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authorMarvin Bertin <marvin.bertin@gmail.com>2017-10-10 16:31:00 -0700
committerGitHub <noreply@github.com>2017-10-10 16:31:00 -0700
commit385a9a99e5a95c3d623cddd927c37564e32dbd2d (patch)
tree0671a39174899dce09ade3c571ef21bab6172e0e /src/main/scala/xyz/driver/pdsuidomain/services
parent0653b90dddc294fddb0e81059aef00b202113d78 (diff)
parent9c95eb7247cb0818af9a9e4afe884698360f994c (diff)
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Merge pull request #35 from drivergroup/trial-46-disease-entity
Trial 46 disease entity
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuidomain/services')
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/EligibilityArmService.scala32
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/EligibilityVerificationService.scala3
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/PatientCriterionService.scala28
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/PatientEligibleTrialService.scala5
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/PatientHypothesisService.scala16
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/PatientLabelService.scala20
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/TrialService.scala20
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeEligibilityVerificationService.scala3
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala39
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/rest/RestEligibilityVerificationService.scala5
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala17
11 files changed, 131 insertions, 57 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityArmService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityArmService.scala
index b34b34e..1e0f65e 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityArmService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityArmService.scala
@@ -5,7 +5,7 @@ import xyz.driver.pdsuicommon.db._
import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuicommon.error.DomainError
import xyz.driver.pdsuicommon.logging._
-import xyz.driver.pdsuidomain.entities.EligibilityArm
+import xyz.driver.pdsuidomain.entities.{EligibilityArm, EligibilityArmWithDiseases, SlotArm}
import scala.concurrent.Future
@@ -19,10 +19,14 @@ object EligibilityArmService {
def userMessage: String = "EligibilityArm not found"
}
+ trait SlotArmNotFoundError {
+ def userMessage: String = "SlotArm not found"
+ }
+
sealed trait GetByIdReply
object GetByIdReply {
- final case class Entity(x: EligibilityArm) extends GetByIdReply
+ final case class Entity(x: EligibilityArmWithDiseases) extends GetByIdReply
type Error = GetByIdReply with DomainError
@@ -39,7 +43,7 @@ object EligibilityArmService {
object GetListReply {
type Error = GetListReply with DomainError
- final case class EntityList(xs: Seq[EligibilityArm], totalFound: Int) extends GetListReply
+ final case class EntityList(xs: Seq[EligibilityArmWithDiseases], totalFound: Int) extends GetListReply
case object AuthorizationError
extends GetListReply with DomainError.AuthorizationError with DefaultAccessDeniedError
@@ -48,7 +52,7 @@ object EligibilityArmService {
sealed trait UpdateReply
object UpdateReply {
- final case class Updated(updated: EligibilityArm) extends UpdateReply
+ final case class Updated(updated: EligibilityArmWithDiseases) extends UpdateReply
type Error = UpdateReply with DomainError
@@ -59,7 +63,7 @@ object EligibilityArmService {
final case class CommonError(userMessage: String) extends UpdateReply with DomainError
- final case class AlreadyExistsError(x: EligibilityArm) extends UpdateReply with DomainError {
+ final case class AlreadyExistsError(x: EligibilityArmWithDiseases) extends UpdateReply with DomainError {
val userMessage = s"The arm with such name of trial already exists."
}
@@ -71,16 +75,18 @@ object EligibilityArmService {
sealed trait CreateReply
object CreateReply {
- final case class Created(x: EligibilityArm) extends CreateReply
+ final case class Created(x: EligibilityArmWithDiseases) extends CreateReply
type Error = CreateReply with DomainError
case object AuthorizationError
extends CreateReply with DefaultAccessDeniedError with DomainError.AuthorizationError
+ case object NotFoundError extends CreateReply with SlotArmNotFoundError with DomainError.NotFoundError
+
final case class CommonError(userMessage: String) extends CreateReply with DomainError
- final case class AlreadyExistsError(x: EligibilityArm) extends CreateReply with DomainError {
+ final case class AlreadyExistsError(x: EligibilityArmWithDiseases) extends CreateReply with DomainError {
val userMessage = s"The arm with this name of trial already exists."
