fix merge conflicts with master

11 files changed, 27 insertions, 61 deletions

diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala
index dbd0a43..61e0e7f 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala
@@ -3,7 +3,7 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
 import java.time.{LocalDate, LocalDateTime, ZoneId, ZonedDateTime}
 
 import spray.json._
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId, StringId, UuidId}
+import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId}
 
 object common {
 
@@ -55,14 +55,6 @@ object common {
     }
   }
 
-  implicit def fuzzyValueFormat: RootJsonFormat[FuzzyValue] = new RootJsonFormat[FuzzyValue] {
-    override def write(value: FuzzyValue): JsString = JsString(FuzzyValue.valueToString(value))
-    override def read(json: JsValue): FuzzyValue = json match {
-      case JsString(value) => FuzzyValue.fromString(value)
-      case _               => deserializationError(s"Expected value as FuzzyValue, but got $json")
-    }
-  }
-
   implicit val integerFormat: RootJsonFormat[Integer] = new RootJsonFormat[Integer] {
     override def write(obj: Integer): JsNumber = JsNumber(obj.intValue())
     override def read(json: JsValue): Integer = json match {
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala
index 6c33fe5..69e8b75 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala
@@ -26,7 +26,7 @@ object document {
     "PN"  -> RequiredType.PN
   )
 
-  implicit val documentMetaFormat: RootJsonFormat[Meta] = jsonFormat3(Meta.apply)
+  implicit val documentMetaFormat: RootJsonFormat[Meta] = jsonFormat2(Meta.apply)
 
   implicit val documentTypeFormat: RootJsonFormat[DocumentType] = new RootJsonFormat[DocumentType] {
     override def read(json: JsValue): DocumentType = json match {
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
index 39d5c59..85d614d 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
@@ -5,6 +5,7 @@ import xyz.driver.entities.labels.Label
 import xyz.driver.pdsuidomain.entities.{Arm, Criterion}
 import xyz.driver.pdsuidomain.entities.export.patient._
 import xyz.driver.pdsuidomain.entities.export.trial.{ExportTrialArm, ExportTrialLabelCriterion, ExportTrialWithLabels}
+import xyz.driver.formats.json.labels._
 
 object export {
   import DefaultJsonProtocol._
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala
index d6eadbd..5d5585a 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala
@@ -1,10 +1,11 @@
 package xyz.driver.pdsuidomain.formats.json.sprayformats
 
 import spray.json._
-import xyz.driver.entities.labels.{Label, LabelCategory}
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId, TextJson}
+import xyz.driver.entities.labels.{Label, LabelCategory, LabelValue}
+import xyz.driver.pdsuicommon.domain.{LongId, TextJson}
 import xyz.driver.pdsuidomain.entities._
 import xyz.driver.pdsuidomain.services.ExtractedDataService.RichExtractedData
+import xyz.driver.formats.json.labels._
 
 object extracteddata {
   import DefaultJsonProtocol._
@@ -44,7 +45,7 @@ object extracteddata {
 
       val value = fields
         .get("value")
-        .map(_.convertTo[FuzzyValue])
+        .map(_.convertTo[LabelValue])
 
       ExtractedDataLabel(
         id = LongId(0),
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala
index 95c0674..2b0dfe5 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala
@@ -3,6 +3,8 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
 import spray.json._
 import xyz.driver.core.json.EnumJsonFormat
 import xyz.driver.pdsuidomain.entities._
+import xyz.driver.formats.json.common._
+import xyz.driver.formats.json.patient._
 
 object patient {
   import DefaultJsonProtocol._
@@ -38,7 +40,7 @@ object patient {
         "previousAssignee" -> patient.previousAssignee.toJson,
         "lastActiveUser"   -> patient.lastActiveUserId.toJson,
         "lastUpdate"       -> patient.lastUpdate.toJson,
-        "condition"        -> patient.condition.toJson,
+        "disease"          -> patient.disease.toJson,
         "orderId"          -> patient.orderId.toJson
       )
   }
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala
index affb346..7e8c220 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala
@@ -1,9 +1,10 @@
 package xyz.driver.pdsuidomain.formats.json.sprayformats
 
 import spray.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
 import xyz.driver.pdsuidomain.entities._
 import xyz.driver.pdsuidomain.services.PatientCriterionService.{DraftPatientCriterion, RichPatientCriterion}
+import xyz.driver.formats.json.labels._
 
 object patientcriterion {
   import DefaultJsonProtocol._
@@ -14,13 +15,13 @@ object patientcriterion {
       val eligibilityStatus = if (fields.contains("eligibilityStatus")) {
         fields
           .get("eligibilityStatus")
-          .map(_.convertTo[FuzzyValue])
+          .map(_.convertTo[LabelValue])
       } else orig.eligibilityStatus
 
       val verifiedEligibilityStatus = if (fields.contains("verifiedEligibilityStatus")) {
         fields
           .get("verifiedEligibilityStatus")
-          .map(_.convertTo[FuzzyValue])
+          .map(_.convertTo[LabelValue])
       } else orig.verifiedEligibilityStatus
 
       orig.copy(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala
index 0520ef2..746c7b4 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala
@@ -2,6 +2,7 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
 
 import spray.json._
 import xyz.driver.pdsuidomain.entities.PatientLabel
+import xyz.driver.formats.json.labels._
 
 object patientdefiningcriteria {
   import DefaultJsonProtocol._
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala
index 041d9da..342d3a8 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala
@@ -3,6 +3,7 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
 import spray.json._
 import xyz.driver.pdsuidomain.entities._
 import xyz.driver.pdsuidomain.services.PatientEligibleTrialService.RichPatientEligibleTrial
+import xyz.driver.formats.json.labels._
 
