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authorvlad <vlad@driver.xyz>2017-06-30 12:29:54 -0700
committervlad <vlad@driver.xyz>2017-06-30 12:29:54 -0700
commita997aa6539d1f0af4ab4fc395ff2033335da312a (patch)
tree4f24529cd0beed94368caafdc0bdbb5677184851 /src/main/scala/xyz/driver/pdsuidomain/formats/json
parent5832f63b84d7388441d1200f2442dc1e9de0225c (diff)
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Latest PDS UI utils
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuidomain/formats/json')
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/arm/ApiArm.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/category/ApiCategory.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiCriterion.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiNewCriterion.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiUpdateCriterion.scala16
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocument.scala8
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocumentType.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiProviderType.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/document/DocumentUtils.scala16
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiExtractedData.scala17
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiPartialExtractedData.scala4
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/hypothesis/ApiHypothesis.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiIntervention.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiInterventionType.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiPartialIntervention.scala6
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/keyword/ApiKeyword.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala14
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala14
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiLabel.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiMessage.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiPartialMessage.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/PatientStatus.scala16
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala15
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/hypothesis/ApiPatientHypothesis.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala36
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala14
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala41
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala18
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala5
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala8
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiUpdateRecord.scala31
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/record/MedicalRecordStatus.scala40
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/studydesign/ApiStudyDesign.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiPartialTrial.scala4
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/TrialStatus.scala32
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiPartialUser.scala32
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiUser.scala14
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/user/UserRole.scala40
40 files changed, 269 insertions, 206 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/arm/ApiArm.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/arm/ApiArm.scala
index 509ea35..2185e3a 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/arm/ApiArm.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/arm/ApiArm.scala
@@ -12,7 +12,7 @@ object ApiArm {
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String] and
(JsPath \ "trialId").format[String]
- ) (ApiArm.apply, unlift(ApiArm.unapply))
+ )(ApiArm.apply, unlift(ApiArm.unapply))
def fromDomain(arm: Arm): ApiArm = ApiArm(
id = arm.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/category/ApiCategory.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/category/ApiCategory.scala
index fabdaa2..f1e15f3 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/category/ApiCategory.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/category/ApiCategory.scala
@@ -13,7 +13,7 @@ object ApiCategory {
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String] and
(JsPath \ "labels").format[List[ApiLabel]]
- ) (ApiCategory.apply, unlift(ApiCategory.unapply))
+ )(ApiCategory.apply, unlift(ApiCategory.unapply))
def fromDomain(categoryWithLabels: CategoryWithLabels) = ApiCategory(
id = categoryWithLabels.category.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiCriterion.scala
index 0f3b76e..1e7114a 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiCriterion.scala
@@ -26,7 +26,7 @@ object ApiCriterion {
(JsPath \ "isCompound").format[Boolean] and
(JsPath \ "labels").format(seqJsonFormat[ApiCriterionLabel]) and
(JsPath \ "trialId").format[String]
- ) (ApiCriterion.apply, unlift(ApiCriterion.unapply))
+ )(ApiCriterion.apply, unlift(ApiCriterion.unapply))
def fromDomain(richCriterion: RichCriterion) = ApiCriterion(
id = richCriterion.criterion.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiNewCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiNewCriterion.scala
index 85c91d5..604a98b 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiNewCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiNewCriterion.scala
@@ -37,5 +37,5 @@ object ApiNewCriterion {
(JsPath \ "text").formatNullable[String] and
(JsPath \ "labels").format(seqJsonFormat[ApiCriterionLabel]) and
(JsPath \ "trialId").format[String]
- ) (ApiNewCriterion.apply, unlift(ApiNewCriterion.unapply))
+ )(ApiNewCriterion.apply, unlift(ApiNewCriterion.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiUpdateCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiUpdateCriterion.scala
