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authorMarvin Bertin <marvin.bertin@gmail.com>2017-10-10 11:54:20 -0700
committerMarvin Bertin <marvin.bertin@gmail.com>2017-10-10 11:54:20 -0700
commit19a70318ecee81872fffe23c03d83e725610911d (patch)
tree984510310c95856fcdcb463d9a242f9773795266 /src/main/scala/xyz/driver/pdsuidomain/formats/json
parent05aa114cfd22228f0457b6457ce441af5eabfc60 (diff)
parent4f83461cba1f78e607ca2a4edb6fa26f6e16e732 (diff)
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fix merge conflicts with master
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuidomain/formats/json')
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityArm.scala23
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityCreateArm.scala19
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiPartialEligibilityArm.scala7
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/evidence/ApiPatientLabelEvidence.scala7
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala6
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala12
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala25
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala8
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala15
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabel.scala32
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala8
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala14
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala9
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPatientCriterion.scala18
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala10
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala1
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala7
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala4
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala7
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala1
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala1
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala9
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala38
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala8
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala4
28 files changed, 148 insertions, 151 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityArm.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityArm.scala
index 4d6d0a2..71423e8 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityArm.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityArm.scala
@@ -2,10 +2,15 @@ package xyz.driver.pdsuidomain.formats.json.eligibilityarm
import play.api.libs.functional.syntax._
import play.api.libs.json._
+import xyz.driver.entities.patient.CancerType
import xyz.driver.pdsuicommon.domain.{LongId, StringId}
-import xyz.driver.pdsuidomain.entities.{EligibilityArm, EligibilityArmDisease, EligibilityArmWithDiseases, Trial}
+import xyz.driver.pdsuidomain.entities.{EligibilityArm, EligibilityArmDisease, EligibilityArmWithDiseases}
-final case class ApiEligibilityArm(id: Long, name: String, originalName: String, trialId: String, diseases: Seq[String]) {
+final case class ApiEligibilityArm(id: Long,
+ name: String,
+ originalName: String,
+ trialId: String,
+ diseases: Seq[String]) {
def toDomain: EligibilityArmWithDiseases = {
val eligibilityArm = EligibilityArm(
@@ -16,11 +21,15 @@ final case class ApiEligibilityArm(id: Long, name: String, originalName: String,
deleted = None // if we have an ApiEligibilityArm object, the EligibilityArm itself has not been deleted
)
- EligibilityArmWithDiseases(eligibilityArm, this.diseases.map { disease =>
- val condition = Trial.Condition.fromString(disease)
- .getOrElse(throw new NoSuchElementException(s"unknown condition $disease"))
- EligibilityArmDisease(eligibilityArm.id, condition)
- })
+ EligibilityArmWithDiseases(
+ eligibilityArm,
+ this.diseases.map { disease =>
+ val condition = CancerType
+ .fromString(disease)
+ .getOrElse(throw new NoSuchElementException(s"unknown condition $disease"))
+ EligibilityArmDisease(eligibilityArm.id, condition)
+ }
+ )
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityCreateArm.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityCreateArm.scala
index 6cf71a2..087fed5 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityCreateArm.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiEligibilityCreateArm.scala
@@ -1,8 +1,9 @@
package xyz.driver.pdsuidomain.formats.json.eligibilityarm