}
@@ -114,13 +120,19 @@ trait EligibilityArmService {
pagination: Option[Pagination] = None)(
implicit requestContext: AuthenticatedRequestContext): Future[GetListReply]
- def getById(armId: LongId[EligibilityArm])(
+ def getByEligibilityId(armId: LongId[EligibilityArm])(
implicit requestContext: AuthenticatedRequestContext): Future[GetByIdReply]
- def create(draftEligibilityArm: EligibilityArm)(
+ def getBySlotId(armId: LongId[SlotArm],
+ filter: SearchFilterExpr = SearchFilterExpr.Empty,
+ sorting: Option[Sorting] = None,
+ pagination: Option[Pagination] = None)(
+ implicit requestContext: AuthenticatedRequestContext): Future[GetListReply]
+
+ def create(slotArmId: LongId[SlotArm], draftEligibilityArm: EligibilityArmWithDiseases)(
implicit requestContext: AuthenticatedRequestContext): Future[CreateReply]
- def update(origEligibilityArm: EligibilityArm, draftEligibilityArm: EligibilityArm)(
+ def update(origEligibilityArm: EligibilityArmWithDiseases, draftEligibilityArm: EligibilityArmWithDiseases)(
implicit requestContext: AuthenticatedRequestContext): Future[UpdateReply]
def delete(id: LongId[EligibilityArm])(implicit requestContext: AuthenticatedRequestContext): Future[DeleteReply]
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityVerificationService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityVerificationService.scala
index 7395400..c09dd9a 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityVerificationService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/EligibilityVerificationService.scala
@@ -4,6 +4,7 @@ import xyz.driver.core.Id
import xyz.driver.core.rest.AuthorizedServiceRequestContext
import xyz.driver.entities.patient.{CancerType, Patient}
import xyz.driver.entities.users.AuthUserInfo
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.eligibility.{MatchedPatient, MismatchRankedLabels}
import xyz.driver.pdsuidomain.entities.Arm
@@ -14,6 +15,6 @@ trait EligibilityVerificationService {
def getMatchedPatients()(implicit ctx: AuthorizedServiceRequestContext[AuthUserInfo]): ListT[Future, MatchedPatient]
- def getMismatchRankedLabels(patientId: Id[Patient], cancerType: CancerType, excludedArms: Seq[Id[Arm]])(
+ def getMismatchRankedLabels(patientId: Id[Patient], cancerType: CancerType, excludedArms: Seq[LongId[Arm]])(
implicit ctx: AuthorizedServiceRequestContext[AuthUserInfo]): Future[MismatchRankedLabels]
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/PatientCriterionService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/PatientCriterionService.scala
index 6d85f85..4d0e188 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/PatientCriterionService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/PatientCriterionService.scala
@@ -2,7 +2,7 @@ package xyz.driver.pdsuidomain.services
import java.time.LocalDateTime
-import xyz.driver.entities.labels.Label
+import xyz.driver.entities.labels.{Label, LabelValue}
import xyz.driver.pdsuicommon.auth.AuthenticatedRequestContext
import xyz.driver.pdsuicommon.db._
import xyz.driver.pdsuicommon.domain._
@@ -15,7 +15,7 @@ import scala.concurrent.Future
object PatientCriterionService {
final case class DraftPatientCriterion(id: LongId[PatientCriterion],
- eligibilityStatus: Option[FuzzyValue],
+ eligibilityStatus: Option[LabelValue],
isVerified: Option[Boolean]) {
def applyTo(orig: PatientCriterion) = {
orig.copy(
@@ -37,13 +37,21 @@ object PatientCriterionService {
def userMessage: String = "Access denied"
}
+ final case class RichPatientCriterion(patientCriterion: PatientCriterion,
+ labelId: LongId[Label],
+ armList: List[PatientCriterionArm])
+
+ object RichPatientCriterion {
+ implicit def toPhiString(x: RichPatientCriterion): PhiString = {
+ phi"RichPatientCriterion(patientCriterion=${x.patientCriterion}, labelId=${x.labelId}, arms=${x.armList})"
+ }
+ }
+
sealed trait GetListReply
object GetListReply {
type Error = GetListReply with DomainError
- final case class EntityList(xs: Seq[(PatientCriterion, LongId[Label], List[PatientCriterionArm])],
- totalFound: Int,
- lastUpdate: Option[LocalDateTime])
+ final case class EntityList(xs: Seq[RichPatientCriterion], totalFound: Int, lastUpdate: Option[LocalDateTime])
extends GetListReply
case object AuthorizationError