index c73c3ef..2bcda56 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiUpdateCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/criterion/ApiUpdateCriterion.scala
@@ -34,15 +34,19 @@ final case class ApiUpdateCriterion(meta: Tristate[String],
object ApiUpdateCriterion {
private val reads: Reads[ApiUpdateCriterion] = (
- (JsPath \ "meta").readTristate(Reads { x => JsSuccess(Json.stringify(x)) }).map {
- case Tristate.Present("{}") => Tristate.Absent
- case x => x
- } and
+ (JsPath \ "meta")
+ .readTristate(Reads { x =>
+ JsSuccess(Json.stringify(x))
+ })
+ .map {
+ case Tristate.Present("{}") => Tristate.Absent
+ case x => x
+ } and
(JsPath \ "arms").readTristate(seqJsonFormat[Long]) and
(JsPath \ "text").readNullable[String] and
(JsPath \ "isCompound").readNullable[Boolean] and
(JsPath \ "labels").readTristate(seqJsonFormat[ApiCriterionLabel])
- ) (ApiUpdateCriterion.apply _)
+ )(ApiUpdateCriterion.apply _)
private val writes: Writes[ApiUpdateCriterion] = (
(JsPath \ "meta").writeTristate(Writes[String](Json.parse)) and
@@ -50,7 +54,7 @@ object ApiUpdateCriterion {
(JsPath \ "text").writeNullable[String] and
(JsPath \ "isCompound").writeNullable[Boolean] and
(JsPath \ "labels").writeTristate(seqJsonFormat[ApiCriterionLabel])
- ) (unlift(ApiUpdateCriterion.unapply))
+ )(unlift(ApiUpdateCriterion.unapply))
implicit val format: Format[ApiUpdateCriterion] = Format(reads, writes)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocument.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocument.scala
index be9c65b..0fd96b3 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocument.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocument.scala
@@ -28,7 +28,7 @@ object ApiDocument {
private val statusFormat = Format(
Reads.StringReads.filter(ValidationError("unknown status")) {
case x if DocumentUtils.statusFromString.isDefinedAt(x) => true
- case _ => false
+ case _ => false
},
Writes.StringWrites
)
@@ -47,8 +47,10 @@ object ApiDocument {
(JsPath \ "previousStatus").formatNullable(statusFormat) and
(JsPath \ "assignee").formatNullable[Long] and
(JsPath \ "previousAssignee").formatNullable[Long] and
- (JsPath \ "meta").formatNullable(Format(Reads { x => JsSuccess(Json.stringify(x)) }, Writes[String](Json.parse)))
- ) (ApiDocument.apply, unlift(ApiDocument.unapply))
+ (JsPath \ "meta").formatNullable(Format(Reads { x =>
+ JsSuccess(Json.stringify(x))
+ }, Writes[String](Json.parse)))
+ )(ApiDocument.apply, unlift(ApiDocument.unapply))
def fromDomain(document: Document): ApiDocument = {
ApiDocument(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocumentType.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocumentType.scala
index e00da20..8b11b91 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocumentType.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiDocumentType.scala
@@ -11,7 +11,7 @@ object ApiDocumentType {
implicit val format: Format[ApiDocumentType] = (
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String]
- ) (ApiDocumentType.apply, unlift(ApiDocumentType.unapply))
+ )(ApiDocumentType.apply, unlift(ApiDocumentType.unapply))
def fromDomain(documentType: DocumentType) = ApiDocumentType(
id = documentType.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiProviderType.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiProviderType.scala
index 7b370ba..eb0ac46 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiProviderType.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/ApiProviderType.scala
@@ -11,7 +11,7 @@ object ApiProviderType {
implicit val format: Format[ApiProviderType] = (
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String]
- ) (ApiProviderType.apply, unlift(ApiProviderType.unapply))
+ )(ApiProviderType.apply, unlift(ApiProviderType.unapply))
def fromDomain(providerType: ProviderType) = ApiProviderType(
id = providerType.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/DocumentUtils.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/DocumentUtils.scala
index 87e449f..24e388e 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/DocumentUtils.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/document/DocumentUtils.scala
@@ -5,20 +5,20 @@ import xyz.driver.pdsuidomain.entities.Document.Status
object DocumentUtils {
val statusFromString: PartialFunction[String, Status] = {
- case "New" => Status.New
+ case "New" => Status.New
case "Organized" => Status.Organized
case "Extracted" => Status.Extracted
- case "Done" => Status.Done
- case "Flagged" => Status.Flagged
- case "Archived" => Status.Archived
+ case "Done" => Status.Done
+ case "Flagged" => Status.Flagged
+ case "Archived" => Status.Archived
}
def statusToString(x: Status): String = x match {
- case Status.New => "New"
+ case Status.New => "New"
case Status.Organized => "Organized"
case Status.Extracted => "Extracted"
- case Status.Done => "Done"
- case Status.Flagged => "Flagged"
- case Status.Archived => "Archived"
+ case Status.Done => "Done"
+ case Status.Flagged => "Flagged"
+ case Status.Archived => "Archived"
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiExtractedData.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiExtractedData.scala
index dad7a1e..ec4185f 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiExtractedData.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiExtractedData.scala
@@ -26,12 +26,17 @@ object ApiExtractedData {
(JsPath \ "keywordId").formatNullable[Long] and
(JsPath \ "evidence").formatNullable[String] and
(JsPath \ "meta").formatNullable[String] and
- (JsPath \ "labels").formatNullable[List[ApiExtractedDataLabel]](Format(
- Reads.of[List[ApiExtractedDataLabel]].filter(ValidationError("empty labels"))({
- case x if x.nonEmpty => true