-import xyz.driver.pdsuicommon.domain.{LongId, StringId}
-import xyz.driver.pdsuidomain.entities.{EligibilityArm, EligibilityArmDisease, EligibilityArmWithDiseases, Trial}
import play.api.libs.json.{Format, Json}
+import xyz.driver.entities.patient.CancerType
+import xyz.driver.pdsuicommon.domain.{LongId, StringId}
+import xyz.driver.pdsuidomain.entities.{EligibilityArm, EligibilityArmDisease, EligibilityArmWithDiseases}
final case class ApiCreateEligibilityArm(name: String, trialId: String, diseases: Seq[String]) {
@@ -14,11 +15,15 @@ final case class ApiCreateEligibilityArm(name: String, trialId: String, diseases
originalName = name
)
- EligibilityArmWithDiseases(eligibilityArm, diseases.map { disease =>
- val condition = Trial.Condition.fromString(disease)
- .getOrElse(throw new NoSuchElementException(s"unknown condition $disease"))
- EligibilityArmDisease(eligibilityArm.id, condition)
- })
+ EligibilityArmWithDiseases(
+ eligibilityArm,
+ diseases.map { disease =>
+ val condition = CancerType
+ .fromString(disease)
+ .getOrElse(throw new NoSuchElementException(s"unknown condition $disease"))
+ EligibilityArmDisease(eligibilityArm.id, condition)
+ }
+ )
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiPartialEligibilityArm.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiPartialEligibilityArm.scala
index 3d9445f..aca22ef 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiPartialEligibilityArm.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/eligibilityarm/ApiPartialEligibilityArm.scala
@@ -1,7 +1,8 @@
package xyz.driver.pdsuidomain.formats.json.eligibilityarm
import play.api.libs.json.{Format, Json}
-import xyz.driver.pdsuidomain.entities.{EligibilityArmDisease, EligibilityArmWithDiseases, Trial}
+import xyz.driver.entities.patient.CancerType
+import xyz.driver.pdsuidomain.entities.{EligibilityArmDisease, EligibilityArmWithDiseases}
final case class ApiPartialEligibilityArm(name: String, diseases: Seq[String]) {
@@ -10,9 +11,9 @@ final case class ApiPartialEligibilityArm(name: String, diseases: Seq[String]) {
val armDiseases = diseases.map { disease =>
EligibilityArmDisease(
armWithDisease.eligibilityArm.id,
- Trial.Condition.fromString(disease).getOrElse(throw new NoSuchElementException(s"unknown condition $disease")))
+ CancerType.fromString(disease).getOrElse(throw new NoSuchElementException(s"unknown condition $disease")))
}
- EligibilityArmWithDiseases(arm ,armDiseases)
+ EligibilityArmWithDiseases(arm, armDiseases)
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/evidence/ApiPatientLabelEvidence.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/evidence/ApiPatientLabelEvidence.scala
index e0f23e3..c7a6de9 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/evidence/ApiPatientLabelEvidence.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/evidence/ApiPatientLabelEvidence.scala
@@ -3,7 +3,6 @@ package xyz.driver.pdsuidomain.formats.json.evidence
import java.time.LocalDate
import play.api.libs.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
import xyz.driver.pdsuidomain.entities.PatientLabelEvidenceView
final case class ApiPatientLabelEvidence(id: Long,
@@ -22,13 +21,13 @@ object ApiPatientLabelEvidence {
def fromDomain(x: PatientLabelEvidenceView) = ApiPatientLabelEvidence(
id = x.id.id,
- value = FuzzyValue.valueToString(x.value),
+ value = x.value.toString,
evidenceText = x.evidenceText,
documentId = x.documentId.map(_.id),
evidenceId = x.evidenceId.map(_.id),
reportId = x.reportId.map(_.toString),
- documentType = x.documentType,
+ documentType = x.documentType.name,
date = x.date.get,
- providerType = x.providerType
+ providerType = x.providerType.name
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala
index d486749..edb0603 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiCriterionLabel.scala
@@ -1,11 +1,11 @@
package xyz.driver.pdsuidomain.formats.json.label
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId}
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.{Criterion, CriterionLabel}
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json._
-import xyz.driver.entities.labels.{Label, LabelCategory}
+import xyz.driver.entities.labels.{Label, LabelCategory, LabelValue}
/**
* @param value Yes|No
@@ -34,7 +34,7 @@ object ApiCriterionLabel {
labelId = x.labelId.map(_.id),
categoryId = x.categoryId.map(_.id),
value = x.value.map { x =>
- FuzzyValue.valueToString(FuzzyValue.fromBoolean(x))