@@ -60,8 +68,7 @@ object PatientCriterionService {
object GetByIdReply {
type Error = GetByIdReply with DomainError
- final case class Entity(x: PatientCriterion, labelId: LongId[Label], armList: List[PatientCriterionArm])
- extends GetByIdReply
+ final case class Entity(x: RichPatientCriterion) extends GetByIdReply
case object AuthorizationError
extends GetByIdReply with DomainError.AuthorizationError with DefaultAccessDeniedError
@@ -74,8 +81,8 @@ object PatientCriterionService {
final case class CommonError(userMessage: String) extends GetByIdReply with DomainError
implicit def toPhiString(reply: GetByIdReply): PhiString = reply match {
- case x: DomainError => phi"GetByIdReply.Error($x)"
- case Entity(x, labelId, armList) => phi"GetByIdReply.Entity(entity=$x, labelId=$labelId, armList=$armList)"
+ case x: DomainError => phi"GetByIdReply.Error($x)"
+ case Entity(x) => phi"GetByIdReply.Entity($x)"
}
}
@@ -83,8 +90,7 @@ object PatientCriterionService {
object UpdateReply {
type Error = UpdateReply with DomainError
- final case class Updated(x: PatientCriterion, labelId: LongId[Label], armList: List[PatientCriterionArm])
- extends UpdateReply
+ final case class Updated(x: RichPatientCriterion) extends UpdateReply
case object UpdatedList extends UpdateReply
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/PatientEligibleTrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/PatientEligibleTrialService.scala
index abb3f8a..d9013c6 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/PatientEligibleTrialService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/PatientEligibleTrialService.scala
@@ -1,12 +1,12 @@
package xyz.driver.pdsuidomain.services
-import xyz.driver.entities.labels.Label
import xyz.driver.pdsuicommon.auth.AuthenticatedRequestContext
import xyz.driver.pdsuicommon.db.{Pagination, SearchFilterExpr, Sorting}
import xyz.driver.pdsuicommon.domain.{LongId, UuidId}
import xyz.driver.pdsuicommon.error.DomainError
import xyz.driver.pdsuicommon.logging._
import xyz.driver.pdsuidomain.entities.{Trial, _}
+import xyz.driver.pdsuidomain.services.PatientCriterionService.RichPatientCriterion
import scala.concurrent.Future
@@ -71,8 +71,7 @@ object PatientEligibleTrialService {
sealed trait GetCriterionListOfGroupReply
object GetCriterionListOfGroupReply {
- final case class EntityList(xs: Seq[(PatientCriterion, LongId[Label], List[PatientCriterionArm])], totalFound: Int)
- extends GetCriterionListOfGroupReply
+ final case class EntityList(xs: Seq[RichPatientCriterion], totalFound: Int) extends GetCriterionListOfGroupReply
type Error = GetCriterionListOfGroupReply with DomainError
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/PatientHypothesisService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/PatientHypothesisService.scala
index f782cab..07734ed 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/PatientHypothesisService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/PatientHypothesisService.scala
@@ -23,9 +23,17 @@ object PatientHypothesisService {
def userMessage: String = "Access denied"
}
+ final case class RichPatientHypothesis(patientHypothesis: PatientHypothesis, isRequired: Boolean)
+
+ object RichPatientHypothesis {
+ implicit def toPhiString(x: RichPatientHypothesis): PhiString = {
+ phi"RichPatientHypothesis(patientHypothesis=${x.patientHypothesis}, isRequired=${x.isRequired})"
+ }
+ }
+
sealed trait GetListReply
object GetListReply {
- final case class EntityList(xs: Seq[(PatientHypothesis, Boolean)], totalFound: Int) extends GetListReply
+ final case class EntityList(xs: Seq[RichPatientHypothesis], totalFound: Int) extends GetListReply
case object AuthorizationError
extends GetListReply with DomainError.AuthorizationError with DefaultAccessDeniedError
@@ -38,7 +46,7 @@ object PatientHypothesisService {
sealed trait GetByIdReply
object GetByIdReply {
- final case class Entity(x: PatientHypothesis, isRequired: Boolean) extends GetByIdReply
+ final case class Entity(x: RichPatientHypothesis) extends GetByIdReply
type Error = GetByIdReply with DomainError
@@ -53,8 +61,8 @@ object PatientHypothesisService {
final case class CommonError(userMessage: String) extends GetByIdReply with DomainError
implicit def toPhiString(reply: GetByIdReply): PhiString = reply match {