- case _ => false
- }), Writes.of[List[ApiExtractedDataLabel]]))
- ) (ApiExtractedData.apply, unlift(ApiExtractedData.unapply))
+ (JsPath \ "labels").formatNullable[List[ApiExtractedDataLabel]](
+ Format(
+ Reads
+ .of[List[ApiExtractedDataLabel]]
+ .filter(ValidationError("empty labels"))({
+ case x if x.nonEmpty => true
+ case _ => false
+ }),
+ Writes.of[List[ApiExtractedDataLabel]]
+ ))
+ )(ApiExtractedData.apply, unlift(ApiExtractedData.unapply))
def fromDomain(extractedDataWithLabels: RichExtractedData) = ApiExtractedData(
id = extractedDataWithLabels.extractedData.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiPartialExtractedData.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiPartialExtractedData.scala
index 69b5627..cfd55fd 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiPartialExtractedData.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/extracteddata/ApiPartialExtractedData.scala
@@ -66,7 +66,7 @@ object ApiPartialExtractedData {
(JsPath \ "evidence").readTristate[String] and
(JsPath \ "meta").readTristate[String] and
(JsPath \ "labels").readTristate[List[ApiExtractedDataLabel]]
- ) (ApiPartialExtractedData.apply _)
+ )(ApiPartialExtractedData.apply _)
private val writes: Writes[ApiPartialExtractedData] = (
(JsPath \ "documentId").writeNullable[Long] and
@@ -74,7 +74,7 @@ object ApiPartialExtractedData {
(JsPath \ "evidence").writeTristate[String] and
(JsPath \ "meta").writeTristate[String] and
(JsPath \ "labels").writeTristate[List[ApiExtractedDataLabel]]
- ) (unlift(ApiPartialExtractedData.unapply))
+ )(unlift(ApiPartialExtractedData.unapply))
implicit val format: Format[ApiPartialExtractedData] = Format(reads, writes)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/hypothesis/ApiHypothesis.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/hypothesis/ApiHypothesis.scala
index 0d6763c..7446ec3 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/hypothesis/ApiHypothesis.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/hypothesis/ApiHypothesis.scala
@@ -15,7 +15,7 @@ object ApiHypothesis {
(JsPath \ "name").format[String] and
(JsPath \ "treatmentType").format[String] and
(JsPath \ "description").format[String]
- ) (ApiHypothesis.apply, unlift(ApiHypothesis.unapply))
+ )(ApiHypothesis.apply, unlift(ApiHypothesis.unapply))
def fromDomain(hypothesis: Hypothesis) = ApiHypothesis(
id = hypothesis.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiIntervention.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiIntervention.scala
index 37a9758..39e0000 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiIntervention.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiIntervention.scala
@@ -22,7 +22,7 @@ object ApiIntervention {
(JsPath \ "isActive").format[Boolean] and
(JsPath \ "arms").format[List[Long]] and
(JsPath \ "trialId").format[String]
- ) (ApiIntervention.apply, unlift(ApiIntervention.unapply))
+ )(ApiIntervention.apply, unlift(ApiIntervention.unapply))
def fromDomain(interventionWithArms: InterventionWithArms): ApiIntervention = {
import interventionWithArms.intervention
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiInterventionType.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiInterventionType.scala
index ca444eb..54d2cb7 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiInterventionType.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiInterventionType.scala
@@ -11,7 +11,7 @@ object ApiInterventionType {
implicit val format: Format[ApiInterventionType] = (
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String]
- ) (ApiInterventionType.apply, unlift(ApiInterventionType.unapply))
+ )(ApiInterventionType.apply, unlift(ApiInterventionType.unapply))
def fromDomain(interventionType: InterventionType) = ApiInterventionType(
id = interventionType.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiPartialIntervention.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiPartialIntervention.scala
index 416237a..f67ba6b 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiPartialIntervention.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/intervention/ApiPartialIntervention.scala
@@ -12,7 +12,7 @@ final case class ApiPartialIntervention(typeId: Option[Long],
def applyTo(orig: InterventionWithArms): InterventionWithArms = {
val origIntervention = orig.intervention
- val draftArmList = arms.map(_.map(x => InterventionArm(LongId(x), orig.intervention.id)))
+ val draftArmList = arms.map(_.map(x => InterventionArm(LongId(x), orig.intervention.id)))
orig.copy(
intervention = origIntervention.copy(
typeId = typeId.map(LongId(_)).orElse(origIntervention.typeId),
@@ -31,14 +31,14 @@ object ApiPartialIntervention {
(JsPath \ "description").readNullable[String] and
(JsPath \ "isActive").readNullable[Boolean] and
(JsPath \ "arms").readNullable[List[Long]]
- ) (ApiPartialIntervention.apply _)
+ )(ApiPartialIntervention.apply _)
private val writes: Writes[ApiPartialIntervention] = (
(JsPath \ "typeId").writeNullable[Long] and
(JsPath \ "description").writeNullable[String] and
(JsPath \ "isActive").writeNullable[Boolean] and
(JsPath \ "arms").writeNullable[List[Long]]
- ) (unlift(ApiPartialIntervention.unapply))
+ )(unlift(ApiPartialIntervention.unapply))
implicit val format: Format[ApiPartialIntervention] = Format(reads, writes)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/keyword/ApiKeyword.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/keyword/ApiKeyword.scala
index afd012d..a9d02fc 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/keyword/ApiKeyword.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/keyword/ApiKeyword.scala
@@ -13,7 +13,7 @@ object ApiKeyword {
(JsPath \ "id").format[Long] and