+ LabelValue.fromBoolean(x).toString
},
isDefining = x.isDefining
)
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala
index f8161af..1497679 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/label/ApiExtractedDataLabel.scala
@@ -1,11 +1,11 @@
package xyz.driver.pdsuidomain.formats.json.label
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId}
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.{ExtractedData, ExtractedDataLabel}
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json._
-import xyz.driver.entities.labels.{Label, LabelCategory}
+import xyz.driver.entities.labels.{Label, LabelCategory, LabelValue}
final case class ApiExtractedDataLabel(id: Option[Long], categoryId: Option[Long], value: Option[String]) {
@@ -14,7 +14,7 @@ final case class ApiExtractedDataLabel(id: Option[Long], categoryId: Option[Long
dataId = dataId,
labelId = id.map(LongId[Label]),
categoryId = categoryId.map(LongId[LabelCategory]),
- value = value.map(FuzzyValue.fromString)
+ value = value.flatMap(LabelValue.fromString)
)
}
@@ -27,8 +27,8 @@ object ApiExtractedDataLabel {
Format(Reads
.of[String]
.filter(ValidationError("unknown value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]))
)(ApiExtractedDataLabel.apply, unlift(ApiExtractedDataLabel.unapply))
@@ -36,6 +36,6 @@ object ApiExtractedDataLabel {
def fromDomain(dataLabel: ExtractedDataLabel) = ApiExtractedDataLabel(
id = dataLabel.labelId.map(_.id),
categoryId = dataLabel.categoryId.map(_.id),
- value = dataLabel.value.map(FuzzyValue.valueToString)
+ value = dataLabel.value.map(_.toString)
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala
index db430ae..585d4ed 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/ApiPatient.scala
@@ -7,6 +7,8 @@ import xyz.driver.pdsuicommon.domain.{StringId, UuidId}
import xyz.driver.pdsuidomain.entities.{Patient, PatientOrderId}
import play.api.libs.functional.syntax._
import play.api.libs.json.{Format, JsPath}
+import xyz.driver.entities.common.FullName
+import xyz.driver.entities.patient
final case class ApiPatient(id: String,
status: String,
@@ -17,24 +19,35 @@ final case class ApiPatient(id: String,
previousAssignee: Option[String],
lastActiveUser: Option[String],
lastUpdate: ZonedDateTime,
- condition: String,
+ disease: String,
orderId: UUID) {
private def extractStatus(status: String): Patient.Status =
PatientStatus.statusFromString
.applyOrElse(status, (s: String) => throw new NoSuchElementException(s"Unknown status $s"))
+ private def parseName(name: String): FullName[Patient] =
+ name.split(" ") match {
+ case Array() => throw new NoSuchElementException(s"Patient's name cannot be empty")
+ case Array(first) => FullName.fromStrings[Patient](first, "", "")
+ case Array(first, last) => FullName.fromStrings[Patient](first, "", last)
+ case Array(first, middle, last) => FullName.fromStrings[Patient](first, middle, last)
+ case _ => throw new NoSuchElementException(s"Patient's name is ambiguous")
+ }
+
def toDomain = Patient(
id = UuidId(this.id),
status = extractStatus(this.status),
- name = this.name,
+ name = parseName(this.name),
dob = this.dob,
assignee = this.assignee.map(StringId(_)),
previousStatus = this.previousStatus.map(extractStatus),
previousAssignee = this.previousAssignee.map(StringId(_)),
lastActiveUserId = this.lastActiveUser.map(StringId(_)),
isUpdateRequired = false,
- condition = this.condition,
+ disease = patient.CancerType
+ .fromString(this.disease)
+ .getOrElse(throw new IllegalArgumentException(s"Unknown cancer type ${this.disease}")),
orderId = PatientOrderId(this.orderId),
lastUpdate = this.lastUpdate.toLocalDateTime
)
@@ -53,21 +66,21 @@ object ApiPatient {
(JsPath \ "previousAssignee").formatNullable[String] and
(JsPath \ "lastActiveUser").formatNullable[String] and
(JsPath \ "lastUpdate").format[ZonedDateTime] and
- (JsPath \ "condition").format[String] and
+ (JsPath \ "disease").format[String] and
(JsPath \ "orderId").format[UUID]
)(ApiPatient.apply, unlift(ApiPatient.unapply))
def fromDomain(patient: Patient) = ApiPatient(
id = patient.id.toString,
status = PatientStatus.statusToString(patient.status),
- name = patient.name,
+ name = patient.name.toString(),
dob = patient.dob,
assignee = patient.assignee.map(_.id),
previousStatus = patient.previousStatus.map(PatientStatus.statusToString),
previousAssignee = patient.previousAssignee.map(_.id),
lastActiveUser = patient.lastActiveUserId.map(_.id),