 object patienteligibletrial {
   import DefaultJsonProtocol._
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala
index b36949e..57dca1e 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala
@@ -1,9 +1,12 @@
 package xyz.driver.pdsuidomain.formats.json.sprayformats
 
 import spray.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
 import xyz.driver.pdsuidomain.entities._
 import xyz.driver.pdsuidomain.services.PatientLabelService.RichPatientLabel
+import xyz.driver.formats.json.labels._
+import xyz.driver.pdsuidomain.formats.json.sprayformats.record._
+import xyz.driver.pdsuidomain.formats.json.sprayformats.document._
 
 object patientlabel {
   import DefaultJsonProtocol._
@@ -13,12 +16,12 @@ object patientlabel {
     case JsObject(fields) =>
       val primaryValue = fields
         .get("primaryValue")
-        .map(_.convertTo[Option[FuzzyValue]])
+        .map(_.convertTo[Option[LabelValue]])
         .getOrElse(orig.primaryValue)
 
       val verifiedPrimaryValue = fields
         .get("verifiedPrimaryValue")
-        .map(_.convertTo[Option[FuzzyValue]])
+        .map(_.convertTo[Option[LabelValue]])
         .getOrElse(orig.verifiedPrimaryValue)
 
       orig.copy(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala
index 8eef44a..65687c1 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala
@@ -67,7 +67,6 @@ object record {
     override def write(obj: Duplicate) =
       JsObject(
         "type"              -> "duplicate".toJson,
-        "predicted"         -> obj.predicted.toJson,
         "startPage"         -> obj.startPage.toJson,
         "endPage"           -> obj.endPage.toJson,
         "startOriginalPage" -> obj.startOriginalPage.toJson,
@@ -76,10 +75,6 @@ object record {
 
     override def read(json: JsValue): Duplicate = json match {
       case JsObject(fields) =>
-        val predicted = fields
-          .get("predicted")
-          .map(_.convertTo[Boolean])
-
         val startPage = fields
           .get("startPage")
           .map(_.convertTo[Double])
@@ -101,7 +96,6 @@ object record {
           .map(_.convertTo[Double])
 
         Duplicate(
-          predicted = predicted,
           startPage = startPage,
           endPage = endPage,
           startOriginalPage = startOriginalPage,
@@ -114,27 +108,16 @@ object record {
 
   implicit val reorderMetaFormat: RootJsonFormat[Reorder] = new RootJsonFormat[Reorder] {
     override def write(obj: Reorder) =
-      JsObject(
-        "type"      -> "reorder".toJson,
-        "predicted" -> obj.predicted.toJson,
-        "items"     -> obj.items.toJson
-      )
+      JsObject("type" -> "reorder".toJson, "items" -> obj.items.toJson)
 
     override def read(json: JsValue): Reorder = json match {
       case JsObject(fields) =>
-        val predicted = fields
-          .get("predicted")
-          .map(_.convertTo[Boolean])
-
         val items = fields
           .get("items")
           .map(_.convertTo[Seq[Int]])
           .getOrElse(deserializationError(s"Reorder meta json object does not contain `items` field: $json"))
 
-        Reorder(
-          predicted = predicted,
-          items = items
-        )
+        Reorder(items)
 
       case _ => deserializationError(s"Expected JsObject as Reorder meta of medical record, but got $json")
     }
@@ -142,27 +125,16 @@ object record {
 
   implicit val rotateMetaFormat: RootJsonFormat[Rotation] = new RootJsonFormat[Rotation] {
     override def write(obj: Rotation) =
-      JsObject(
-        "type"      -> "rotation".toJson,
-        "predicted" -> obj.predicted.toJson,
-        "items"     -> obj.items.toJson
-      )
+      JsObject("type" -> "rotation".toJson, "items" -> obj.items.toJson)
 
     override def read(json: JsValue): Rotation = json match {
       case JsObject(fields) =>
-        val predicted = fields
-          .get("predicted")
-          .map(_.convertTo[Boolean])
-
         val items = fields
           .get("items")
           .map(_.convertTo[Map[String, Int]])
           .getOrElse(deserializationError(s"Rotation meta json object does not contain `items` field: $json"))
 
-        Rotation(
-          predicted = predicted,
-          items = items
-        )
+        Rotation(items = items)
 
       case _ => deserializationError(s"Expected JsObject as Rotation meta of medical record, but got $json")
     }
@@ -233,8 +205,6 @@ object record {
             caseId = None,
             physician = None,
             meta = None,
-            predictedMeta = None,
-            predictedDocuments = None,
             lastUpdate = LocalDateTime.now()
           )
 
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala
index aeec90f..b25ed1d 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala
@@ -9,8 +9,8 @@ import xyz.driver.pdsuidomain.entities._
 
 object trial {
   import DefaultJsonProtocol._
-  import common._
   import Trial._
+  import common._
 
   implicit val trialStatusFormat = new EnumJsonFormat[Status](
     "New"            -> Status.New,
@@ -24,12 +24,6 @@ object trial {
     "Archived"       -> Status.Archived
   )
 
-  implicit val conditionFormat = new EnumJsonFormat[Condition](
-    "Breast"   -> Condition.Breast,
-    "Lung"     -> Condition.Lung,
-    "Prostate" -> Condition.Prostate
-  )
-
   implicit val trialWriter: RootJsonWriter[Trial] = new RootJsonWriter[Trial] {
     override def write(obj: Trial) =
       JsObject(