(JsPath \ "keyword").format[String] and
(JsPath \ "labels").format[List[ApiLabel]]
- ) (ApiKeyword.apply, unlift(ApiKeyword.unapply))
+ )(ApiKeyword.apply, unlift(ApiKeyword.unapply))
def fromDomain(keywordWithLabels: KeywordWithLabels) = ApiKeyword(
id = keywordWithLabels.keyword.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala
index 2788bf2..7a65af8 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala
@@ -21,7 +21,7 @@ final case class ApiCriterionLabel(labelId: Option[Long],
categoryId = categoryId.map(LongId[Category]),
value = value.map {
case "Yes" => true
- case "No" => false
+ case "No" => false
},
isDefining = isDefining
)
@@ -41,9 +41,13 @@ object ApiCriterionLabel {
implicit val format: Format[ApiCriterionLabel] = (
(JsPath \ "labelId").formatNullable[Long] and
(JsPath \ "categoryId").formatNullable[Long] and
- (JsPath \ "value").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown value"))({ x =>
- x == "Yes" || x == "No"
- }), Writes.of[String])) and
+ (JsPath \ "value").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown value"))({ x =>
+ x == "Yes" || x == "No"
+ }),
+ Writes.of[String])) and
(JsPath \ "isDefining").format[Boolean]
- ) (ApiCriterionLabel.apply, unlift(ApiCriterionLabel.unapply))
+ )(ApiCriterionLabel.apply, unlift(ApiCriterionLabel.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala
index 9159d27..cb45025 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala
@@ -22,11 +22,15 @@ object ApiExtractedDataLabel {
implicit val format: Format[ApiExtractedDataLabel] = (
(JsPath \ "id").formatNullable[Long] and
(JsPath \ "categoryId").formatNullable[Long] and
- (JsPath \ "value").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String]))
- ) (ApiExtractedDataLabel.apply, unlift(ApiExtractedDataLabel.unapply))
+ (JsPath \ "value").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown value"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]))
+ )(ApiExtractedDataLabel.apply, unlift(ApiExtractedDataLabel.unapply))
def fromDomain(dataLabel: ExtractedDataLabel) = ApiExtractedDataLabel(
id = dataLabel.labelId.map(_.id),
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiLabel.scala
index 8c30f3a..042b380 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiLabel.scala
@@ -12,7 +12,7 @@ object ApiLabel {
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String] and
(JsPath \ "categoryId").format[Long]
- ) (ApiLabel.apply, unlift(ApiLabel.unapply))
+ )(ApiLabel.apply, unlift(ApiLabel.unapply))
def fromDomain(x: Label) = ApiLabel(
id = x.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiMessage.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiMessage.scala
index 20b2607..05f9564 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiMessage.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiMessage.scala
@@ -55,5 +55,5 @@ object ApiMessage {
(JsPath \ "evidence").formatNullable[String] and
(JsPath \ "archiveRequired").formatNullable[Boolean] and
(JsPath \ "meta").formatNullable[String]
- ) (ApiMessage.apply, unlift(ApiMessage.unapply))
+ )(ApiMessage.apply, unlift(ApiMessage.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiPartialMessage.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiPartialMessage.scala
index 151234c..8c390e7 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiPartialMessage.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/message/ApiPartialMessage.scala
@@ -66,7 +66,7 @@ object ApiPartialMessage {
(JsPath \ "evidence").formatNullable[String] and
(JsPath \ "archiveRequired").formatNullable[Boolean] and
(JsPath \ "meta").formatNullable[String]
- ) (ApiPartialMessage.apply, unlift(ApiPartialMessage.unapply))
+ )(ApiPartialMessage.apply, unlift(ApiPartialMessage.unapply))
def fromDomain(domain: Message) = ApiPartialMessage(
text = Some(domain.text),
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala
index 0a3938c..caa556b 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala
@@ -28,7 +28,7 @@ object ApiPatient {
(JsPath \ "previousAssignee").formatNullable[Long] and
(JsPath \ "lastUpdate").format[ZonedDateTime] and
(JsPath \ "condition").format[String]
- ) (ApiPatient.apply, unlift(ApiPatient.unapply))
+ )(ApiPatient.apply, unlift(ApiPatient.unapply))
def fromDomain(patient: Patient) = ApiPatient(
id = patient.id.toString,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/PatientStatus.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/PatientStatus.scala
index d906fc6..a23a1de 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/PatientStatus.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/PatientStatus.scala
@@ -5,20 +5,20 @@ import xyz.driver.pdsuidomain.entities.Patient.Status
object PatientStatus {
val statusFromString: PartialFunction[String, Status] = {
- case "New" => Status.New
+ case "New" => Status.New
case "Verified" => Status.Verified
case "Reviewed" => Status.Reviewed
- case "Curated" => Status.Curated
- case "Flagged" => Status.Flagged
- case "Done" => Status.Done
+ case "Curated" => Status.Curated
+ case "Flagged" => Status.Flagged
+ case "Done" => Status.Done
}
def statusToString(x: Status): String = x match {
- case Status.New => "New"
+ case Status.New => "New"
case Status.Verified => "Verified"
case Status.Reviewed => "Reviewed"
- case Status.Curated => "Curated"
- case Status.Flagged => "Flagged"
- case Status.Done => "Done"
+ case Status.Curated => "Curated"
+ case Status.Flagged => "Flagged"
+ case Status.Done => "Done"
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala
index c1a6e76..42c3259 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala
@@ -26,12 +26,17 @@ object ApiPatientEligibleTrial {
(JsPath \ "trialTitle").format[String] and
(JsPath \ "arms").format[List[String]] and