lastUpdate = ZonedDateTime.of(patient.lastUpdate, ZoneId.of("Z")),
- condition = patient.condition,
+ disease = patient.disease.toString,
orderId = patient.orderId.id
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala
index 4136715..55c8149 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/eligible/ApiPatientEligibleTrial.scala
@@ -5,7 +5,7 @@ import java.util.UUID
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
import xyz.driver.pdsuidomain.services.PatientEligibleTrialService.RichPatientEligibleTrial
final case class ApiPatientEligibleTrial(id: Long,
@@ -30,8 +30,8 @@ object ApiPatientEligibleTrial {
Reads
.of[String]
.filter(ValidationError("unknown eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]
)) and
@@ -45,7 +45,7 @@ object ApiPatientEligibleTrial {
trialTitle = eligibleTrialWithTrial.trial.title,
arms = eligibleTrialWithTrial.arms.map(_.armName),
hypothesisId = eligibleTrialWithTrial.group.hypothesisId.id,
- eligibleTrialWithTrial.group.verifiedEligibilityStatus.map(FuzzyValue.valueToString),
+ eligibleTrialWithTrial.group.verifiedEligibilityStatus.map(_.toString),
eligibleTrialWithTrial.group.isVerified
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala
index 91d0a0e..d92872c 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPartialPatientLabel.scala
@@ -6,15 +6,14 @@ import org.davidbild.tristate.contrib.play.ToJsPathOpsFromJsPath
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
final case class ApiPartialPatientLabel(primaryValue: Option[String], verifiedPrimaryValue: Tristate[String]) {
def applyTo(orig: PatientLabel): PatientLabel = {
orig.copy(
- primaryValue = primaryValue.map(FuzzyValue.fromString).orElse(orig.primaryValue),
- verifiedPrimaryValue =
- verifiedPrimaryValue.cata(x => Some(FuzzyValue.fromString(x)), None, orig.verifiedPrimaryValue)
+ primaryValue = primaryValue.flatMap(LabelValue.fromString).orElse(orig.primaryValue),
+ verifiedPrimaryValue = verifiedPrimaryValue.cata(x => LabelValue.fromString(x), None, orig.verifiedPrimaryValue)
)
}
}
@@ -26,8 +25,8 @@ object ApiPartialPatientLabel {
Format(Reads
.of[String]
.filter(ValidationError("unknown primary value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String])) and
(JsPath \ "verifiedPrimaryValue").formatTristate[String](
@@ -35,8 +34,8 @@ object ApiPartialPatientLabel {
Reads
.of[String]
.filter(ValidationError("unknown verified primary value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]
))
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabel.scala
index fc8687b..cc8532d 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabel.scala
@@ -4,7 +4,7 @@ import xyz.driver.pdsuidomain.entities.PatientLabel
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
final case class ApiPatientLabel(id: Long,
labelId: Long,
@@ -20,25 +20,33 @@ object ApiPatientLabel {
implicit val apiPatientLabelJsonFormat: Format[ApiPatientLabel] = (
(JsPath \ "id").format[Long] and
(JsPath \ "labelId").format[Long] and
- (JsPath \ "primaryValue").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
- (JsPath \ "verifiedPrimaryValue").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
- }), Writes.of[String])) and
+ (JsPath \ "primaryValue").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown value"))({
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
+ }),
+ Writes.of[String])) and
+ (JsPath \ "verifiedPrimaryValue").formatNullable[String](
+ Format(Reads
+ .of[String]
+ .filter(ValidationError("unknown value"))({
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
+ }),
+ Writes.of[String])) and
(JsPath \ "score").format[Int] and
(JsPath \ "isImplicitMatch").format[Boolean] and
(JsPath \ "isVisible").format[Boolean] and
(JsPath \ "isVerified").format[Boolean]
- ) (ApiPatientLabel.apply, unlift(ApiPatientLabel.unapply))
+ )(ApiPatientLabel.apply, unlift(ApiPatientLabel.unapply))
def fromDomain(patientLabel: PatientLabel, isVerified: Boolean): ApiPatientLabel = ApiPatientLabel(
id = patientLabel.id.id,
labelId = patientLabel.labelId.id,
- primaryValue = patientLabel.primaryValue.map(FuzzyValue.valueToString),
- verifiedPrimaryValue = patientLabel.verifiedPrimaryValue.map(FuzzyValue.valueToString),
+ primaryValue = patientLabel.primaryValue.map(_.toString),
+ verifiedPrimaryValue = patientLabel.verifiedPrimaryValue.map(_.toString),
score = patientLabel.score,
isImplicitMatch = patientLabel.isImplicitMatch,
isVisible = patientLabel.isVisible,
