(1 to 10, 1) - - // Test whether the size of UnionRDDPartitions reduce in size after parent RDD is checkpointed. - // Current implementation of UnionRDD has transient reference to parent RDDs, - // so only the partitions will reduce in serialized size, not the RDD. - testCheckpointing(_.union(otherRDD), false, true) - testParentCheckpointing(_.union(otherRDD), false, true) + testRDD(_.union(otherRDD)) + testRDDPartitions(_.union(otherRDD)) } test("CartesianRDD") { def otherRDD = sc.makeRDD(1 to 10, 1) - testCheckpointing(new CartesianRDD(sc, _, otherRDD)) - - // Test whether size of CoalescedRDD reduce in size after parent RDD is checkpointed - // Current implementation of CoalescedRDDPartition has transient reference to parent RDD, - // so only the RDD will reduce in serialized size, not the partitions. - testParentCheckpointing(new CartesianRDD(sc, _, otherRDD), true, false) + testRDD(new CartesianRDD(sc, _, otherRDD)) + testRDDPartitions(new CartesianRDD(sc, _, otherRDD)) // Test that the CartesianRDD updates parent partitions (CartesianRDD.s1/s2) after - // the parent RDD has been checkpointed and parent partitions have been changed to HadoopPartitions. + // the parent RDD has been checkpointed and parent partitions have been changed. // Note that this test is very specific to the current implementation of CartesianRDD. val ones = sc.makeRDD(1 to 100, 10).map(x => x) ones.checkpoint() // checkpoint that MappedRDD @@ -132,23 +124,20 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { val splitAfterCheckpoint = serializeDeserialize(cartesian.partitions.head.asInstanceOf[CartesianPartition]) assert( - (splitAfterCheckpoint.s1 != splitBeforeCheckpoint.s1) && - (splitAfterCheckpoint.s2 != splitBeforeCheckpoint.s2), - "CartesianRDD.parents not updated after parent RDD checkpointed" + (splitAfterCheckpoint.s1.getClass != splitBeforeCheckpoint.s1.getClass) && + (splitAfterCheckpoint.s2.getClass != splitBeforeCheckpoint.s2.getClass), + "CartesianRDD.s1 and CartesianRDD.s2 not updated after parent RDD is checkpointed" ) } test("CoalescedRDD") { - testCheckpointing(_.coalesce(2)) + testRDD(_.coalesce(2)) + testRDDPartitions(_.coalesce(2)) - // Test whether size of CoalescedRDD reduce in size after parent RDD is checkpointed - // Current implementation of CoalescedRDDPartition has transient reference to parent RDD, - // so only the RDD will reduce in serialized size, not the partitions. - testParentCheckpointing(_.coalesce(2), true, false) - - // Test that the CoalescedRDDPartition updates parent partitions (CoalescedRDDPartition.parents) after - // the parent RDD has been checkpointed and parent partitions have been changed to HadoopPartitions. - // Note that this test is very specific to the current implementation of CoalescedRDDPartitions + // Test that the CoalescedRDDPartition updates parent partitions (CoalescedRDDPartition.parents) + // after the parent RDD has been checkpointed and parent partitions have been changed. + // Note that this test is very specific to the current implementation of + // CoalescedRDDPartitions. val ones = sc.makeRDD(1 to 100, 10).map(x => x) ones.checkpoint() // checkpoint that MappedRDD val coalesced = new CoalescedRDD(ones, 2) @@ -158,33 +147,78 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { val splitAfterCheckpoint = serializeDeserialize(coalesced.partitions.head.asInstanceOf[CoalescedRDDPartition]) assert( - splitAfterCheckpoint.parents.head != splitBeforeCheckpoint.parents.head, - "CoalescedRDDPartition.parents not updated after parent RDD checkpointed" + splitAfterCheckpoint.parents.head.getClass != splitBeforeCheckpoint.parents.head.getClass, + "CoalescedRDDPartition.parents not updated