(JsPath \ "hypothesisId").format[UUID] and
- (JsPath \ "eligibilityStatus").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
+ (JsPath \ "eligibilityStatus").formatNullable[String](Format(
+ Reads
+ .of[String]
+ .filter(ValidationError("unknown eligibility status"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]
+ )) and
(JsPath \ "isVerified").format[Boolean]
- ) (ApiPatientEligibleTrial.apply, unlift(ApiPatientEligibleTrial.unapply))
+ )(ApiPatientEligibleTrial.apply, unlift(ApiPatientEligibleTrial.unapply))
def fromDomain(eligibleTrialWithTrial: RichPatientEligibleTrial) = ApiPatientEligibleTrial(
id = eligibleTrialWithTrial.group.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/hypothesis/ApiPatientHypothesis.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/hypothesis/ApiPatientHypothesis.scala
index 1b0767d..374370e 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/hypothesis/ApiPatientHypothesis.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/hypothesis/ApiPatientHypothesis.scala
@@ -20,7 +20,7 @@ object ApiPatientHypothesis {
(JsPath \ "hypothesisId").format[UUID] and
(JsPath \ "matchedTrials").format[Long] and
(JsPath \ "rationale").formatNullable[String]
- ) (ApiPatientHypothesis.apply, unlift(ApiPatientHypothesis.unapply))
+ )(ApiPatientHypothesis.apply, unlift(ApiPatientHypothesis.unapply))
def fromDomain(patientHypothesis: PatientHypothesis) = ApiPatientHypothesis(
id = patientHypothesis.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala
index 82e3a3f..40f7de4 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala
@@ -8,13 +8,13 @@ import play.api.libs.functional.syntax._
import play.api.libs.json._
import xyz.driver.pdsuicommon.domain.FuzzyValue
-final case class ApiPartialPatientLabel(primaryValue: Option[String],
- verifiedPrimaryValue: Tristate[String]) {
+final case class ApiPartialPatientLabel(primaryValue: Option[String], verifiedPrimaryValue: Tristate[String]) {
def applyTo(orig: PatientLabel): PatientLabel = {
orig.copy(
primaryValue = primaryValue.map(FuzzyValue.fromString).orElse(orig.primaryValue),
- verifiedPrimaryValue = verifiedPrimaryValue.cata(x => Some(FuzzyValue.fromString(x)), None, orig.verifiedPrimaryValue)
+ verifiedPrimaryValue =
+ verifiedPrimaryValue.cata(x => Some(FuzzyValue.fromString(x)), None, orig.verifiedPrimaryValue)
)
}
@@ -23,16 +23,24 @@ final case class ApiPartialPatientLabel(primaryValue: Option[String],
object ApiPartialPatientLabel {
implicit val format: Format[ApiPartialPatientLabel] = (
- (JsPath \ "primaryValue").formatNullable[String](Format(
- Reads.of[String].filter(ValidationError("unknown primary value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
- (JsPath \ "verifiedPrimaryValue").formatTristate[String](Format(
- Reads.of[String].filter(ValidationError("unknown verified primary value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String]))
- ) (ApiPartialPatientLabel.apply, unlift(ApiPartialPatientLabel.unapply))
+ (JsPath \ "primaryValue").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown primary value"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String])) and
+ (JsPath \ "verifiedPrimaryValue").formatTristate[String](
+ Format(
+ Reads
+ .of[String]
+ .filter(ValidationError("unknown verified primary value"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]
+ ))
+ )(ApiPartialPatientLabel.apply, unlift(ApiPartialPatientLabel.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala
index 3fe135e..ae64c33 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala
@@ -12,11 +12,15 @@ object ApiPatientLabelDefiningCriteria {
implicit val format: Format[ApiPatientLabelDefiningCriteria] = (
(JsPath \ "labelId").format[Long] and
- (JsPath \ "value").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String]))
- ) (ApiPatientLabelDefiningCriteria.apply, unlift(ApiPatientLabelDefiningCriteria.unapply))
+ (JsPath \ "value").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown value"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]))
+ )(ApiPatientLabelDefiningCriteria.apply, unlift(ApiPatientLabelDefiningCriteria.unapply))
def fromDomain(x: PatientLabel) = ApiPatientLabelDefiningCriteria(
labelId = x.labelId.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala
index b68dad5..399bc7d 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala
@@ -9,16 +9,13 @@ import play.api.libs.json.{Format, JsPath, Reads, Writes}
import xyz.driver.pdsuicommon.domain.FuzzyValue
final case class ApiPartialPatientCriterion(eligibilityStatus: Option[String],
- verifiedEligibilityStatus: Tristate[String]) {
+ verifiedEligibilityStatus: Tristate[String]) {
def applyTo(orig: PatientCriterion): PatientCriterion = {
orig.copy(
eligibilityStatus = eligibilityStatus.map(FuzzyValue.fromString).orElse(orig.eligibilityStatus),
- verifiedEligibilityStatus = verifiedEligibilityStatus.cata(x =>
- Some(FuzzyValue.fromString(x)),
- None,
- orig.verifiedEligibilityStatus
- )
+ verifiedEligibilityStatus =
+ verifiedEligibilityStatus.cata(x => Some(FuzzyValue.fromString(x)), None, orig.verifiedEligibilityStatus)
)
}
}
@@ -26,15 +23,25 @@ final case class ApiPartialPatientCriterion(eligibilityStatus: Option[String],
object ApiPartialPatientCriterion {
implicit val format: Format[ApiPartialPatientCriterion] = (
- (JsPath \ "eligibilityStatus").formatNullable[String](Format(
- Reads.of[String].filter(ValidationError("unknown eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
- (JsPath \ "verifiedEligibilityStatus").formatTristate[String](Format(
- Reads.of[String].filter(ValidationError("unknown verified eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String]))
- ) (ApiPartialPatientCriterion.apply, unlift(ApiPartialPatientCriterion.unapply))