- case x: DomainError => phi"GetByIdReply.Error($x)"
- case Entity(x, isRequired) => phi"GetByIdReply.Entity($x, $isRequired)"
+ case x: DomainError => phi"GetByIdReply.Error($x)"
+ case Entity(x) => phi"GetByIdReply.Entity($x)"
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/PatientLabelService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/PatientLabelService.scala
index 2a4d7fc..cede890 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/PatientLabelService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/PatientLabelService.scala
@@ -24,9 +24,17 @@ object PatientLabelService {
def userMessage: String = "Access denied"
}
+ final case class RichPatientLabel(patientLabel: PatientLabel, isVerified: Boolean)
+
+ object RichPatientLabel {
+ implicit def toPhiString(x: RichPatientLabel): PhiString = {
+ phi"RichPatientLabel(patientLabel=${x.patientLabel}, isVerified=${x.isVerified})"
+ }
+ }
+
sealed trait GetListReply
object GetListReply {
- final case class EntityList(xs: Seq[(PatientLabel, Boolean)], totalFound: Int) extends GetListReply
+ final case class EntityList(xs: Seq[RichPatientLabel], totalFound: Int) extends GetListReply
case object AuthorizationError
extends GetListReply with DomainError.AuthorizationError with DefaultAccessDeniedError
@@ -52,7 +60,7 @@ object PatientLabelService {
sealed trait GetByLabelIdReply
object GetByLabelIdReply {
- final case class Entity(x: PatientLabel, isVerified: Boolean) extends GetByLabelIdReply
+ final case class Entity(x: RichPatientLabel) extends GetByLabelIdReply
type Error = GetByLabelIdReply with DomainError
@@ -68,7 +76,7 @@ object PatientLabelService {
implicit def toPhiString(reply: GetByLabelIdReply): PhiString = reply match {
case x: DomainError => phi"GetByIdReply.Error($x)"
- case Entity(x, y) => phi"GetByIdReply.Entity($x, $y)"
+ case Entity(x) => phi"GetByIdReply.Entity($x)"
}
}
@@ -76,7 +84,7 @@ object PatientLabelService {
object UpdateReply {
type Error = UpdateReply with DomainError
- final case class Updated(updated: PatientLabel, isVerified: Boolean) extends UpdateReply
+ final case class Updated(updated: RichPatientLabel) extends UpdateReply
case object NotFoundError extends UpdateReply with DefaultNotFoundError with DomainError.NotFoundError
@@ -89,8 +97,8 @@ object PatientLabelService {
final case class CommonError(userMessage: String) extends UpdateReply with DomainError
implicit def toPhiString(reply: UpdateReply): PhiString = reply match {
- case Updated(x, y) => phi"Updated($x, $y)"
- case x: Error => DomainError.toPhiString(x)
+ case Updated(x) => phi"Updated($x)"
+ case x: Error => DomainError.toPhiString(x)
}
}
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/TrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/TrialService.scala
index 5bd99a8..92233e4 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/TrialService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/TrialService.scala
@@ -5,6 +5,7 @@ import java.time.LocalDateTime
import akka.NotUsed
import akka.stream.scaladsl.Source
import akka.util.ByteString
+import xyz.driver.entities.patient.CancerType
import xyz.driver.pdsuicommon.auth.AuthenticatedRequestContext
import xyz.driver.pdsuicommon.db._
import xyz.driver.pdsuicommon.domain.StringId
@@ -68,6 +69,20 @@ object TrialService {
extends GetTrialWithLabelsReply with DomainError.AuthorizationError with DefaultAccessDeniedError
}
+ sealed trait GetTrialsWithLabelsReply
+ object GetTrialsWithLabelsReply {
+ type Error = GetTrialsWithLabelsReply with DomainError
+
+ final case class EntityList(xs: Seq[ExportTrialWithLabels]) extends GetTrialsWithLabelsReply
+
+ case object NotFoundError extends GetTrialsWithLabelsReply with DomainError.NotFoundError {
+ def userMessage: String = "Trials for disease are not found"
+ }
+
+ case object AuthorizationError
+ extends GetTrialsWithLabelsReply with DomainError.AuthorizationError with DefaultAccessDeniedError
+ }
+
sealed trait UpdateReply
object UpdateReply {
type Error = UpdateReply with DomainError
@@ -94,9 +109,12 @@ trait TrialService {
def getById(id: StringId[Trial])(implicit requestContext: AuthenticatedRequestContext): Future[GetByIdReply]
- def getTrialWithLabels(trialId: StringId[Trial], condition: String)(