after parent RDD is checkpointed" ) } test("CoGroupedRDD") { - val longLineageRDD1 = generateLongLineageRDDForCoGroupedRDD() - testCheckpointing(rdd => { + val longLineageRDD1 = generateFatPairRDD() + testRDD(rdd => { CheckpointSuite.cogroup(longLineageRDD1, rdd.map(x => (x % 2, 1)), partitioner) - }, false, true) + }) - val longLineageRDD2 = generateLongLineageRDDForCoGroupedRDD() - testParentCheckpointing(rdd => { + val longLineageRDD2 = generateFatPairRDD() + testRDDPartitions(rdd => { CheckpointSuite.cogroup( longLineageRDD2, sc.makeRDD(1 to 2, 2).map(x => (x % 2, 1)), partitioner) - }, false, true) + }) } test("ZippedRDD") { - testCheckpointing( - rdd => new ZippedRDD(sc, rdd, rdd.map(x => x)), true, false) - - // Test whether size of ZippedRDD reduce in size after parent RDD is checkpointed - // Current implementation of ZippedRDDPartitions has transient references to parent RDDs, - // so only the RDD will reduce in serialized size, not the partitions. - testParentCheckpointing( - rdd => new ZippedRDD(sc, rdd, rdd.map(x => x)), true, false) + testRDD(rdd => new ZippedRDD(sc, rdd, rdd.map(x => x))) + testRDDPartitions(rdd => new ZippedRDD(sc, rdd, rdd.map(x => x))) + + // Test that the ZippedPartition updates parent partitions + // after the parent RDD has been checkpointed and parent partitions have been changed. + // Note that this test is very specific to the current implementation of ZippedRDD. + val rdd = generateFatRDD() + val zippedRDD = new ZippedRDD(sc, rdd, rdd.map(x => x)) + zippedRDD.rdd1.checkpoint() + zippedRDD.rdd2.checkpoint() + val partitionBeforeCheckpoint = + serializeDeserialize(zippedRDD.partitions.head.asInstanceOf[ZippedPartition[_, _]]) + zippedRDD.count() + val partitionAfterCheckpoint = + serializeDeserialize(zippedRDD.partitions.head.asInstanceOf[ZippedPartition[_, _]]) + assert( + partitionAfterCheckpoint.partition1.getClass != partitionBeforeCheckpoint.partition1.getClass && + partitionAfterCheckpoint.partition2.getClass != partitionBeforeCheckpoint.partition2.getClass, + "ZippedRDD.partition1 and ZippedRDD.partition2 not updated after parent RDD is checkpointed" + ) + } + + test("PartitionerAwareUnionRDD") { + testRDD(rdd => { + new PartitionerAwareUnionRDD[(Int, Int)](sc, Array( + generateFatPairRDD(), + rdd.map(x => (x % 2, 1)).reduceByKey(partitioner, _ + _) + )) + }) + + testRDDPartitions(rdd => { + new PartitionerAwareUnionRDD[(Int, Int)](sc, Array( + generateFatPairRDD(), + rdd.map(x => (x % 2, 1)).reduceByKey(partitioner, _ + _) + )) + }) + + // Test that the PartitionerAwareUnionRDD updates parent partitions + // (PartitionerAwareUnionRDD.parents) after the parent RDD has been checkpointed and parent + // partitions have been changed. Note that this test is very specific to the current + // implementation of PartitionerAwareUnionRDD. + val pairRDD = generateFatPairRDD() + pairRDD.checkpoint() + val unionRDD = new PartitionerAwareUnionRDD(sc, Array(pairRDD)) + val partitionBeforeCheckpoint = serializeDeserialize( + unionRDD.partitions.head.asInstanceOf[PartitionerAwareUnionRDDPartition]) + pairRDD.count() + val partitionAfterCheckpoint = serializeDeserialize( + unionRDD.partitions.head.asInstanceOf[PartitionerAwareUnionRDDPartition]) + assert( + partitionBeforeCheckpoint.parents.head.getClass != partitionAfterCheckpoint.parents.head.getClass, + "PartitionerAwareUnionRDDPartition.parents not updated after parent RDD is checkpointed" + ) } test("CheckpointRDD with zero partitions") { @@ -198,29 +232,32 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { } /** - * Test checkpointing of the final RDD generated by the given operation. By default, - * this method tests whether the size of serialized