+ (JsPath \ "eligibilityStatus").formatNullable[String](
+ Format(
+ Reads
+ .of[String]
+ .filter(ValidationError("unknown eligibility status"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]
+ )) and
+ (JsPath \ "verifiedEligibilityStatus").formatTristate[String](
+ Format(
+ Reads
+ .of[String]
+ .filter(ValidationError("unknown verified eligibility status"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]
+ ))
+ )(ApiPartialPatientCriterion.apply, unlift(ApiPartialPatientCriterion.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala
index 71cb58f..4b08970 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala
@@ -8,8 +8,8 @@ import play.api.libs.json.{Format, JsPath, Reads, Writes}
import xyz.driver.pdsuidomain.services.PatientCriterionService.DraftPatientCriterion
final case class ApiPartialPatientCriterionList(id: Long,
- eligibilityStatus: Option[String],
- isVerified: Option[Boolean]) {
+ eligibilityStatus: Option[String],
+ isVerified: Option[Boolean]) {
def toDomain: DraftPatientCriterion = DraftPatientCriterion(
id = LongId[PatientCriterion](id),
@@ -23,10 +23,14 @@ object ApiPartialPatientCriterionList {
implicit val format: Format[ApiPartialPatientCriterionList] = (
(JsPath \ "id").format[Long] and
(JsPath \ "eligibilityStatus").formatNullable[String](Format(
- Reads.of[String].filter(ValidationError("unknown eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
+ Reads
+ .of[String]
+ .filter(ValidationError("unknown eligibility status"))({
+ case x if FuzzyValue.fromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]
+ )) and
(JsPath \ "isVerified").formatNullable[Boolean]
- ) (ApiPartialPatientCriterionList.apply, unlift(ApiPartialPatientCriterionList.unapply))
+ )(ApiPartialPatientCriterionList.apply, unlift(ApiPartialPatientCriterionList.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala
index 57c030b..cee67b2 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala
@@ -7,10 +7,7 @@ import xyz.driver.pdsuicommon.domain._
import xyz.driver.pdsuidomain.entities._
import play.api.libs.json._
-final case class ApiCreateRecord(disease: String,
- patientId: String,
- requestId: UUID,
- filename: String) {
+final case class ApiCreateRecord(disease: String, patientId: String, requestId: UUID, filename: String) {
def toDomain = MedicalRecord(
id = LongId(0),
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala
index 6096006..de54a9e 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala
@@ -24,7 +24,7 @@ object ApiRecord {
private val statusFormat = Format(
Reads.StringReads.filter(ValidationError("unknown status")) {
case x if MedicalRecordStatus.statusFromString.isDefinedAt(x) => true
- case _ => false
+ case _ => false
},
Writes.StringWrites
)
@@ -39,8 +39,10 @@ object ApiRecord {
(JsPath \ "previousStatus").formatNullable(statusFormat) and
(JsPath \ "assignee").formatNullable[Long] and
(JsPath \ "previousAssignee").formatNullable[Long] and
- (JsPath \ "meta").format(Format(Reads { x => JsSuccess(Json.stringify(x)) }, Writes[String](Json.parse)))
- ) (ApiRecord.apply, unlift(ApiRecord.unapply))
+ (JsPath \ "meta").format(Format(Reads { x =>
+ JsSuccess(Json.stringify(x))
+ }, Writes[String](Json.parse)))
+ )(ApiRecord.apply, unlift(ApiRecord.unapply))
def fromDomain(record: MedicalRecord) = ApiRecord(
id = record.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiUpdateRecord.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiUpdateRecord.scala
index b752a4c..0d17b66 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiUpdateRecord.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiUpdateRecord.scala
@@ -10,9 +10,7 @@ import play.api.libs.functional.syntax._
import play.api.libs.json._
import xyz.driver.pdsuicommon.json.JsonSerializer
-final case class ApiUpdateRecord(status: Option[String],
- assignee: Tristate[Long],
- meta: Tristate[String]) {
+final case class ApiUpdateRecord(status: Option[String], assignee: Tristate[Long], meta: Tristate[String]) {
def applyTo(orig: MedicalRecord): MedicalRecord = {
orig.copy(
@@ -26,22 +24,29 @@ final case class ApiUpdateRecord(status: Option[String],
object ApiUpdateRecord {
private val reads: Reads[ApiUpdateRecord] = (
- (JsPath \ "status").readNullable[String](Reads.of[String].filter(ValidationError("unknown status"))({
- case x if MedicalRecordStatus.statusFromString.isDefinedAt(x) => true
- case _ => false
- })) and
+ (JsPath \ "status").readNullable[String](
+ Reads
+ .of[String]
+ .filter(ValidationError("unknown status"))({
+ case x if MedicalRecordStatus.statusFromString.isDefinedAt(x) => true
+ case _ => false
+ })) and
(JsPath \ "assignee").readTristate[Long] and
- (JsPath \ "meta").readTristate(Reads { x => JsSuccess(Json.stringify(x)) }).map {
- case Tristate.Present("{}") => Tristate.Absent
- case x => x
- }
- ) (ApiUpdateRecord.apply _)
+ (JsPath \ "meta")
+ .readTristate(Reads { x =>
+ JsSuccess(Json.stringify(x))
+ })
+ .map {
+ case Tristate.Present("{}") => Tristate.Absent
+ case x => x
+ }
+ )(ApiUpdateRecord.apply _)
private val writes: Writes[ApiUpdateRecord] = (
(JsPath \ "status").writeNullable[String] and
(JsPath \ "assignee").writeTristate[Long] and
(JsPath \ "meta").writeTristate(Writes[String](Json.parse))
- ) (unlift(ApiUpdateRecord.unapply))
+ )(unlift(ApiUpdateRecord.unapply))
implicit val format: Format[ApiUpdateRecord] = Format(reads, writes)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/MedicalRecordStatus.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/MedicalRecordStatus.scala
index bde4af0..a77b76b 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/MedicalRecordStatus.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/MedicalRecordStatus.scala
