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author | Kseniya Tomskikh <ktomskih@datamonsters.co> | 2017-10-02 18:37:52 +0700 |
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committer | Kseniya Tomskikh <ktomskih@datamonsters.co> | 2017-10-02 18:37:52 +0700 |
commit | d0e3c6f37347142a3ef5eab871dde47ea70af304 (patch) | |
tree | a87d24b1b5d6489576f00fe446f05b5110d62cc0 /src/main/scala/xyz/driver/pdsuicommon | |
parent | 283ca02360949143ffe7ee8ad87d51902426b450 (diff) | |
parent | 1913870abec9e31d080f6858d0fc296445852cc6 (diff) | |
download | rest-query-d0e3c6f37347142a3ef5eab871dde47ea70af304.tar.gz rest-query-d0e3c6f37347142a3ef5eab871dde47ea70af304.tar.bz2 rest-query-d0e3c6f37347142a3ef5eab871dde47ea70af304.zip |
Merge branch 'master' into synch-refactor
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuicommon')
4 files changed, 93 insertions, 16 deletions
diff --git a/src/main/scala/xyz/driver/pdsuicommon/db/SlickPostgresQueryBuilder.scala b/src/main/scala/xyz/driver/pdsuicommon/db/SlickPostgresQueryBuilder.scala index f882441..a56ab9a 100644 --- a/src/main/scala/xyz/driver/pdsuicommon/db/SlickPostgresQueryBuilder.scala +++ b/src/main/scala/xyz/driver/pdsuicommon/db/SlickPostgresQueryBuilder.scala @@ -2,8 +2,7 @@ package xyz.driver.pdsuicommon.db import java.time.{LocalDateTime, ZoneOffset} -import slick.driver.JdbcProfile -import slick.jdbc.GetResult +import slick.jdbc.{JdbcProfile, GetResult} import xyz.driver.core.database.SlickDal import xyz.driver.pdsuicommon.logging._ diff --git a/src/main/scala/xyz/driver/pdsuicommon/db/SlickQueryBuilder.scala b/src/main/scala/xyz/driver/pdsuicommon/db/SlickQueryBuilder.scala index ab2757b..0daa84d 100644 --- a/src/main/scala/xyz/driver/pdsuicommon/db/SlickQueryBuilder.scala +++ b/src/main/scala/xyz/driver/pdsuicommon/db/SlickQueryBuilder.scala @@ -3,8 +3,7 @@ package xyz.driver.pdsuicommon.db import java.sql.PreparedStatement import java.time.LocalDateTime -import slick.driver.JdbcProfile -import slick.jdbc.{PositionedParameters, SQLActionBuilder, SetParameter} +import slick.jdbc.{JdbcProfile, PositionedParameters, SQLActionBuilder, SetParameter} import xyz.driver.pdsuicommon.db.Sorting.{Dimension, Sequential} import xyz.driver.pdsuicommon.db.SortingOrder.{Ascending, Descending} diff --git a/src/main/scala/xyz/driver/pdsuicommon/parsers/SearchFilterParser.scala b/src/main/scala/xyz/driver/pdsuicommon/parsers/SearchFilterParser.scala index e0adeb8..e46e11c 100644 --- a/src/main/scala/xyz/driver/pdsuicommon/parsers/SearchFilterParser.scala +++ b/src/main/scala/xyz/driver/pdsuicommon/parsers/SearchFilterParser.scala @@ -15,10 +15,7 @@ object SearchFilterParser { private object BinaryAtomFromTuple { def unapply(input: (SearchFilterExpr.Dimension, (String, Any))): Option[SearchFilterExpr.Atom.Binary] = { val (dimensionName, (strOperation, value)) = input - val updatedValue = value match { - case s: String => s.safeTrim - case a => a - } + val updatedValue = trimIfString(value) parseOperation(strOperation.toLowerCase).map { op => SearchFilterExpr.Atom.Binary(dimensionName, op, updatedValue.asInstanceOf[AnyRef]) @@ -30,15 +27,24 @@ object SearchFilterParser { // Compiler warning: unchecked since it is eliminated by erasure, if we user Seq[String] def unapply(input: (SearchFilterExpr.Dimension, (String, Seq[_]))): Option[SearchFilterExpr.Atom.NAry] = { val (dimensionName, (strOperation, xs)) = input + val updatedValues = xs.map(trimIfString) + if (strOperation.toLowerCase == "in") { - val values = xs.asInstanceOf[Seq[String]].map(_.safeTrim) - Some(SearchFilterExpr.Atom.NAry(dimensionName, SearchFilterNAryOperation.In, values)) + Some( + SearchFilterExpr.Atom + .NAry(dimensionName, SearchFilterNAryOperation.In, updatedValues.map(_.asInstanceOf[AnyRef]))) } else { None } } } + private def trimIfString(value: Any) = + value match { + case s: String => s.safeTrim + case a => a + } + private val operationsMapping = { import xyz.driver.pdsuicommon.db.SearchFilterBinaryOperation._ @@ -96,7 +102,7 @@ object SearchFilterParser { private val nAryValueParser: Parser[String] = P(CharPred(_ != ',').rep(min = 1).!) - private val longParser: Parser[Long] = P(CharIn('0' to '9').rep(1).!.map(_.toLong)) + private val longParser: Parser[Long] = P(CharIn('0' to '9').rep(min = 1).!.map(_.toLong)) private val binaryAtomParser: Parser[SearchFilterExpr.Atom.Binary] = P( dimensionParser ~ whitespaceParser ~ ( @@ -109,7 +115,8 @@ object SearchFilterParser { private val nAryAtomParser: Parser[SearchFilterExpr.Atom.NAry] = P( dimensionParser ~ whitespaceParser ~ ( - naryOperatorParser ~/ whitespaceParser ~/ nAryValueParser.!.rep(min = 1, sep = ",") + naryOperatorParser ~ whitespaceParser ~ + (longParser.rep(min = 1, sep = ",") | nAryValueParser.!.rep(min = 1, sep = ",")) ) ~ End ).map { case NAryAtomFromTuple(atom) => atom diff --git a/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala b/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala index 6c87858..83c4e6f 100644 --- a/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala +++ b/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala @@ -4,7 +4,7 @@ import java.time.{LocalDate, LocalDateTime} import io.swagger.models.properties.Property import spray.json.JsValue -import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId} +import xyz.driver.pdsuicommon.domain.{LongId, StringId, TextJson, UuidId} import xyz.driver.pdsuidomain.entities._ import xyz.driver.pdsuidomain.formats.json.sprayformats.arm._ import xyz.driver.pdsuidomain.formats.json.sprayformats.criterion._ @@ -15,25 +15,29 @@ import xyz.driver.pdsuidomain.formats.json.sprayformats.trial._ import xyz.driver.pdsuidomain.formats.json.sprayformats.trialhistory._ import xyz.driver.pdsuidomain.formats.json.sprayformats.trialissue._ import xyz.driver.core.swagger.CustomSwaggerJsonConverter._ +import xyz.driver.pdsuicommon.concurrent.BridgeUploadQueue import xyz.driver.pdsuidomain.services.CriterionService.RichCriterion +import xyz.driver.pdsuidomain.services.ExtractedDataService.RichExtractedData + +import scala.collection.immutable object CustomSwaggerJsonFormats { - val customCommonProperties = Map[Class[_], Property]( + val customCommonProperties = immutable.Map[Class[_], Property]( classOf[LocalDateTime] -> stringProperty(example = Some("2010-12-31'T'18:59:59Z")), classOf[LocalDate] -> stringProperty(example = Some("2010-12-31")), classOf[UuidId[_]] -> stringProperty(example = Some("370b0450-35cb-4aab-ba74-0145be75add5")), classOf[StringId[_]] -> stringProperty(), classOf[LongId[_]] -> stringProperty() ) - val customTrialCurationProperties = Map[Class[_], Property]( + val customTrialCurationProperties = immutable.Map[Class[_], Property]( classOf[Trial.Status] -> stringProperty(), classOf[Trial.Condition] -> stringProperty(), classOf[TrialHistory.Action] -> stringProperty(), classOf[TrialHistory.State] -> stringProperty() ) ++ customCommonProperties - val customTrialCurationObjectsExamples = Map[Class[_], JsValue]( + val customTrialCurationObjectsExamples = immutable.Map[Class[_], JsValue]( classOf[Trial] -> trialWriter.write(xyz.driver.pdsuidomain.fakes.entities.trialcuration.nextTrial()), classOf[Arm] -> armFormat.write(xyz.driver.pdsuidomain.fakes.entities.trialcuration.nextArm()), classOf[TrialHistory] -> trialHistoryFormat.write( @@ -52,4 +56,72 @@ object CustomSwaggerJsonFormats { xyz.driver.pdsuidomain.fakes.entities.trialcuration.nextStudyDesign()) ) + // records-processing-service + object Rep { + import xyz.driver.pdsuidomain.fakes.entities.rep + import xyz.driver.pdsuidomain.formats.json.sprayformats.document + import xyz.driver.pdsuidomain.formats.json.sprayformats.documentissue + import xyz.driver.pdsuidomain.formats.json.sprayformats.documenthistory + import xyz.driver.pdsuidomain.formats.json.sprayformats.record + import xyz.driver.pdsuidomain.formats.json.sprayformats.recordissue + import xyz.driver.pdsuidomain.formats.json.sprayformats.recordhistory + import xyz.driver.pdsuidomain.formats.json.sprayformats.bridgeuploadqueue + import xyz.driver.pdsuidomain.formats.json.sprayformats.extracteddata + + val customRepObjectsExamples = immutable.Map[Class[_], JsValue]( + classOf[Document] -> + document.documentFormat.write(rep.DocumentGen.nextDocument()), + classOf[Document.Meta] -> + document.documentMetaFormat.write(rep.DocumentGen.nextDocumentMeta()), + classOf[TextJson[Document.Meta]] -> + document.fullDocumentMetaFormat.write(rep.DocumentGen.nextDocumentMetaJson()), + classOf[Document.RequiredType] -> + document.requiredTypeFormat.write(rep.DocumentGen.nextDocumentRequiredType()), + classOf[Document.Status] -> + document.documentStatusFormat.write(rep.DocumentGen.nextDocumentStatus()), + classOf[DocumentIssue] -> + documentissue.documentIssueFormat.write(rep.DocumentGen.nextDocumentIssue()), + classOf[DocumentHistory] -> + documenthistory.documentHistoryFormat.write(rep.DocumentGen.nextDocumentHistory()), + classOf[DocumentHistory.Action] -> + documenthistory.documentActionFormat.write(rep.DocumentGen.nextDocumentHistoryAction()), + classOf[DocumentHistory.State] -> + documenthistory.documentStateFormat.write(rep.DocumentGen.nextDocumentHistoryState()), + classOf[ProviderType] -> + record.providerTypeFormat.write(rep.MedicalRecordGen.nextProviderType()), + classOf[TextJson[List[MedicalRecord.Meta]]] -> + record.recordMetaFormat.write(rep.MedicalRecordGen.nextMedicalRecordMetasJson()), + classOf[MedicalRecord] -> + record.recordFormat.write(rep.MedicalRecordGen.nextMedicalRecord()), + classOf[MedicalRecord.Meta] -> + record.recordMetaTypeFormat.write(rep.MedicalRecordGen.nextMedicalRecordMeta()), + classOf[MedicalRecord.Status] -> + record.recordStatusFormat.write(rep.MedicalRecordGen.nextMedicalRecordStatus()), + classOf[MedicalRecordIssue] -> + recordissue.recordIssueFormat.write(rep.MedicalRecordGen.nextMedicalRecordIssue()), + classOf[MedicalRecordHistory] -> + recordhistory.recordHistoryFormat.write(rep.MedicalRecordGen.nextMedicalRecordHistory()), + classOf[MedicalRecordHistory.Action] -> + recordhistory.recordActionFormat.write(rep.MedicalRecordGen.nextMedicalRecordHistoryAction()), + classOf[MedicalRecordHistory.State] -> + recordhistory.recordStateFormat.write(rep.MedicalRecordGen.nextMedicalRecordHistoryState()), + classOf[BridgeUploadQueue.Item] -> + bridgeuploadqueue.queueUploadItemFormat.write(rep.BridgeUploadQueueGen.nextBridgeUploadQueueItem()), + classOf[ExtractedData.Meta] -> + extracteddata.extractedDataMetaFormat.write(rep.ExtractedDataGen.nextExtractedDataMeta()), + classOf[ExtractedData.Meta.Evidence] -> + extracteddata.metaEvidenceFormat.write(rep.ExtractedDataGen.nextExtractedDataMetaEvidence()), + classOf[ExtractedData.Meta.Keyword] -> + extracteddata.metaKeywordFormat.write(rep.ExtractedDataGen.nextExtractedDataMetaKeyword()), + classOf[ExtractedData.Meta.TextLayerPosition] -> + extracteddata.metaTextLayerPositionFormat.write(rep.ExtractedDataGen.nextExtractedDataMetaTextLayerPosition()), + classOf[TextJson[ExtractedData.Meta]] -> + extracteddata.fullExtractedDataMetaFormat.write(rep.ExtractedDataGen.nextExtractedDataMetaJson()), + classOf[RichExtractedData] -> + extracteddata.extractedDataFormat.write(rep.ExtractedDataGen.nextRichExtractedData()), + classOf[ExtractedDataLabel] -> + extracteddata.extractedDataLabelWriter.write(rep.ExtractedDataGen.nextExtractedDataLabel()) + ) + } + } |