RDD has reduced after checkpointing or not. - * It can also test whether the size of serialized RDD partitions has reduced after checkpointing or - * not, but this is not done by default as usually the partitions do not refer to any RDD and - * therefore never store the lineage. + * Test checkpointing of the RDD generated by the given operation. It tests whether the + * serialized size of the RDD is reduce after checkpointing or not. This function should be called + * on all RDDs that have a parent RDD (i.e., do not call on ParallelCollection, BlockRDD, etc.). */ - def testCheckpointing[U: ClassTag]( - op: (RDD[Int]) => RDD[U], - testRDDSize: Boolean = true, - testRDDPartitionSize: Boolean = false - ) { + def testRDD[U: ClassTag](op: (RDD[Int]) => RDD[U]) { // Generate the final RDD using given RDD operation - val baseRDD = generateLongLineageRDD() + val baseRDD = generateFatRDD() val operatedRDD = op(baseRDD) val parentRDD = operatedRDD.dependencies.headOption.orNull val rddType = operatedRDD.getClass.getSimpleName val numPartitions = operatedRDD.partitions.length + // Force initialization of all the data structures in RDDs + // Without this, serializing the RDD will give a wrong estimate of the size of the RDD + initializeRdd(operatedRDD) + + val partitionsBeforeCheckpoint = operatedRDD.partitions + // Find serialized sizes before and after the checkpoint - val (rddSizeBeforeCheckpoint, splitSizeBeforeCheckpoint) = getSerializedSizes(operatedRDD) + logInfo("RDD after checkpoint: " + operatedRDD + "\n" + operatedRDD.toDebugString) + val (rddSizeBeforeCheckpoint, partitionSizeBeforeCheckpoint) = getSerializedSizes(operatedRDD) operatedRDD.checkpoint() val result = operatedRDD.collect() - val (rddSizeAfterCheckpoint, splitSizeAfterCheckpoint) = getSerializedSizes(operatedRDD) + operatedRDD.collect() // force re-initialization of post-checkpoint lazy variables + val (rddSizeAfterCheckpoint, partitionSizeAfterCheckpoint) = getSerializedSizes(operatedRDD) + logInfo("RDD after checkpoint: " + operatedRDD + "\n" + operatedRDD.toDebugString) // Test whether the checkpoint file has been created assert(sc.checkpointFile[U](operatedRDD.getCheckpointFile.get).collect() === result) @@ -228,6 +265,9 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { // Test whether dependencies have been changed from its earlier parent RDD assert(operatedRDD.dependencies.head.rdd != parentRDD) + // Test whether the partitions have been changed from its earlier partitions + assert(operatedRDD.partitions.toList != partitionsBeforeCheckpoint.toList) + // Test whether the partitions have been changed to the new Hadoop partitions assert(operatedRDD.partitions.toList === operatedRDD.checkpointData.get.getPartitions.toList) @@ -237,122 +277,72 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { // Test whether the data in the checkpointed RDD is same as original assert(operatedRDD.collect() === result) - // Test whether serialized size of the RDD has reduced. If the RDD - // does not have any dependency to another RDD (e.g., ParallelCollection, - // ShuffleRDD with ShuffleDependency), it may not reduce in size after checkpointing. - if (testRDDSize) { - logInfo("Size of " + rddType + - "[" + rddSizeBeforeCheckpoint + " --> " + rddSizeAfterCheckpoint + "]") - assert( - rddSizeAfterCheckpoint < rddSizeBeforeCheckpoint, - "Size of " + rddType + " did not reduce after checkpointing " + - "[" + rddSizeBeforeCheckpoint + " --> " + rddSizeAfterCheckpoint + "]" - ) - } + // Test whether serialized size of the RDD has reduced. + logInfo("Size of " + rddType + + " [" + rddSizeBeforeCheckpoint + " --> " + rddSizeAfterCheckpoint + "]") + assert( + rddSizeAfterCheckpoint < rddSizeBeforeCheckpoint, + "Size of " + rddType + " did not reduce after checkpointing " + + " [" + rddSizeBeforeCheckpoint + " --> " + rddSizeAfterCheckpoint + "]" + ) - // Test whether serialized size of the partitions has reduced. If the partitions - // do not have any non-transient reference to another RDD or another RDD's partitions, it - // does not refer to a lineage and therefore may not reduce in size after checkpointing. - // However, if the original partitions before checkpointing do refer to a parent RDD, the partitions - // must be forgotten after checkpointing (to remove all reference to parent RDDs) and - // replaced with the HadooPartitions of the checkpointed RDD. - if (testRDDPartitionSize) { - logInfo("Size of " + rddType + " partitions " - + "[" + splitSizeBeforeCheckpoint + " --> " + splitSizeAfterCheckpoint + "]") - assert( - splitSizeAfterCheckpoint < splitSizeBeforeCheckpoint, - "Size of " + rddType + " partitions did not reduce after checkpointing " + - "[" + splitSizeBeforeCheckpoint + " --> " + splitSizeAfterCheckpoint + "]" - ) - } } /** * Test whether checkpointing of the parent of the generated RDD also * truncates the lineage or not. Some RDDs like CoGroupedRDD hold on to its parent * RDDs partitions. So even if the parent RDD is checkpointed and its partitions changed, - * this RDD will remember the partitions and therefore potentially the whole lineage. + * the generated RDD will remember the partitions and therefore potentially the whole lineage. + * This function should be called only those RDD whose partitions refer to parent RDD's + * partitions (i.e., do not call it on simple RDD like MappedRDD). + * */ - def testParentCheckpointing[U: ClassTag]( - op: (RDD[Int]) => RDD[U], - testRDDSize: Boolean, - testRDDPartitionSize: Boolean - ) { + def testRDDPartitions[U: ClassTag](op: (RDD[Int]) => RDD[U]) { // Generate the final RDD using given RDD operation - val baseRDD = generateLongLineageRDD() + val baseRDD = generateFatRDD() val operatedRDD = op(baseRDD) - val parentRDD = operatedRDD.dependencies.head.rdd + val parentRDDs = operatedRDD.dependencies.map(_.rdd) val rddType = operatedRDD.getClass.getSimpleName - val parentRDDType = parentRDD.getClass.getSimpleName - // Get the partitions and dependencies of the parent in case they're lazily computed - parentRDD.dependencies - parentRDD.partitions + // Force initialization of all the data structures in RDDs + // Without this, serializing the RDD will give a wrong estimate of the size of the RDD + initializeRdd(operatedRDD) // Find serialized sizes before and after the checkpoint - val (rddSizeBeforeCheckpoint, splitSizeBeforeCheckpoint) = getSerializedSizes(operatedRDD) - parentRDD.checkpoint() // checkpoint the parent RDD, not the generated one - val result = operatedRDD.collect() - val (rddSizeAfterCheckpoint, splitSizeAfterCheckpoint) = getSerializedSizes(operatedRDD) + logInfo("RDD after checkpoint: " + operatedRDD + "\n" + operatedRDD.toDebugString) + val (rddSizeBeforeCheckpoint, partitionSizeBeforeCheckpoint) = getSerializedSizes(operatedRDD) + parentRDDs.foreach(_.checkpoint()) // checkpoint the parent RDD, not the generated one + val result = operatedRDD.collect() // force checkpointing + operatedRDD.collect() // force re-initialization of post-checkpoint lazy variables + val (rddSizeAfterCheckpoint, partitionSizeAfterCheckpoint) = getSerializedSizes(operatedRDD) + logInfo("RDD after checkpoint: " + operatedRDD + "\n" + operatedRDD.toDebugString) // Test whether the data in the checkpointed RDD is same as original assert(operatedRDD.collect() === result) - // Test whether serialized size of the RDD has reduced because of its parent being - // checkpointed. If this RDD or its parent RDD do not have any dependency - // to another RDD (e.g., ParallelCollection, ShuffleRDD with ShuffleDependency), it may - // not reduce in size after checkpointing. - if (testRDDSize) { - assert( - rddSizeAfterCheckpoint < rddSizeBeforeCheckpoint, - "Size of " + rddType + " did not reduce after checkpointing parent " + parentRDDType + - "[" + rddSizeBeforeCheckpoint + " --> " + rddSizeAfterCheckpoint + "]" - ) - } - - // Test whether serialized size of the partitions has reduced because of its parent being - // checkpointed. If the partitions do not have any non-transient reference to another RDD - // or another RDD's partitions, it does not refer to a lineage and therefore may not reduce - // in size after checkpointing. However, if the partitions do refer to the *partitions* of a parent - // RDD, then these partitions must update reference to the parent RDD partitions as the parent RDD's - // partitions must have changed after checkpointing. - if (testRDDPartitionSize) { - assert( - splitSizeAfterCheckpoint < splitSizeBeforeCheckpoint, - "Size of " + rddType + " partitions did not reduce after checkpointing parent " + parentRDDType + - "[" + splitSizeBeforeCheckpoint + " --> " + splitSizeAfterCheckpoint + "]" - ) - } - + // Test whether serialized size of the partitions has reduced + logInfo("Size of partitions of " + rddType + + " [" + partitionSizeBeforeCheckpoint + " --> " + partitionSizeAfterCheckpoint + "]") + assert( + partitionSizeAfterCheckpoint < partitionSizeBeforeCheckpoint, + "Size of " + rddType + " partitions did not reduce after checkpointing parent RDDs" + + " [" + partitionSizeBeforeCheckpoint + " --> " + partitionSizeAfterCheckpoint + "]" + ) } /** - * Generate an RDD with a long lineage of one-to-one dependencies. + * Generate an RDD such that both the RDD and its partitions have large size. */ - def generateLongLineageRDD(): RDD[Int] = { - var rdd = sc.makeRDD(1 to 100, 4) - for (i <- 1 to 50) { - rdd = rdd.map(x => x + 1) - } - rdd + def generateFatRDD(): RDD[Int] = { + new FatRDD(sc.makeRDD(1 to 100, 4)).map(x => x) } /** - * Generate an RDD with a long lineage specifically for CoGroupedRDD. - * A CoGroupedRDD can have a long lineage only one of its parents have a long lineage - * and narrow dependency with this RDD. This method generate such an RDD by a sequence - * of cogroups and mapValues which creates a long lineage of narrow dependencies. + * Generate an pair RDD (with partitioner) such that both the RDD and its partitions + * have large size. */ - def generateLongLineageRDDForCoGroupedRDD() = { - val add = (x: (Seq[Int], Seq[Int])) => (x._1 ++ x._2).reduce(_ + _) - - def ones: RDD[(Int, Int)] = sc.makeRDD(1 to 2, 2).map(x => (x % 2, 1)).reduceByKey(partitioner, _ + _) - - var cogrouped: RDD[(Int, (Seq[Int], Seq[Int]))] = ones.cogroup(ones) - for(i <- 1 to 10) { - cogrouped = cogrouped.mapValues(add).cogroup(ones) - } - cogrouped.mapValues(add) + def generateFatPairRDD() = { + new FatPairRDD(sc.makeRDD(1 to 100, 4), partitioner).mapValues(x => x) } /** @@ -360,8 +350,26 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { * upon checkpointing. Ignores the checkpointData field, which may grow when we checkpoint. */ def getSerializedSizes(rdd: RDD[_]): (Int, Int) = { - (Utils.serialize(rdd).length - Utils.serialize(rdd.checkpointData).length, - Utils.serialize(rdd.partitions).length) + val rddSize = Utils.serialize(rdd).size + val rddCpDataSize = Utils.serialize(rdd.checkpointData).size + val rddPartitionSize = Utils.serialize(rdd.partitions).size + val rddDependenciesSize = Utils.serialize(rdd.dependencies).size + + // Print detailed size, helps in debugging + logInfo("Serialized sizes of " + rdd + + ": RDD = " + rddSize + + ", RDD checkpoint data = " + rddCpDataSize + + ", RDD partitions = " + rddPartitionSize + + ", RDD dependencies = " + rddDependenciesSize + ) + // this makes sure that serializing the RDD's checkpoint data does not + // serialize the whole RDD as well + assert( + rddSize > rddCpDataSize, + "RDD's checkpoint data (" + rddCpDataSize + ") is equal or larger than the " + + "whole RDD with checkpoint data (" + rddSize + ")" + ) + (rddSize - rddCpDataSize, rddPartitionSize) } /** @@ -373,8 +381,49 @@ class CheckpointSuite extends FunSuite with LocalSparkContext with Logging { val bytes = Utils.serialize(obj) Utils.deserialize[T](bytes) } + + /** + * Recursively force the initialization of the all members of an RDD and it parents. + */ + def initializeRdd(rdd: RDD[_]) { + rdd.partitions // forces the + rdd.dependencies.map(_.rdd).foreach(initializeRdd(_)) + } } +/** RDD partition that has large serialized size. */ +class FatPartition(val partition: Partition) extends Partition { + val bigData = new Array[Byte](10000) + def index: Int = partition.index +} + +/** RDD that has large serialized size. */ +class FatRDD(parent: RDD[Int]) extends RDD[Int](parent) { + val bigData = new Array[Byte](100000) + + protected def getPartitions: Array[Partition] = { + parent.partitions.map(p => new FatPartition(p)) + } + + def compute(split: Partition, context: TaskContext): Iterator[Int] = { + parent.compute(split.asInstanceOf[FatPartition].partition, context) + } +} + +/** Pair RDD that has large serialized size. */ +class FatPairRDD(parent: RDD[Int], _partitioner: Partitioner) extends RDD[(Int, Int)](parent) { + val bigData = new Array[Byte](100000) + + protected def getPartitions: Array[Partition] = { + parent.partitions.map(p => new FatPartition(p)) + } + + @transient override val partitioner = Some(_partitioner) + + def compute(split: Partition, context: TaskContext): Iterator[(Int, Int)] = { + parent.compute(split.asInstanceOf[FatPartition].partition, context).map(x => (x, x)) + } +} object CheckpointSuite { // This is a custom cogroup function that does not use mapValues like diff --git a/core/src/test/scala/org/apache/spark/DriverSuite.scala b/core/src/test/scala/org/apache/spark/DriverSuite.scala index 6d1695eae7..fb89537258 100644 --- a/core/src/test/scala/org/apache/spark/DriverSuite.scala +++ b/core/src/test/scala/org/apache/spark/DriverSuite.scala @@ -30,13 +30,15 @@ import org.apache.spark.util.Utils class DriverSuite extends FunSuite with Timeouts { test("driver should exit after finishing") { - assert(System.getenv("SPARK_HOME") != null) + val sparkHome = sys.env.get("SPARK_HOME").orElse(sys.props.get("spark.home")).get // Regression test for SPARK-530: "Spark driver process doesn't exit after finishing" val masters = Table(("master"), ("local"), ("local-cluster[2,1,512]")) forAll(masters) { (master: String) => failAfter(60 seconds) { - Utils.execute(Seq("./spark-class", "org.apache.spark.DriverWithoutCleanup", master), - new File(System.getenv("SPARK_HOME"))) + Utils.executeAndGetOutput( + Seq("./bin/spark-class", "org.apache.spark.DriverWithoutCleanup", master), + new File(sparkHome), + Map("SPARK_TESTING" -> "1", "SPARK_HOME" -> sparkHome)) } } } diff --git a/core/src/test/scala/org/apache/spark/FileServerSuite.scala b/core/src/test/scala/org/apache/spark/FileServerSuite.scala index c210dd5c3b..a2eb9a4e84 100644 --- a/core/src/test/scala/org/apache/spark/FileServerSuite.scala +++ b/core/src/test/scala/org/apache/spark/FileServerSuite.scala @@ -17,33 +17,49 @@ package org.apache.spark +import java.io._ +import java.util.jar.