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-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/fakes/entities/treatmentmatching.scala233
1 files changed, 0 insertions, 233 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/treatmentmatching.scala b/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/treatmentmatching.scala
deleted file mode 100644
index 190add6..0000000
--- a/src/main/scala/xyz/driver/pdsuidomain/fakes/entities/treatmentmatching.scala
+++ /dev/null
@@ -1,233 +0,0 @@
-package xyz.driver.pdsuidomain.fakes.entities
-
-import eu.timepit.refined.numeric.NonNegative
-import xyz.driver.entities.labels.Label
-import xyz.driver.fakes
-import xyz.driver.pdsuicommon.domain.{LongId, StringId}
-import xyz.driver.pdsuidomain.ListResponse
-import xyz.driver.pdsuidomain.entities._
-import eu.timepit.refined.{refineMV, refineV}
-import xyz.driver.core.auth.User
-
-object treatmentmatching {
- import common._
- import xyz.driver.core.generators
-
- final case class DraftPatientCriterionList(list: List[DraftPatientCriterion])
- object DraftPatientCriterionList {
- import spray.json._
- import xyz.driver.pdsuidomain.formats.json.patientcriterion._
-
- implicit val draftPatientCriterionListFormat: RootJsonFormat[DraftPatientCriterionList] =
- new RootJsonFormat[DraftPatientCriterionList] {
- override def write(obj: DraftPatientCriterionList): JsValue = {
- JsArray(obj.list.map(_.toJson).toVector)
- }
-
- override def read(json: JsValue): DraftPatientCriterionList = json match {
- case j: JsObject =>
- DraftPatientCriterionList(draftPatientCriterionListReader.read(j))
-
- case _ => deserializationError(s"Expected List of DraftPatientCriterion json object, but got $json")
- }
- }
- }
-
- def nextPatientAction: PatientHistory.Action =
- generators.oneOf[PatientHistory.Action](PatientHistory.Action.All)
-
- def nextPatientState: PatientHistory.State =
- generators.oneOf[PatientHistory.State](PatientHistory.State.All)
-
- def nextPatient(): Patient = Patient(
- id = nextUuidId[Patient],
- status = nextPatientStatus,
- name = nextFullName[Patient],
- dob = nextLocalDate,
- assignee = generators.nextOption(generators.nextId[User]),
- previousStatus = generators.nextOption(generators.oneOf[Patient.Status](Patient.Status.AllPrevious)),
- previousAssignee = generators.nextOption(generators.nextId[User]),
- lastActiveUserId = generators.nextOption(generators.nextId[User]),
- isUpdateRequired = generators.nextBoolean(),
- disease = nextCancerType,
- orderId = generators.nextId(),
- lastUpdate = nextLocalDateTime
- )
-
- def nextPatientLabel(): PatientLabel = PatientLabel(
- id = nextLongId[PatientLabel],
- patientId = nextUuidId[Patient],
- labelId = nextLongId[Label],
- score = generators.nextInt(100),
- primaryValue = fakes.entities.labels.nextLabelValue(),
- verifiedPrimaryValue = fakes.entities.labels.nextLabelValue(),
- isImplicitMatch = generators.nextBoolean(),
- isVisible = generators.nextBoolean()
- )
-
- def nextRichPatientLabel(): RichPatientLabel = RichPatientLabel(
- patientLabel = nextPatientLabel(),
- isVerified = generators.nextBoolean()
- )
-
- def nextPatientCriterion(): PatientCriterion = PatientCriterion(
- id = nextLongId[PatientCriterion],
- patientLabelId = nextLongId[PatientLabel],
- trialId = generators.nextInt(Int.MaxValue).toLong,
- nctId = nextStringId[Trial],
- criterionId = nextLongId[Criterion],
- criterionText = generators.nextString(),
- criterionValue = generators.nextOption(generators.nextBoolean()),
- criterionIsDefining = generators.nextBoolean(),
- eligibilityStatus = fakes.entities.labels.nextLabelValue(),
- verifiedEligibilityStatus = fakes.entities.labels.nextLabelValue(),
- isVerified = generators.nextBoolean(),
- isVisible = generators.nextBoolean(),
- lastUpdate = nextLocalDateTime,
- inclusion = generators.nextOption(generators.nextBoolean())
- )
-
- def nextDraftPatientCriterion(): DraftPatientCriterion = DraftPatientCriterion(
- id = nextLongId[PatientCriterion],
- eligibilityStatus = generators.nextOption(fakes.entities.labels.nextLabelValue()),
- isVerified = generators.nextOption(generators.nextBoolean())
- )
-
- def nextDraftPatientCriterionList(): DraftPatientCriterionList = {
- DraftPatientCriterionList(List.fill(3)(nextDraftPatientCriterion()))
- }
-
- def nextPatientCriterionArm(criterionId: LongId[PatientCriterion]): PatientCriterionArm = PatientCriterionArm(
- patientCriterionId = criterionId,
- armId = nextLongId[Arm],
- armName = generators.nextString()
