diff options
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuidomain/entities/export/trial')
4 files changed, 126 insertions, 0 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrial.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrial.scala new file mode 100644 index 0000000..1aed121 --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrial.scala @@ -0,0 +1,27 @@ +package xyz.driver.pdsuidomain.entities.export.trial + +import java.time.LocalDateTime + +import xyz.driver.pdsuicommon.domain._ +import xyz.driver.pdsuicommon.logging._ +import xyz.driver.pdsuidomain.entities.Trial + +final case class ExportTrial(nctId: StringId[Trial], + trialId: UuidId[Trial], + condition: Trial.Condition, + lastReviewed: LocalDateTime) + +object ExportTrial { + + implicit def toPhiString(x: ExportTrial): PhiString = { + import x._ + phi"ExportTrial(nctId=$nctId, trialId=$trialId, condition=${Unsafe(condition)}, lastReviewed=$lastReviewed)" + } + + def fromDomain(x: Trial) = ExportTrial( + nctId = x.id, + trialId = x.externalId, + condition = x.condition, + lastReviewed = x.lastUpdate + ) +} diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala new file mode 100644 index 0000000..5a9a406 --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala @@ -0,0 +1,15 @@ +package xyz.driver.pdsuidomain.entities.export.trial + +import xyz.driver.pdsuicommon.domain._ +import xyz.driver.pdsuicommon.logging._ +import xyz.driver.pdsuidomain.entities.Arm + +final case class ExportTrialArm(armId: LongId[Arm], armName: String) + +object ExportTrialArm { + + implicit def toPhiString(x: ExportTrialArm): PhiString = { + import x._ + phi"ExportTrialArm(armId=$armId, armName=${Unsafe(armName)})" + } +} diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala new file mode 100644 index 0000000..7bff22c --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala @@ -0,0 +1,32 @@ +package xyz.driver.pdsuidomain.entities.export.trial + +import xyz.driver.pdsuicommon.domain._ +import xyz.driver.pdsuicommon.logging._ +import xyz.driver.pdsuidomain.entities.{Arm, Criterion, Label, RawTrialLabel} + +final case class ExportTrialLabelCriterion(criterionId: LongId[Criterion], + value: Option[Boolean], + labelId: LongId[Label], + armIds: Set[LongId[Arm]], + criteria: String, + isCompound: Boolean, + isDefining: Boolean) + +object ExportTrialLabelCriterion { + + implicit def toPhiString(x: ExportTrialLabelCriterion): PhiString = { + import x._ + phi"TrialLabelCriterion(criterionId=$criterionId, value=$value, labelId=$labelId, " + + phi"criteria=${Unsafe(criteria)}, isCompound=$isCompound, isDefining=$isDefining)" + } + + def fromRaw(x: RawTrialLabel, armIds: Set[LongId[Arm]]) = ExportTrialLabelCriterion( + criterionId = x.criterionId, + value = x.value, + labelId = x.labelId, + armIds = armIds, + criteria = x.criteria, + isCompound = x.isCompound, + isDefining = x.isDefining + ) +} diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala new file mode 100644 index 0000000..1655a88 --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala @@ -0,0 +1,52 @@ +package xyz.driver.pdsuidomain.entities.export.trial + +import java.time.LocalDateTime + +import xyz.driver.pdsuicommon.domain._ +import xyz.driver.pdsuicommon.logging._ +import xyz.driver.pdsuidomain.entities.{RawTrialLabel, Trial} + +import scala.collection.breakOut + +final case class ExportTrialWithLabels(nctId: StringId[Trial], + trialId: UuidId[Trial], + condition: String, + lastReviewed: LocalDateTime, + labelVersion: Long, + arms: List[ExportTrialArm], + criteria: List[ExportTrialLabelCriterion]) + +object ExportTrialWithLabels { + + implicit def toPhiString(x: ExportTrialWithLabels): PhiString = { + import x._ + phi"TrialWithLabels(nctId=$nctId, trialId=$trialId, condition=${Unsafe(condition)}, " + + phi"lastReviewed=$lastReviewed, labelVersion=${Unsafe(labelVersion)}, arms=$arms, criteria=$criteria)" + } + + def fromRaw(rawData: List[RawTrialLabel]): ExportTrialWithLabels = { + val trials: Set[StringId[Trial]] = rawData.map(_.nctId)(breakOut) + + assert(trials.size == 1, "There are more than one trials in the rawData") + val trial = rawData.head + + ExportTrialWithLabels( + nctId = trial.nctId, + trialId = trial.trialId, + condition = trial.condition, + lastReviewed = trial.lastReviewed, + labelVersion = 1, // TODO It is needed to replace this mock label version. + arms = rawData.groupBy(_.armId).map { case (armId, rawTrials) => + ExportTrialArm(armId, rawTrials.head.armName) + }(breakOut), + criteria = rawData.groupBy { x => + (x.criterionId, x.labelId) + }.map { + case (_, rawTrialLabels) => + val armIds = rawTrialLabels.map(_.criterionArmId).toSet + ExportTrialLabelCriterion.fromRaw(rawTrialLabels.head, armIds) + }(breakOut) + ) + } + +} |