{JarEntry, JarOutputStream} + +import SparkContext._ import com.google.common.io.Files import org.scalatest.FunSuite -import java.io.{File, PrintWriter, FileReader, BufferedReader} -import SparkContext._ class FileServerSuite extends FunSuite with LocalSparkContext { @transient var tmpFile: File = _ - @transient var testJarFile: File = _ - - override def beforeEach() { - super.beforeEach() - // Create a sample text file - val tmpdir = new File(Files.createTempDir(), "test") - tmpdir.mkdir() - tmpFile = new File(tmpdir, "FileServerSuite.txt") - val pw = new PrintWriter(tmpFile) + @transient var tmpJarUrl: String = _ + + override def beforeAll() { + super.beforeAll() + val tmpDir = new File(Files.createTempDir(), "test") + tmpDir.mkdir() + + val textFile = new File(tmpDir, "FileServerSuite.txt") + val pw = new PrintWriter(textFile) pw.println("100") pw.close() - } + + val jarFile = new File(tmpDir, "test.jar") + val jarStream = new FileOutputStream(jarFile) + val jar = new JarOutputStream(jarStream, new java.util.jar.Manifest()) - override def afterEach() { - super.afterEach() - // Clean up downloaded file - if (tmpFile.exists) { - tmpFile.delete() + val jarEntry = new JarEntry(textFile.getName) + jar.putNextEntry(jarEntry) + + val in = new FileInputStream(textFile) + val buffer = new Array[Byte](10240) + var nRead = 0 + while (nRead <= 0) { + nRead = in.read(buffer, 0, buffer.length) + jar.write(buffer, 0, nRead) } + + in.close() + jar.close() + jarStream.close() + + tmpFile = textFile + tmpJarUrl = jarFile.toURI.toURL.toString } test("Distributing files locally") { @@ -77,18 +93,13 @@ class FileServerSuite extends FunSuite with LocalSparkContext { test ("Dynamically adding JARS locally") { sc = new SparkContext("local[4]", "test") - val sampleJarFile = getClass.getClassLoader.getResource("uncommons-maths-1.2.2.jar").getFile() - sc.addJar(sampleJarFile) - val testData = Array((1,1), (1,1), (2,1), (3,5), (2,3), (3,0)) - val result = sc.parallelize(testData).reduceByKey { (x,y) => - val fac = Thread.currentThread.getContextClassLoader() - .loadClass("org.uncommons.maths.Maths") - .getDeclaredMethod("factorial", classOf[Int]) - val a = fac.invoke(null, x.asInstanceOf[java.lang.Integer]).asInstanceOf[Long].toInt - val b = fac.invoke(null, y.asInstanceOf[java.lang.Integer]).asInstanceOf[Long].toInt - a + b - }.collect() - assert(result.toSet === Set((1,2), (2,7), (3,121))) + sc.addJar(tmpJarUrl) + val testData = Array((1, 1)) + sc.parallelize(testData).foreach { x => + if (Thread.currentThread.getContextClassLoader.getResource("FileServerSuite.txt") == null) { + throw new SparkException("jar not added") + } + } } test("Distributing files on a standalone cluster") { @@ -107,33 +118,24 @@ class FileServerSuite extends FunSuite with LocalSparkContext { test ("Dynamically adding JARS on a standalone cluster") { sc = new SparkContext("local-cluster[1,1,512]", "test") - val sampleJarFile = getClass.getClassLoader.getResource("uncommons-maths-1.2.2.jar").getFile() - sc.addJar(sampleJarFile) - val testData = Array((1,1), (1,1), (2,1), (3,5), (2,3), (3,0)) - val result = sc.parallelize(testData).reduceByKey { (x,y) => - val fac = Thread.currentThread.getContextClassLoader() - .loadClass("org.uncommons.maths.Maths") - .getDeclaredMethod("factorial", classOf[Int]) - val a = fac.invoke(null, x.asInstanceOf[java.lang.Integer]).asInstanceOf[Long].toInt - val b = fac.invoke(null, y.asInstanceOf[java.lang.Integer]).asInstanceOf[Long].toInt - a + b - }.collect() - assert(result.toSet === Set((1,2), (2,7), (3,121))) + sc.addJar(tmpJarUrl) + val testData = Array((1,1)) + sc.parallelize(testData).foreach { x => + if (Thread.currentThread.getContextClassLoader.getResource("FileServerSuite.txt") == null) { + throw