# # Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # from pyspark import SparkContext from pyspark.mllib.common import callMLlibFunc, callJavaFunc, _to_java_object_rdd from pyspark.mllib.linalg import SparseVector, _convert_to_vector __all__ = ['KMeansModel', 'KMeans'] class KMeansModel(object): """A clustering model derived from the k-means method. >>> from numpy import array >>> data = array([0.0,0.0, 1.0,1.0, 9.0,8.0, 8.0,9.0]).reshape(4,2) >>> model = KMeans.train( ... sc.parallelize(data), 2, maxIterations=10, runs=30, initializationMode="random") >>> model.predict(array([0.0, 0.0])) == model.predict(array([1.0, 1.0])) True >>> model.predict(array([8.0, 9.0])) == model.predict(array([9.0, 8.0])) True >>> model = KMeans.train(sc.parallelize(data), 2) >>> sparse_data = [ ... SparseVector(3, {1: 1.0}), ... SparseVector(3, {1: 1.1}), ... SparseVector(3, {2: 1.0}), ... SparseVector(3, {2: 1.1}) ... ] >>> model = KMeans.train(sc.parallelize(sparse_data), 2, initializationMode="k-means||") >>> model.predict(array([0., 1., 0.])) == model.predict(array([0, 1.1, 0.])) True >>> model.predict(array([0., 0., 1.])) == model.predict(array([0, 0, 1.1])) True >>> model.predict(sparse_data[0]) == model.predict(sparse_data[1]) True >>> model.predict(sparse_data[2]) == model.predict(sparse_data[3]) True >>> type(model.clusterCenters) """ def __init__(self, centers): self.centers = centers @property def clusterCenters(self): """Get the cluster centers, represented as a list of NumPy arrays.""" return self.centers def predict(self, x): """Find the cluster to which x belongs in this model.""" best = 0 best_distance = float("inf") x = _convert_to_vector(x) for i in xrange(len(self.centers)): distance = x.squared_distance(self.centers[i]) if distance < best_distance: best = i best_distance = distance return best class KMeans(object): @classmethod def train(cls, rdd, k, maxIterations=100, runs=1, initializationMode="k-means||"): """Train a k-means clustering model.""" # cache serialized data to avoid objects over head in JVM jcached = _to_java_object_rdd(rdd.map(_convert_to_vector), cache=True) model = callMLlibFunc("trainKMeansModel", jcached, k, maxIterations, runs, initializationMode) centers = callJavaFunc(rdd.context, model.clusterCenters) return KMeansModel([c.toArray() for c in centers]) def _test(): import doctest globs = globals().copy() globs['sc'] = SparkContext('local[4]', 'PythonTest', batchSize=2) (failure_count, test_count) = doctest.testmod(globs=globs, optionflags=doctest.ELLIPSIS) globs['sc'].stop() if failure_count: exit(-1) if __name__ == "__main__": _test()