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala
index ae64c33..16b9cc9 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/label/ApiPatientLabelDefiningCriteria.scala
@@ -3,7 +3,7 @@ package xyz.driver.pdsuidomain.formats.json.patient.label
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
import xyz.driver.pdsuidomain.entities.PatientLabel
final case class ApiPatientLabelDefiningCriteria(labelId: Long, value: Option[String])
@@ -16,14 +16,14 @@ object ApiPatientLabelDefiningCriteria {
Format(Reads
.of[String]
.filter(ValidationError("unknown value"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]))
)(ApiPatientLabelDefiningCriteria.apply, unlift(ApiPatientLabelDefiningCriteria.unapply))
def fromDomain(x: PatientLabel) = ApiPatientLabelDefiningCriteria(
labelId = x.labelId.id,
- value = x.verifiedPrimaryValue.map(FuzzyValue.valueToString)
+ value = x.verifiedPrimaryValue.map(_.toString)
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala
index 399bc7d..09538b8 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterion.scala
@@ -6,16 +6,16 @@ import org.davidbild.tristate.contrib.play.ToJsPathOpsFromJsPath
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json.{Format, JsPath, Reads, Writes}
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
final case class ApiPartialPatientCriterion(eligibilityStatus: Option[String],
verifiedEligibilityStatus: Tristate[String]) {
def applyTo(orig: PatientCriterion): PatientCriterion = {
orig.copy(
- eligibilityStatus = eligibilityStatus.map(FuzzyValue.fromString).orElse(orig.eligibilityStatus),
+ eligibilityStatus = eligibilityStatus.flatMap(LabelValue.fromString).orElse(orig.eligibilityStatus),
verifiedEligibilityStatus =
- verifiedEligibilityStatus.cata(x => Some(FuzzyValue.fromString(x)), None, orig.verifiedEligibilityStatus)
+ verifiedEligibilityStatus.cata(x => LabelValue.fromString(x), None, orig.verifiedEligibilityStatus)
)
}
}
@@ -28,8 +28,8 @@ object ApiPartialPatientCriterion {
Reads
.of[String]
.filter(ValidationError("unknown eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]
)) and
@@ -38,8 +38,8 @@ object ApiPartialPatientCriterion {
Reads
.of[String]
.filter(ValidationError("unknown verified eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]
))
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala
index 4b08970..b7616a1 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPartialPatientCriterionList.scala
@@ -1,10 +1,11 @@
package xyz.driver.pdsuidomain.formats.json.patient.trial
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId}
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.PatientCriterion
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json.{Format, JsPath, Reads, Writes}
+import xyz.driver.entities.labels.LabelValue
import xyz.driver.pdsuidomain.services.PatientCriterionService.DraftPatientCriterion
final case class ApiPartialPatientCriterionList(id: Long,
@@ -13,7 +14,7 @@ final case class ApiPartialPatientCriterionList(id: Long,
def toDomain: DraftPatientCriterion = DraftPatientCriterion(
id = LongId[PatientCriterion](id),
- eligibilityStatus = eligibilityStatus.map(FuzzyValue.fromString),
+ eligibilityStatus = eligibilityStatus.flatMap(LabelValue.fromString),
isVerified = isVerified
)
}
@@ -26,8 +27,8 @@ object ApiPartialPatientCriterionList {
Reads
.of[String]
.filter(ValidationError("unknown eligibility status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}),
Writes.of[String]
)) and
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPatientCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPatientCriterion.scala
index 6eeb40b..b9bf772 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPatientCriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patient/trial/ApiPatientCriterion.scala
@@ -2,12 +2,12 @@ package xyz.driver.pdsuidomain.formats.json.patient.trial
import java.time.{ZoneId, ZonedDateTime}
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId}
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.{PatientCriterion, PatientCriterionArm}
import play.api.data.validation.ValidationError
import play.api.libs.functional.syntax._
import play.api.libs.json.{Format, JsPath, Reads, Writes}
-import xyz.driver.entities.labels.Label
+import xyz.driver.entities.labels.{Label, LabelValue}
final case class ApiPatientCriterion(id: Long,
labelId: Long,
@@ -39,13 +39,13 @@ object ApiPatientCriterion {
(JsPath \ "criterionIsCompound").format[Boolean] and