new SparkException("jar not added") + } + } } test ("Dynamically adding JARS on a standalone cluster using local: URL") { sc = new SparkContext("local-cluster[1,1,512]", "test") - val sampleJarFile = getClass.getClassLoader.getResource("uncommons-maths-1.2.2.jar").getFile() - sc.addJar(sampleJarFile.replace("file", "local")) - val testData = Array((1,1), (1,1), (2,1), (3,5), (2,3), (3,0)) - val result = sc.parallelize(testData).reduceByKey { (x,y) => - val fac = Thread.currentThread.getContextClassLoader() - .loadClass("org.uncommons.maths.Maths") - .getDeclaredMethod("factorial", classOf[Int]) - val a = fac.invoke(null, x.asInstanceOf[java.lang.Integer]).asInstanceOf[Long].toInt - val b = fac.invoke(null, y.asInstanceOf[java.lang.Integer]).asInstanceOf[Long].toInt - a + b - }.collect() - assert(result.toSet === Set((1,2), (2,7), (3,121))) + sc.addJar(tmpJarUrl.replace("file", "local")) + val testData = Array((1,1)) + sc.parallelize(testData).foreach { x => + if (Thread.currentThread.getContextClassLoader.getResource("FileServerSuite.txt") == null) { + throw new SparkException("jar not added") + } + } } + } diff --git a/core/src/test/scala/org/apache/spark/deploy/worker/ExecutorRunnerTest.scala b/core/src/test/scala/org/apache/spark/deploy/worker/ExecutorRunnerTest.scala index 4cb4ddc9cd..f58b1ee05a 100644 --- a/core/src/test/scala/org/apache/spark/deploy/worker/ExecutorRunnerTest.scala +++ b/core/src/test/scala/org/apache/spark/deploy/worker/ExecutorRunnerTest.scala @@ -18,13 +18,15 @@ package org.apache.spark.deploy.worker import java.io.File + import org.scalatest.FunSuite + import org.apache.spark.deploy.{ExecutorState, Command, ApplicationDescription} class ExecutorRunnerTest extends FunSuite { test("command includes appId") { def f(s:String) = new File(s) - val sparkHome = sys.env("SPARK_HOME") + val sparkHome = sys.env.get("SPARK_HOME").orElse(sys.env.get("spark.home")).get val appDesc = new ApplicationDescription("app name", 8, 500, Command("foo", Seq(),Map()), sparkHome, "appUiUrl") val appId = "12345-worker321-9876" diff --git a/core/src/test/scala/org/apache/spark/rdd/RDDSuite.scala b/core/src/test/scala/org/apache/spark/rdd/RDDSuite.scala index 1383359f85..559ea051d3 100644 --- a/core/src/test/scala/org/apache/spark/rdd/RDDSuite.scala +++ b/core/src/test/scala/org/apache/spark/rdd/RDDSuite.scala @@ -84,6 +84,33 @@ class RDDSuite extends FunSuite with SharedSparkContext { assert(sc.union(Seq(nums, nums)).collect().toList === List(1, 2, 3, 4, 1, 2, 3, 4)) } + test("partitioner aware union") { + import SparkContext._ + def makeRDDWithPartitioner(seq: Seq[Int]) = { + sc.makeRDD(seq, 1) + .map(x => (x, null)) + .partitionBy(new HashPartitioner(2)) + .mapPartitions(_.map(_._1), true) + } + + val nums1 = makeRDDWithPartitioner(1 to 4) + val nums2 = makeRDDWithPartitioner(5 to 8) + assert(nums1.partitioner == nums2.partitioner) + assert(new PartitionerAwareUnionRDD(sc, Seq(nums1)).collect().toSet === Set(1, 2, 3, 4)) + + val union = new PartitionerAwareUnionRDD(sc, Seq(nums1, nums2)) + assert(union.collect().toSet === Set(1, 2, 3, 4, 5, 6, 7, 8)) + val nums1Parts = nums1.collectPartitions() + val nums2Parts = nums2.collectPartitions() + val unionParts = union.collectPartitions() + assert(nums1Parts.length === 2) + assert(nums2Parts.length === 2) + assert(unionParts.length === 2) + assert((nums1Parts(0) ++ nums2Parts(0)).toList === unionParts(0).toList) + assert((nums1Parts(1) ++ nums2Parts(1)).toList === unionParts(1).toList) + assert(union.partitioner === nums1.partitioner) + } + test("aggregate") { val pairs = sc.makeRDD(Array(("a", 1), ("b", 2), ("a", 2), ("c", 5), ("a", 3))) type StringMap = HashMap[String, Int] |