+ def getTrialWithLabels(trialId: StringId[Trial], cancerType: CancerType)(
implicit requestContext: AuthenticatedRequestContext): Future[GetTrialWithLabelsReply]
+ def getTrialsWithLabels(cancerType: CancerType)(
+ implicit requestContext: AuthenticatedRequestContext): Future[GetTrialsWithLabelsReply]
+
def getPdfSource(trialId: StringId[Trial])(
implicit requestContext: AuthenticatedRequestContext): Future[Source[ByteString, NotUsed]]
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeEligibilityVerificationService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeEligibilityVerificationService.scala
index 1e1a3ea..c9b5443 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeEligibilityVerificationService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeEligibilityVerificationService.scala
@@ -5,6 +5,7 @@ import xyz.driver.core.{Id, generators}
import xyz.driver.entities.patient
import xyz.driver.entities.patient.Patient
import xyz.driver.entities.users.AuthUserInfo
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.eligibility.MismatchRankedLabels
import xyz.driver.pdsuidomain.entities.{Arm, eligibility}
import xyz.driver.pdsuidomain.services.EligibilityVerificationService
@@ -21,7 +22,7 @@ class FakeEligibilityVerificationService extends EligibilityVerificationService
override def getMismatchRankedLabels(patientId: Id[Patient],
cancerType: patient.CancerType,
- excludedArms: Seq[Id[Arm]])(
+ excludedArms: Seq[LongId[Arm]])(
implicit ctx: AuthorizedServiceRequestContext[AuthUserInfo]): Future[eligibility.MismatchRankedLabels] =
Future.successful(
MismatchRankedLabels(
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala
index 9253f88..0431d95 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/fake/FakeTrialService.scala
@@ -7,11 +7,12 @@ import akka.stream.scaladsl.Source
import akka.util.ByteString
import xyz.driver.core.generators
import xyz.driver.entities.labels.Label
+import xyz.driver.entities.patient.CancerType
import xyz.driver.pdsuicommon.auth.AuthenticatedRequestContext
import xyz.driver.pdsuicommon.db._
import xyz.driver.pdsuicommon.domain.{LongId, StringId, UuidId}
-import xyz.driver.pdsuidomain.entities.{Arm, Criterion, Trial}
import xyz.driver.pdsuidomain.entities.export.trial.{ExportTrialArm, ExportTrialLabelCriterion, ExportTrialWithLabels}
+import xyz.driver.pdsuidomain.entities.{Criterion, EligibilityArm, Trial}
import xyz.driver.pdsuidomain.services.TrialService
import scala.concurrent.Future
@@ -56,30 +57,36 @@ class FakeTrialService extends TrialService {
implicit requestContext: AuthenticatedRequestContext): Future[GetListReply] =
Future.successful(GetListReply.EntityList(Seq(trial), 1, None))
- override def getTrialWithLabels(trialId: StringId[Trial], condition: String)(
- implicit requestContext: AuthenticatedRequestContext): Future[GetTrialWithLabelsReply] = {
- Future.successful(
- GetTrialWithLabelsReply.Entity(ExportTrialWithLabels(
- StringId[Trial]("NCT" + generators.nextInt(999999).toString),
- UuidId[Trial](generators.nextUuid()),
- generators.oneOf("adenocarcinoma", "breast", "prostate"),
- LocalDateTime.now(),
- labelVersion = 1L,
- generators.listOf(new ExportTrialArm(
- LongId[Arm](generators.nextInt(999999).toLong),
+ override def getTrialWithLabels(trialId: StringId[Trial], cancerType: CancerType)(
+ implicit requestContext: AuthenticatedRequestContext): Future[GetTrialWithLabelsReply] =
+ Future.successful(GetTrialWithLabelsReply.Entity(nextExportTrialWithLabels()))
+
+ override def getTrialsWithLabels(cancerType: CancerType)(
+ implicit requestContext: AuthenticatedRequestContext): Future[GetTrialsWithLabelsReply] =
+ Future.successful(GetTrialsWithLabelsReply.EntityList(generators.seqOf(nextExportTrialWithLabels())))
+
+ private def nextExportTrialWithLabels() =
+ ExportTrialWithLabels(
+ StringId[Trial]("NCT" + generators.nextInt(999999).toString),
+ UuidId[Trial](generators.nextUuid()),
+ LocalDateTime.now(),
+ labelVersion = 1L,
+ generators.listOf(
+ new ExportTrialArm(
+ LongId[EligibilityArm](generators.nextInt(999999).toLong),
generators.nextName().value
)),
- generators.listOf(new ExportTrialLabelCriterion(
+ generators.listOf(
+ new ExportTrialLabelCriterion(
LongId[Criterion](generators.nextInt(999999).toLong),
