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authorvlad <vlad@driver.xyz>2017-10-09 12:49:02 -0700
committervlad <vlad@driver.xyz>2017-10-09 12:49:02 -0700
commiteeeb6d90f1c6882f0b3d765022b114d97e4dba40 (patch)
tree7fd813bcba7a3e44f5694bfbf0618ea93d64b5f8 /src/main/scala/xyz/driver/pdsuidomain/entities/export
parent7d8712a62d30b412717e1b730c0ad267cd207aa4 (diff)
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Getting rid of the FuzzyValues, Name as a string, and conditionv0.7.1
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuidomain/entities/export')
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala12
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala36
2 files changed, 4 insertions, 44 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala
index 1f06e0d..385bbbe 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala
@@ -3,7 +3,7 @@ package xyz.driver.pdsuidomain.entities.export.trial
import xyz.driver.entities.labels.Label
import xyz.driver.pdsuicommon.domain._
import xyz.driver.pdsuicommon.logging._
-import xyz.driver.pdsuidomain.entities.{Arm, Criterion, RawTrialLabel}
+import xyz.driver.pdsuidomain.entities.{Arm, Criterion}
final case class ExportTrialLabelCriterion(criterionId: LongId[Criterion],
value: Option[Boolean],
@@ -20,14 +20,4 @@ object ExportTrialLabelCriterion {
phi"TrialLabelCriterion(criterionId=$criterionId, value=$value, labelId=$labelId, " +
phi"criteria=${Unsafe(criteria)}, isCompound=$isCompound, isDefining=$isDefining)"
}
-
- def fromRaw(x: RawTrialLabel, armIds: Set[LongId[Arm]]) = ExportTrialLabelCriterion(
- criterionId = x.criterionId,
- value = x.value,
- labelId = x.labelId,
- armIds = armIds,
- criteria = x.criteria,
- isCompound = x.isCompound,
- isDefining = x.isDefining
- )
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala
index cf55694..3a9434b 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala
@@ -4,13 +4,11 @@ import java.time.LocalDateTime
import xyz.driver.pdsuicommon.domain._
import xyz.driver.pdsuicommon.logging._
-import xyz.driver.pdsuidomain.entities.{RawTrialLabel, Trial}
-
-import scala.collection.breakOut
+import xyz.driver.pdsuidomain.entities.Trial
final case class ExportTrialWithLabels(nctId: StringId[Trial],
trialId: UuidId[Trial],
- condition: String,
+ disease: String,
lastReviewed: LocalDateTime,
labelVersion: Long,
arms: List[ExportTrialArm],
@@ -20,35 +18,7 @@ object ExportTrialWithLabels {
implicit def toPhiString(x: ExportTrialWithLabels): PhiString = {
import x._
- phi"TrialWithLabels(nctId=$nctId, trialId=$trialId, condition=${Unsafe(condition)}, " +
+ phi"TrialWithLabels(nctId=$nctId, trialId=$trialId, disease=${Unsafe(disease)}, " +
phi"lastReviewed=$lastReviewed, labelVersion=${Unsafe(labelVersion)}, arms=$arms, criteria=$criteria)"
}
-
- def fromRaw(rawData: List[RawTrialLabel]): ExportTrialWithLabels = {
- val trials: Set[StringId[Trial]] = rawData.map(_.nctId)(breakOut)
-
- assert(trials.size == 1, "There are more than one trial in the rawData")
- val trial = rawData.head
-
- ExportTrialWithLabels(
- nctId = trial.nctId,
- trialId = trial.trialId,
- condition = trial.condition,
- lastReviewed = trial.lastReviewed,
- labelVersion = 1, // TODO It is needed to replace this mock label version.
- arms = rawData
- .groupBy(_.armId)
- .map {
- case (armId, rawTrials) =>
- ExportTrialArm(armId, rawTrials.head.armName)
- }(breakOut),
- criteria = rawData
- .groupBy(x => (x.criterionId, x.labelId))
- .map {
- case (_, rawTrialLabels) =>
- val armIds = rawTrialLabels.map(_.criterionArmId).toSet
- ExportTrialLabelCriterion.fromRaw(rawTrialLabels.head, armIds)
- }(breakOut)
- )
- }
}