(JsPath \ "arms").format[List[String]] and
(JsPath \ "eligibilityStatus").formatNullable[String](Format(Reads.of[String].filter(ValidationError("unknown status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}), Writes.of[String])) and
(JsPath \ "verifiedEligibilityStatus").formatNullable[String](Format(
Reads.of[String].filter(ValidationError("unknown status"))({
- case x if FuzzyValue.fromString.isDefinedAt(x) => true
- case _ => false
+ case x if LabelValue.fromString(x).isDefined => true
+ case _ => false
}), Writes.of[String])) and
(JsPath \ "isVerified").format[Boolean] and
(JsPath \ "isVisible").format[Boolean] and
@@ -61,13 +61,13 @@ object ApiPatientCriterion {
criterionId = patientCriterion.criterionId.id,
criterionText = patientCriterion.criterionText,
criterionValue = patientCriterion.criterionValue.map { x =>
- FuzzyValue.valueToString(FuzzyValue.fromBoolean(x))
+ LabelValue.fromBoolean(x).toString
},
criterionIsDefining = patientCriterion.criterionIsDefining,
criterionIsCompound = patientCriterion.criterionValue.isEmpty,
arms = arms.map(_.armName),
- eligibilityStatus = patientCriterion.eligibilityStatus.map(FuzzyValue.valueToString),
- verifiedEligibilityStatus = patientCriterion.verifiedEligibilityStatus.map(FuzzyValue.valueToString),
+ eligibilityStatus = patientCriterion.eligibilityStatus.map(_.toString),
+ verifiedEligibilityStatus = patientCriterion.verifiedEligibilityStatus.map(_.toString),
isVerified = patientCriterion.isVerified,
isVisible = patientCriterion.isVisible,
lastUpdate = ZonedDateTime.of(patientCriterion.lastUpdate, ZoneId.of("Z"))
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala
index 2e5943e..1f8c683 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiCreateRecord.scala
@@ -22,8 +22,6 @@ final case class ApiCreateRecord(disease: String, patientId: String, requestId:
caseId = None,
physician = None,
meta = None,
- predictedMeta = None,
- predictedDocuments = None,
lastUpdate = LocalDateTime.now()
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala
index e7b58cd..fc0a2e7 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/record/ApiRecord.scala
@@ -101,8 +101,6 @@ final case class ApiRecord(id: Long,
Some(TextJson(JsonSerializer.deserialize[List[MedicalRecord.Meta]](this.meta)))
}
},
- predictedMeta = None,
- predictedDocuments = None,
lastUpdate = this.lastUpdate.toLocalDateTime()
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala
index dbd0a43..61e0e7f 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/common.scala
@@ -3,7 +3,7 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
import java.time.{LocalDate, LocalDateTime, ZoneId, ZonedDateTime}
import spray.json._
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId, StringId, UuidId}
+import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId}
object common {
@@ -55,14 +55,6 @@ object common {
}
}
- implicit def fuzzyValueFormat: RootJsonFormat[FuzzyValue] = new RootJsonFormat[FuzzyValue] {
- override def write(value: FuzzyValue): JsString = JsString(FuzzyValue.valueToString(value))
- override def read(json: JsValue): FuzzyValue = json match {
- case JsString(value) => FuzzyValue.fromString(value)
- case _ => deserializationError(s"Expected value as FuzzyValue, but got $json")
- }
- }
-
implicit val integerFormat: RootJsonFormat[Integer] = new RootJsonFormat[Integer] {
override def write(obj: Integer): JsNumber = JsNumber(obj.intValue())
override def read(json: JsValue): Integer = json match {
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala
index 6c33fe5..69e8b75 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/document.scala
@@ -26,7 +26,7 @@ object document {
"PN" -> RequiredType.PN
)
- implicit val documentMetaFormat: RootJsonFormat[Meta] = jsonFormat3(Meta.apply)
+ implicit val documentMetaFormat: RootJsonFormat[Meta] = jsonFormat2(Meta.apply)
implicit val documentTypeFormat: RootJsonFormat[DocumentType] = new RootJsonFormat[DocumentType] {
override def read(json: JsValue): DocumentType = json match {
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
index 39d5c59..85d614d 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/export.scala
@@ -5,6 +5,7 @@ import xyz.driver.entities.labels.Label
import xyz.driver.pdsuidomain.entities.{Arm, Criterion}
import xyz.driver.pdsuidomain.entities.export.patient._
import xyz.driver.pdsuidomain.entities.export.trial.{ExportTrialArm, ExportTrialLabelCriterion, ExportTrialWithLabels}
