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-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala173
1 files changed, 0 insertions, 173 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala
deleted file mode 100644
index 94e1c63..0000000
--- a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala
+++ /dev/null
@@ -1,173 +0,0 @@
-package xyz.driver.pdsuidomain.services.rest
-
-import scala.concurrent.{ExecutionContext, Future}
-import akka.NotUsed
-import akka.stream.scaladsl.Source
-import akka.util.ByteString
-import akka.http.scaladsl.marshalling.Marshal
-import akka.http.scaladsl.model._
-import akka.stream.Materializer
-import xyz.driver.core.rest.{Pagination => _, _}
-import xyz.driver.pdsuicommon.db._
-import xyz.driver.pdsuicommon.domain._
-import xyz.driver.pdsuidomain.entities._
-import xyz.driver.pdsuidomain.entities.export.trial.ExportTrialWithLabels
-import xyz.driver.pdsuidomain.services.TrialService
-import spray.json.DefaultJsonProtocol._
-import xyz.driver.entities.patient.CancerType
-import xyz.driver.entities.users.AuthUserInfo
-import xyz.driver.pdsuidomain.ListResponse
-import xyz.driver.pdsuidomain.formats.json.export._
-
-class RestTrialService(transport: ServiceTransport, baseUri: Uri)(implicit protected val materializer: Materializer,
- protected val exec: ExecutionContext)
- extends TrialService with RestHelper {
-
- import akka.http.scaladsl.marshallers.sprayjson.SprayJsonSupport._
- import xyz.driver.pdsuidomain.formats.json.listresponse._
- import xyz.driver.pdsuidomain.formats.json.trial._
- import xyz.driver.pdsuidomain.services.TrialService._
-
- def getById(id: StringId[Trial])(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetByIdReply] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/trial/$id"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[Trial](response)
- } yield {
- GetByIdReply.Entity(reply)
- }
- }
-
- def getTrialWithLabels(trialId: StringId[Trial], cancerType: CancerType)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetTrialWithLabelsReply] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/export/trial/$cancerType/$trialId"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[ExportTrialWithLabels](response)
- } yield {
- GetTrialWithLabelsReply.Entity(reply)
- }
- }
-
- def getTrialsWithLabels(cancerType: CancerType)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetTrialsWithLabelsReply] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/export/trial/$cancerType"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[Seq[ExportTrialWithLabels]](response)
- } yield {
- GetTrialsWithLabelsReply.EntityList(reply)
- }
- }
-
- def getPdfSource(trialId: StringId[Trial])(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]
- ): Future[Source[ByteString, NotUsed]] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/trial/$trialId/source"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[HttpEntity](response)
- } yield {
- reply.dataBytes.mapMaterializedValue(_ => NotUsed)
- }
- }
-
- def getHtmlSource(trialId: StringId[Trial])(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]
- ): Future[Source[ByteString, NotUsed]] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/trial/$trialId/source.html"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[HttpEntity](response)
- } yield {
- reply.dataBytes.mapMaterializedValue(_ => NotUsed)
- }
- }
-
- def getAll(filter: SearchFilterExpr = SearchFilterExpr.Empty,
- sorting: Option[Sorting] = None,
- pagination: Option[Pagination] = None)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetListReply] = {
- val request = HttpRequest(
- HttpMethods.GET,
- endpointUri(baseUri, "/v1/trial", filterQuery(filter) ++ sortingQuery(sorting) ++ paginationQuery(pagination)))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[ListResponse[Trial]](response)
- } yield {
- GetListReply.EntityList(reply.items, reply.meta.itemsCount, reply.meta.lastUpdate)
- }
- }
-
- def update(origTrial: Trial, draftTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] = {
- val id = origTrial.id.id
- for {
- entity <- Marshal(draftTrial).to[RequestEntity]
- request = HttpRequest(HttpMethods.PATCH, endpointUri(baseUri, s"/v1/trial/$id")).withEntity(entity)
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[Trial](response)
- } yield {
- UpdateReply.Updated(reply)
- }
- }
-
- private def singleAction(origTrial: Trial, action: String, comment: Option[String] = None)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] = {
-
- val query = comment match {
- case Some(s) => Seq("comment" -> s)
- case None => Seq.empty[(String, String)]
- }
-
- val id = origTrial.id.id
- val request = HttpRequest(HttpMethods.POST, endpointUri(baseUri, s"/v1/trial/$id/$action", query))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[Trial](response)
- } yield {
- UpdateReply.Updated(reply)
- }
- }
-
- def start(origTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "start")
-
- def submit(origTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "submit")
-
- def restart(origTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "restart")
-
- def flag(origTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "flag")
-
- def resolve(origTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "resolve")
-
- def archive(origTrial: Trial, comment: Option[String])(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "archive", comment)
-
- def unassign(origTrial: Trial)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] =
- singleAction(origTrial, "unassign")
-
- override def addTrial(trial: TrialCreationRequest)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[Trial] = {
- for {
- entity <- Marshal(trial).to[RequestEntity]
- request = HttpRequest(HttpMethods.POST, endpointUri(baseUri, s"/v1/trial/${trial.nctId}")).withEntity(entity)
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[Trial](response)
- } yield {
- reply
- }
- }
-}