generators.nextOption(generators.nextBoolean()),
LongId[Label](generators.nextInt(999999).toLong),
- generators.setOf(LongId[Arm](generators.nextInt(999999).toLong)),
+ generators.setOf(LongId[EligibilityArm](generators.nextInt(999999).toLong)),
generators.nextName().value,
generators.nextBoolean(),
generators.nextBoolean()
))
- )))
- }
+ )
def update(origTrial: Trial, draftTrial: Trial)(
implicit requestContext: AuthenticatedRequestContext): Future[UpdateReply] =
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestEligibilityVerificationService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestEligibilityVerificationService.scala
index f6879d0..8869106 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestEligibilityVerificationService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestEligibilityVerificationService.scala
@@ -8,6 +8,7 @@ import xyz.driver.core.rest.{AuthorizedServiceRequestContext, RestService, Servi
import xyz.driver.entities.patient
import xyz.driver.entities.patient.Patient
import xyz.driver.entities.users.AuthUserInfo
+import xyz.driver.pdsuicommon.domain.LongId
import xyz.driver.pdsuidomain.entities.eligibility.{MatchedPatient, MismatchRankedLabels}
import xyz.driver.pdsuidomain.entities.{Arm, eligibility}
import xyz.driver.pdsuidomain.services.EligibilityVerificationService
@@ -33,11 +34,11 @@ class RestEligibilityVerificationService(transport: ServiceTransport, baseUri: U
override def getMismatchRankedLabels(patientId: Id[Patient],
cancerType: patient.CancerType,
- excludedArms: Seq[Id[Arm]])(
+ excludedArms: Seq[LongId[Arm]])(
implicit ctx: AuthorizedServiceRequestContext[AuthUserInfo]): Future[eligibility.MismatchRankedLabels] = {
val query =
- Seq("disease" -> cancerType.toString.toUpperCase, "ineligible_arms" -> excludedArms.map(_.value).mkString(","))
+ Seq("disease" -> cancerType.toString.toUpperCase, "ineligible_arms" -> excludedArms.map(_.id).mkString(","))
val request = get(baseUri, s"/v1/patients/$patientId/labels", query)
optionalResponse[MismatchRankedLabels](transport.sendRequest(ctx)(request))
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala
index 7e33919..ea719e1 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestTrialService.scala
@@ -16,7 +16,9 @@ import xyz.driver.pdsuidomain.entities.export.trial.ExportTrialWithLabels
import xyz.driver.pdsuidomain.formats.json.ListResponse
import xyz.driver.pdsuidomain.formats.json.trial.ApiTrial
import xyz.driver.pdsuidomain.services.TrialService
+import spray.json.DefaultJsonProtocol._
import akka.http.scaladsl.marshallers.sprayjson.SprayJsonSupport._
+import xyz.driver.entities.patient.CancerType
import xyz.driver.pdsuidomain.formats.json.sprayformats.export._
class RestTrialService(transport: ServiceTransport, baseUri: Uri)(implicit protected val materializer: Materializer,
@@ -36,9 +38,9 @@ class RestTrialService(transport: ServiceTransport, baseUri: Uri)(implicit prote
}
}
- def getTrialWithLabels(trialId: StringId[Trial], disease: String)(
+ def getTrialWithLabels(trialId: StringId[Trial], cancerType: CancerType)(
implicit requestContext: AuthenticatedRequestContext): Future[GetTrialWithLabelsReply] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/export/trial/$disease/$trialId"))
+ val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/export/trial/$cancerType/$trialId"))
for {
response <- transport.sendRequestGetResponse(requestContext)(request)
reply <- apiResponse[ExportTrialWithLabels](response)
@@ -47,6 +49,17 @@ class RestTrialService(transport: ServiceTransport, baseUri: Uri)(implicit prote
}
}
+ def getTrialsWithLabels(cancerType: CancerType)(
+ implicit requestContext: AuthenticatedRequestContext): Future[GetTrialsWithLabelsReply] = {
+ val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/export/trial/$cancerType"))
+ for {
+ response <- transport.sendRequestGetResponse(requestContext)(request)
+ reply <- apiResponse[Seq[ExportTrialWithLabels]](response)
+ } yield {
+ GetTrialsWithLabelsReply.EntityList(reply)
+ }
+ }
+
def getPdfSource(trialId: StringId[Trial])(
implicit requestContext: AuthenticatedRequestContext): Future[Source[ByteString, NotUsed]] = {
val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/trial/$trialId/source"))