+import xyz.driver.formats.json.labels._
object export {
import DefaultJsonProtocol._
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala
index d6eadbd..5d5585a 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/extracteddata.scala
@@ -1,10 +1,11 @@
package xyz.driver.pdsuidomain.formats.json.sprayformats
import spray.json._
-import xyz.driver.entities.labels.{Label, LabelCategory}
-import xyz.driver.pdsuicommon.domain.{FuzzyValue, LongId, TextJson}
+import xyz.driver.entities.labels.{Label, LabelCategory, LabelValue}
+import xyz.driver.pdsuicommon.domain.{LongId, TextJson}
import xyz.driver.pdsuidomain.entities._
import xyz.driver.pdsuidomain.services.ExtractedDataService.RichExtractedData
+import xyz.driver.formats.json.labels._
object extracteddata {
import DefaultJsonProtocol._
@@ -44,7 +45,7 @@ object extracteddata {
val value = fields
.get("value")
- .map(_.convertTo[FuzzyValue])
+ .map(_.convertTo[LabelValue])
ExtractedDataLabel(
id = LongId(0),
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala
index 95c0674..2b0dfe5 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patient.scala
@@ -3,6 +3,8 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
import spray.json._
import xyz.driver.core.json.EnumJsonFormat
import xyz.driver.pdsuidomain.entities._
+import xyz.driver.formats.json.common._
+import xyz.driver.formats.json.patient._
object patient {
import DefaultJsonProtocol._
@@ -38,7 +40,7 @@ object patient {
"previousAssignee" -> patient.previousAssignee.toJson,
"lastActiveUser" -> patient.lastActiveUserId.toJson,
"lastUpdate" -> patient.lastUpdate.toJson,
- "condition" -> patient.condition.toJson,
+ "disease" -> patient.disease.toJson,
"orderId" -> patient.orderId.toJson
)
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala
index affb346..7e8c220 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientcriterion.scala
@@ -1,9 +1,10 @@
package xyz.driver.pdsuidomain.formats.json.sprayformats
import spray.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
import xyz.driver.pdsuidomain.entities._
import xyz.driver.pdsuidomain.services.PatientCriterionService.{DraftPatientCriterion, RichPatientCriterion}
+import xyz.driver.formats.json.labels._
object patientcriterion {
import DefaultJsonProtocol._
@@ -14,13 +15,13 @@ object patientcriterion {
val eligibilityStatus = if (fields.contains("eligibilityStatus")) {
fields
.get("eligibilityStatus")
- .map(_.convertTo[FuzzyValue])
+ .map(_.convertTo[LabelValue])
} else orig.eligibilityStatus
val verifiedEligibilityStatus = if (fields.contains("verifiedEligibilityStatus")) {
fields
.get("verifiedEligibilityStatus")
- .map(_.convertTo[FuzzyValue])
+ .map(_.convertTo[LabelValue])
} else orig.verifiedEligibilityStatus
orig.copy(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala
index 0520ef2..746c7b4 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientdefiningcriteria.scala
@@ -2,6 +2,7 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
import spray.json._
import xyz.driver.pdsuidomain.entities.PatientLabel
+import xyz.driver.formats.json.labels._
object patientdefiningcriteria {
import DefaultJsonProtocol._
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala
index 041d9da..342d3a8 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patienteligibletrial.scala
@@ -3,6 +3,7 @@ package xyz.driver.pdsuidomain.formats.json.sprayformats
import spray.json._
import xyz.driver.pdsuidomain.entities._
import xyz.driver.pdsuidomain.services.PatientEligibleTrialService.RichPatientEligibleTrial
+import xyz.driver.formats.json.labels._
object patienteligibletrial {
import DefaultJsonProtocol._
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala
index b36949e..57dca1e 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/patientlabel.scala
@@ -1,9 +1,12 @@
package xyz.driver.pdsuidomain.formats.json.sprayformats
import spray.json._
-import xyz.driver.pdsuicommon.domain.FuzzyValue
+import xyz.driver.entities.labels.LabelValue
import xyz.driver.pdsuidomain.entities._
import xyz.driver.pdsuidomain.services.PatientLabelService.RichPatientLabel
+import xyz.driver.formats.json.labels._
+import xyz.driver.pdsuidomain.formats.json.sprayformats.record._
+import xyz.driver.pdsuidomain.formats.json.sprayformats.document._
object patientlabel {
import DefaultJsonProtocol._
@@ -13,12 +16,12 @@ object patientlabel {
case JsObject(fields) =>
val primaryValue = fields