@@ -5,30 +5,30 @@ import xyz.driver.pdsuidomain.entities.MedicalRecord.Status
object MedicalRecordStatus {
val statusFromString: PartialFunction[String, Status] = {
- case "Unprocessed" => Status.Unprocessed
- case "PreCleaning" => Status.PreCleaning
- case "New" => Status.New
- case "Cleaned" => Status.Cleaned
- case "PreOrganized" => Status.PreOrganized
+ case "Unprocessed" => Status.Unprocessed
+ case "PreCleaning" => Status.PreCleaning
+ case "New" => Status.New
+ case "Cleaned" => Status.Cleaned
+ case "PreOrganized" => Status.PreOrganized
case "PreOrganizing" => Status.PreOrganizing
- case "Reviewed" => Status.Reviewed
- case "Organized" => Status.Organized
- case "Done" => Status.Done
- case "Flagged" => Status.Flagged
- case "Archived" => Status.Archived
+ case "Reviewed" => Status.Reviewed
+ case "Organized" => Status.Organized
+ case "Done" => Status.Done
+ case "Flagged" => Status.Flagged
+ case "Archived" => Status.Archived
}
def statusToString(x: Status): String = x match {
- case Status.Unprocessed => "Unprocessed"
- case Status.PreCleaning => "PreCleaning"
- case Status.New => "New"
- case Status.Cleaned => "Cleaned"
- case Status.PreOrganized => "PreOrganized"
+ case Status.Unprocessed => "Unprocessed"
+ case Status.PreCleaning => "PreCleaning"
+ case Status.New => "New"
+ case Status.Cleaned => "Cleaned"
+ case Status.PreOrganized => "PreOrganized"
case Status.PreOrganizing => "PreOrganizing"
- case Status.Reviewed => "Reviewed"
- case Status.Organized => "Organized"
- case Status.Done => "Done"
- case Status.Flagged => "Flagged"
- case Status.Archived => "Archived"
+ case Status.Reviewed => "Reviewed"
+ case Status.Organized => "Organized"
+ case Status.Done => "Done"
+ case Status.Flagged => "Flagged"
+ case Status.Archived => "Archived"
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/studydesign/ApiStudyDesign.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/studydesign/ApiStudyDesign.scala
index 958ff5d..26c7352 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/studydesign/ApiStudyDesign.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/studydesign/ApiStudyDesign.scala
@@ -11,7 +11,7 @@ object ApiStudyDesign {
implicit val format: Format[ApiStudyDesign] = (
(JsPath \ "id").format[Long] and
(JsPath \ "name").format[String]
- ) (ApiStudyDesign.apply, unlift(ApiStudyDesign.unapply))
+ )(ApiStudyDesign.apply, unlift(ApiStudyDesign.unapply))
def fromDomain(studyDesign: StudyDesign) = ApiStudyDesign(
id = studyDesign.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiPartialTrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiPartialTrial.scala
index 0dc1446..f89f181 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiPartialTrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiPartialTrial.scala
@@ -31,14 +31,14 @@ object ApiPartialTrial {
(JsPath \ "studyDesignId").readTristate[Long] and
(JsPath \ "overview").readTristate[String] and
(JsPath \ "title").readTristate[String]
- ) (ApiPartialTrial.apply _)
+ )(ApiPartialTrial.apply _)
private val writes: Writes[ApiPartialTrial] = (
(JsPath \ "hypothesisId").writeTristate[UUID] and
(JsPath \ "studyDesignId").writeTristate[Long] and
(JsPath \ "overview").writeTristate[String] and
(JsPath \ "title").writeTristate[String]
- ) (unlift(ApiPartialTrial.unapply))
+ )(unlift(ApiPartialTrial.unapply))
implicit val format: Format[ApiPartialTrial] = Format(reads, writes)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala
index 3267617..db980ee 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala
@@ -41,7 +41,7 @@ object ApiTrial {
(JsPath \ "overviewTemplate").format[String] and
(JsPath \ "isUpdated").format[Boolean] and
(JsPath \ "title").format[String]
- ) (ApiTrial.apply, unlift(ApiTrial.unapply))
+ )(ApiTrial.apply, unlift(ApiTrial.unapply))
def fromDomain(trial: Trial): ApiTrial = ApiTrial(
id = trial.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/TrialStatus.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/TrialStatus.scala
index 49bcbcb..a5b557b 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/TrialStatus.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/TrialStatus.scala
@@ -5,26 +5,26 @@ import xyz.driver.pdsuidomain.entities.Trial.Status
object TrialStatus {
val statusFromString: PartialFunction[String, Status] = {
- case "New" => Status.New
- case "ReviewSummary" => Status.ReviewSummary
- case "Summarized" => Status.Summarized
- case "PendingUpdate" => Status.PendingUpdate
- case "Update" => Status.Update
+ case "New" => Status.New
+ case "ReviewSummary" => Status.ReviewSummary
+ case "Summarized" => Status.Summarized
+ case "PendingUpdate" => Status.PendingUpdate
+ case "Update" => Status.Update
case "ReviewCriteria" => Status.ReviewCriteria
- case "Done" => Status.Done
- case "Flagged" => Status.Flagged
- case "Archived" => Status.Archived
+ case "Done" => Status.Done
+ case "Flagged" => Status.Flagged
+ case "Archived" => Status.Archived
}
def statusToString(x: Status): String = x match {
- case Status.New => "New"
- case Status.ReviewSummary => "ReviewSummary"
- case Status.Summarized => "Summarized"
- case Status.PendingUpdate => "PendingUpdate"
- case Status.Update => "Update"
+ case Status.New => "New"
+ case Status.ReviewSummary => "ReviewSummary"
+ case Status.Summarized => "Summarized"
+ case Status.PendingUpdate => "PendingUpdate"
+ case Status.Update => "Update"
case Status.ReviewCriteria => "ReviewCriteria"
- case Status.Done => "Done"
- case Status.Flagged => "Flagged"
- case Status.Archived => "Archived"
+ case Status.Done => "Done"
+ case Status.Flagged => "Flagged"
+ case Status.Archived => "Archived"
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiPartialUser.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiPartialUser.scala