- )
-
- def nextRichPatientCriterion(): RichPatientCriterion = {
- val patientCriterion = nextPatientCriterion()
- RichPatientCriterion(
- patientCriterion = patientCriterion,
- labelId = nextLongId[Label],
- armList = List(
- nextPatientCriterionArm(patientCriterion.id),
- nextPatientCriterionArm(patientCriterion.id),
- nextPatientCriterionArm(patientCriterion.id)
- )
- )
- }
-
- def nextPatientLabelEvidenceView(): PatientLabelEvidenceView = PatientLabelEvidenceView(
- id = nextLongId[PatientLabelEvidence],
- value = fakes.entities.labels.nextLabelValue(),
- evidenceText = generators.nextString(),
- documentId = generators.nextOption(nextLongId[Document]),
- evidenceId = generators.nextOption(nextLongId[ExtractedData]),
- reportId = generators.nextOption(nextUuidId[DirectReport]),
- documentType = nextDocumentType(),
- date = generators.nextOption(nextLocalDate),
- providerType = nextProviderType(),
- patientId = nextUuidId[Patient],
- labelId = nextLongId[Label],
- isImplicitMatch = generators.nextBoolean()
- )
-
- def nextPatientTrialArmGroupView(trialId: StringId[Trial]): PatientTrialArmGroupView = PatientTrialArmGroupView(
- id = nextLongId[PatientTrialArmGroup],
- patientId = nextUuidId[Patient],
- trialId = trialId,
- hypothesisId = nextUuidId[Hypothesis],
- eligibilityStatus = fakes.entities.labels.nextLabelValue(),
- verifiedEligibilityStatus = fakes.entities.labels.nextLabelValue(),
- isVerified = generators.nextBoolean()
- )
-
- def nextRichPatientEligibleTrial(): RichPatientEligibleTrial = {
- val patientCriterionId = nextLongId[PatientCriterion]
- val trial = trialcuration.nextTrial()
- RichPatientEligibleTrial(
- trial = trial,
- group = nextPatientTrialArmGroupView(trial.id),
- arms = List(
- nextPatientCriterionArm(patientCriterionId),
- nextPatientCriterionArm(patientCriterionId),
- nextPatientCriterionArm(patientCriterionId)
- )
- )
- }
-
- def nextPatientHypothesis(): PatientHypothesis = PatientHypothesis(
- id = nextUuidId[PatientHypothesis],
- patientId = nextUuidId[Patient],
- hypothesisId = nextUuidId[Hypothesis],
- rationale = Option(generators.nextString()),
- matchedTrials = refineV[NonNegative](generators.nextInt(Int.MaxValue).toLong) match {
- case Left(_) => refineMV[NonNegative](0)
- case Right(nonNegative) => nonNegative
- }
- )
-
- def nextPatientIssue(): PatientIssue = PatientIssue(
- id = nextLongId[PatientIssue],
- userId = generators.nextId[User],
- patientId = nextUuidId[Patient],
- lastUpdate = nextLocalDateTime,
- isDraft = generators.nextBoolean(),
- text = generators.nextString(),
- archiveRequired = generators.nextBoolean()
- )
-
- def nextPatientHistory(): PatientHistory = PatientHistory(
- id = nextLongId[PatientHistory],
- executor = generators.nextId[User],
- patientId = nextUuidId[Patient],
- state = nextPatientState,
- action = nextPatientAction,
- created = nextLocalDateTime
- )
-
- def nextPatientListResponse(): ListResponse[Patient] = {
- val xs: Seq[Patient] = Seq.fill(3)(nextPatient())
- nextListResponse(xs)
- }
-
- def nextRichPatientLabelListResponse(): ListResponse[RichPatientLabel] = {
- val xs: Seq[RichPatientLabel] = Seq.fill(3)(nextRichPatientLabel())
- nextListResponse(xs)
- }
-
- def nextPatientLabelListResponse(): ListResponse[PatientLabel] = {
- val xs: Seq[PatientLabel] = Seq.fill(3)(nextPatientLabel())
- nextListResponse(xs)
- }
-
- def nextRichPatientCriterionListResponse(): ListResponse[RichPatientCriterion] = {
- val xs: Seq[RichPatientCriterion] = Seq.fill(3)(nextRichPatientCriterion())
- nextListResponse(xs)
- }
-
- def nextRichPatientEligibleTrialListResponse(): ListResponse[RichPatientEligibleTrial] = {
- val xs: Seq[RichPatientEligibleTrial] = Seq.fill(3)(nextRichPatientEligibleTrial())
- nextListResponse(xs)
- }
-
- def nextPatientHypothesisListResponse(): ListResponse[PatientHypothesis] = {
- val xs: Seq[PatientHypothesis] = Seq.fill(3)(nextPatientHypothesis())
- nextListResponse(xs)
- }
-
- def nextPatientLabelEvidenceViewListResponse(): ListResponse[PatientLabelEvidenceView] = {
- val xs: Seq[PatientLabelEvidenceView] = Seq.fill(3)(nextPatientLabelEvidenceView())
- nextListResponse(xs)
- }
-
- def nextPatientIssuesListResponse(): ListResponse[PatientIssue] = {
- val xs: Seq[PatientIssue] = Seq.fill(3)(nextPatientIssue())
- nextListResponse(xs)
- }
-
- def nextPatientHistoryListResponse(): ListResponse[PatientHistory] = {
- val xs: Seq[PatientHistory] = Seq.fill(3)(nextPatientHistory())
- nextListResponse(xs)
- }
-
-}