.get("primaryValue")
- .map(_.convertTo[Option[FuzzyValue]])
+ .map(_.convertTo[Option[LabelValue]])
.getOrElse(orig.primaryValue)
val verifiedPrimaryValue = fields
.get("verifiedPrimaryValue")
- .map(_.convertTo[Option[FuzzyValue]])
+ .map(_.convertTo[Option[LabelValue]])
.getOrElse(orig.verifiedPrimaryValue)
orig.copy(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala
index 8eef44a..65687c1 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/record.scala
@@ -67,7 +67,6 @@ object record {
override def write(obj: Duplicate) =
JsObject(
"type" -> "duplicate".toJson,
- "predicted" -> obj.predicted.toJson,
"startPage" -> obj.startPage.toJson,
"endPage" -> obj.endPage.toJson,
"startOriginalPage" -> obj.startOriginalPage.toJson,
@@ -76,10 +75,6 @@ object record {
override def read(json: JsValue): Duplicate = json match {
case JsObject(fields) =>
- val predicted = fields
- .get("predicted")
- .map(_.convertTo[Boolean])
-
val startPage = fields
.get("startPage")
.map(_.convertTo[Double])
@@ -101,7 +96,6 @@ object record {
.map(_.convertTo[Double])
Duplicate(
- predicted = predicted,
startPage = startPage,
endPage = endPage,
startOriginalPage = startOriginalPage,
@@ -114,27 +108,16 @@ object record {
implicit val reorderMetaFormat: RootJsonFormat[Reorder] = new RootJsonFormat[Reorder] {
override def write(obj: Reorder) =
- JsObject(
- "type" -> "reorder".toJson,
- "predicted" -> obj.predicted.toJson,
- "items" -> obj.items.toJson
- )
+ JsObject("type" -> "reorder".toJson, "items" -> obj.items.toJson)
override def read(json: JsValue): Reorder = json match {
case JsObject(fields) =>
- val predicted = fields
- .get("predicted")
- .map(_.convertTo[Boolean])
-
val items = fields
.get("items")
.map(_.convertTo[Seq[Int]])
.getOrElse(deserializationError(s"Reorder meta json object does not contain `items` field: $json"))
- Reorder(
- predicted = predicted,
- items = items
- )
+ Reorder(items)
case _ => deserializationError(s"Expected JsObject as Reorder meta of medical record, but got $json")
}
@@ -142,27 +125,16 @@ object record {
implicit val rotateMetaFormat: RootJsonFormat[Rotation] = new RootJsonFormat[Rotation] {
override def write(obj: Rotation) =
- JsObject(
- "type" -> "rotation".toJson,
- "predicted" -> obj.predicted.toJson,
- "items" -> obj.items.toJson
- )
+ JsObject("type" -> "rotation".toJson, "items" -> obj.items.toJson)
override def read(json: JsValue): Rotation = json match {
case JsObject(fields) =>
- val predicted = fields
- .get("predicted")
- .map(_.convertTo[Boolean])
-
val items = fields
.get("items")
.map(_.convertTo[Map[String, Int]])
.getOrElse(deserializationError(s"Rotation meta json object does not contain `items` field: $json"))
- Rotation(
- predicted = predicted,
- items = items
- )
+ Rotation(items = items)
case _ => deserializationError(s"Expected JsObject as Rotation meta of medical record, but got $json")
}
@@ -233,8 +205,6 @@ object record {
caseId = None,
physician = None,
meta = None,
- predictedMeta = None,
- predictedDocuments = None,
lastUpdate = LocalDateTime.now()
)
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala
index aeec90f..b25ed1d 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/sprayformats/trial.scala
@@ -9,8 +9,8 @@ import xyz.driver.pdsuidomain.entities._
object trial {
import DefaultJsonProtocol._
- import common._
import Trial._
+ import common._
implicit val trialStatusFormat = new EnumJsonFormat[Status](
"New" -> Status.New,
@@ -24,12 +24,6 @@ object trial {
"Archived" -> Status.Archived
)
- implicit val conditionFormat = new EnumJsonFormat[Condition](
- "Breast" -> Condition.Breast,
- "Lung" -> Condition.Lung,
- "Prostate" -> Condition.Prostate
- )
-
implicit val trialWriter: RootJsonWriter[Trial] = new RootJsonWriter[Trial] {
override def write(obj: Trial) =
JsObject(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala
index fbf506b..133a2c8 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/trial/ApiTrial.scala
@@ -2,11 +2,11 @@ package xyz.driver.pdsuidomain.formats.json.trial
import java.time.{ZoneId, ZonedDateTime}
import java.util.UUID
-import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId}
-import xyz.driver.pdsuidomain.entities.Trial
import play.api.libs.functional.syntax._
import play.api.libs.json._
+import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId}
+import xyz.driver.pdsuidomain.entities.Trial
final case class ApiTrial(id: String,
externalId: UUID,