index 977934b..654508c 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiPartialUser.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiPartialUser.scala
@@ -14,9 +14,7 @@ import ApiPartialUser._
import xyz.driver.pdsuicommon.json.JsonValidationException
import xyz.driver.pdsuicommon.validation.{AdditionalConstraints, JsonValidationErrors}
-final case class ApiPartialUser(email: Option[String],
- name: Option[String],
- roleId: Option[String]) {
+final case class ApiPartialUser(email: Option[String], name: Option[String], roleId: Option[String]) {
def applyTo(orig: User): Try[User] = Try {
val validation = Map(
@@ -36,8 +34,8 @@ final case class ApiPartialUser(email: Option[String],
def toDomain(id: LongId[User] = LongId(0L)): Try[User] = Try {
val validation = Map(
- JsPath \ "email" -> AdditionalConstraints.optionNonEmptyConstraint(email),
- JsPath \ "name" -> AdditionalConstraints.optionNonEmptyConstraint(name),
+ JsPath \ "email" -> AdditionalConstraints.optionNonEmptyConstraint(email),
+ JsPath \ "name" -> AdditionalConstraints.optionNonEmptyConstraint(name),
JsPath \ "roleId" -> AdditionalConstraints.optionNonEmptyConstraint(roleId)
)
@@ -71,13 +69,19 @@ object ApiPartialUser {
implicit val format: Format[ApiPartialUser] = (
(JsPath \ "email").formatNullable[String](Format(Reads.email, Writes.StringWrites)) and
- (JsPath \ "name").formatNullable[String](Format(
- Reads.filterNot[String](ValidationError("Username is too long (max length is 255 chars)", 255))(_.length > 255),
- Writes.StringWrites
- )) and
- (JsPath \ "roleId").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown role"))({
- case x if UserRole.roleFromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String]))
- ) (ApiPartialUser.apply, unlift(ApiPartialUser.unapply))
+ (JsPath \ "name").formatNullable[String](
+ Format(
+ Reads.filterNot[String](ValidationError("Username is too long (max length is 255 chars)", 255))(
+ _.length > 255),
+ Writes.StringWrites
+ )) and
+ (JsPath \ "roleId").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown role"))({
+ case x if UserRole.roleFromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String]))
+ )(ApiPartialUser.apply, unlift(ApiPartialUser.unapply))
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiUser.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiUser.scala
index c2653ec..29138ed 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiUser.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/ApiUser.scala
@@ -15,12 +15,16 @@ object ApiUser {
(JsPath \ "id").format[Long] and
(JsPath \ "email").format[String](Reads.email) and
(JsPath \ "name").format[String] and
- (JsPath \ "roleId").format[String](Format(Reads.of[String].filter(ValidationError("unknown role"))({
- case x if UserRole.roleFromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
+ (JsPath \ "roleId").format[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown role"))({
+ case x if UserRole.roleFromString.isDefinedAt(x) => true
+ case _ => false
+ }),
+ Writes.of[String])) and
(JsPath \ "latestActivity").formatNullable[ZonedDateTime]
- ) (ApiUser.apply, unlift(ApiUser.unapply))
+ )(ApiUser.apply, unlift(ApiUser.unapply))
def fromDomain(user: User) = ApiUser(
user.id.id,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/UserRole.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/UserRole.scala
index 74acb81..412a969 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/UserRole.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/user/UserRole.scala
@@ -5,29 +5,33 @@ import xyz.driver.pdsuicommon.domain.User.Role
object UserRole {
val roleFromString: PartialFunction[String, Role] = {
- case "Cleaner" => Role.RecordCleaner
- case "Organizer" => Role.RecordOrganizer
- case "Extractor" => Role.DocumentExtractor
- case "RecordAdmin" => Role.RecordAdmin
- case "TrialSummarizer" => Role.TrialSummarizer
- case "CriteriaCurator" => Role.CriteriaCurator
- case "TrialAdmin" => Role.TrialAdmin
- case "EligibilityVerifier" => Role.EligibilityVerifier
+ case "Cleaner" => Role.RecordCleaner
+ case "Organizer" => Role.RecordOrganizer
+ case "Extractor" => Role.DocumentExtractor
+ case "RecordAdmin" => Role.RecordAdmin
+ case "TrialSummarizer" => Role.TrialSummarizer
+ case "CriteriaCurator" => Role.CriteriaCurator
+ case "TrialAdmin" => Role.TrialAdmin
+ case "EligibilityVerifier" => Role.EligibilityVerifier
case "TreatmentMatchingAdmin" => Role.TreatmentMatchingAdmin
- case "RoutesCurator" => Role.RoutesCurator
+ case "RoutesCurator" => Role.RoutesCurator
+ case "SystemUser" => Role.SystemUser
+ case "ResearchOncologist" => Role.ResearchOncologist
// No Mixed at this time
}
def roleToString(x: Role): String = x match {
- case Role.RecordCleaner => "Cleaner"
- case Role.RecordOrganizer => "Organizer"
- case Role.DocumentExtractor => "Extractor"
- case Role.RecordAdmin => "RecordAdmin"
- case Role.TrialSummarizer => "TrialSummarizer"
- case Role.CriteriaCurator => "CriteriaCurator"
- case Role.TrialAdmin => "TrialAdmin"
- case Role.EligibilityVerifier => "EligibilityVerifier"
+ case Role.RecordCleaner => "Cleaner"
+ case Role.RecordOrganizer => "Organizer"
+ case Role.DocumentExtractor => "Extractor"
+ case Role.RecordAdmin => "RecordAdmin"
+ case Role.TrialSummarizer => "TrialSummarizer"
+ case Role.CriteriaCurator => "CriteriaCurator"
+ case Role.TrialAdmin => "TrialAdmin"
+ case Role.EligibilityVerifier => "EligibilityVerifier"
case Role.TreatmentMatchingAdmin => "TreatmentMatchingAdmin"
- case Role.RoutesCurator => "RoutesCurator"
+ case Role.RoutesCurator => "RoutesCurator"
+ case Role.SystemUser => "SystemUser"
+ case Role.ResearchOncologist => "ResearchOncologist"
}
}