diff options
Diffstat (limited to 'src/main/scala/xyz/driver/pdsuidomain/entities')
10 files changed, 86 insertions, 14 deletions
diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/Criterion.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/Criterion.scala index 2432251..26ced22 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/Criterion.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/Criterion.scala @@ -30,7 +30,7 @@ object Criterion { } } -final case class CriterionArm(criterionId: LongId[Criterion], armId: LongId[Arm]) +final case class CriterionArm(criterionId: LongId[Criterion], armId: LongId[EligibilityArm]) object CriterionArm { diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/EligibilityArm.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/EligibilityArm.scala new file mode 100644 index 0000000..50b49ad --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/EligibilityArm.scala @@ -0,0 +1,42 @@ +package xyz.driver.pdsuidomain.entities + +import java.time.LocalDateTime + +import xyz.driver.entities.patient.CancerType +import xyz.driver.pdsuicommon.domain.{LongId, StringId} +import xyz.driver.pdsuicommon.logging._ + +final case class EligibilityArm(id: LongId[EligibilityArm], + name: String, + originalName: String, + trialId: StringId[Trial], + deleted: Option[LocalDateTime] = None) + +object EligibilityArm { + + implicit def toPhiString(x: EligibilityArm): PhiString = { + import x._ + phi"Arm(id=$id, name=${Unsafe(x.name)}, trialId=${Unsafe(x.trialId)})" + } +} + +final case class EligibilityArmDisease(eligibilityArmId: LongId[EligibilityArm], disease: CancerType) + +object EligibilityArmDisease { + + implicit def toPhiString(x: EligibilityArmDisease): PhiString = { + phi"EligibilityArmDisease(eligibilityArmId=${Unsafe(x.eligibilityArmId)}, disease=${Unsafe(x.disease)})" + } + +} + +final case class EligibilityArmWithDiseases(eligibilityArm: EligibilityArm, + eligibilityArmDiseases: Seq[EligibilityArmDisease]) + +object EligibilityArmWithDiseases { + + implicit def toPhiString(x: EligibilityArmWithDiseases): PhiString = { + import x._ + phi"EligibilityArmWithDiseases(eligibilityArm=$eligibilityArm, eligibilityArmDiseases=$eligibilityArmDiseases)" + } +} diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/Intervention.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/Intervention.scala index 9ccc267..f02bedc 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/Intervention.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/Intervention.scala @@ -188,7 +188,7 @@ object InterventionType { } } -final case class InterventionArm(armId: LongId[Arm], interventionId: LongId[Intervention]) +final case class InterventionArm(armId: LongId[SlotArm], interventionId: LongId[Intervention]) object InterventionArm { implicit def toPhiString(x: InterventionArm): PhiString = { @@ -208,8 +208,7 @@ final case class Intervention(id: LongId[Intervention], isActive: Boolean, deliveryMethod: Option[String]) { def deliveryMethodIsCorrect: Boolean = { - if (this.typeId.nonEmpty) { - this.deliveryMethod.nonEmpty && + if (this.typeId.nonEmpty && this.deliveryMethod.nonEmpty) { InterventionType.All .getOrElse(this.typeId.get, throw new IllegalArgumentException(s"Not found Intervention type ${this.typeId}")) .deliveryMethods diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/MedicalRecord.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/MedicalRecord.scala index ed35db4..591b8bd 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/MedicalRecord.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/MedicalRecord.scala @@ -156,7 +156,8 @@ final case class MedicalRecord(id: LongId[MedicalRecord], caseId: Option[CaseId], physician: Option[String], meta: Option[TextJson[List[Meta]]], - lastUpdate: LocalDateTime) { + lastUpdate: LocalDateTime, + totalPages: Int) { import MedicalRecord.Status._ diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/SlotArmEligibilityArm.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/SlotArmEligibilityArm.scala new file mode 100644 index 0000000..70114de --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/SlotArmEligibilityArm.scala @@ -0,0 +1,13 @@ +package xyz.driver.pdsuidomain.entities + +import xyz.driver.pdsuicommon.domain.LongId +import xyz.driver.pdsuicommon.logging._ + +final case class SlotArmEligibilityArm(slotArmId: LongId[SlotArm], eligibilityArmId: LongId[EligibilityArm]) + +object SlotArmEligibilityArm { + implicit def toPhiString(x: SlotArmEligibilityArm): PhiString = { + import x._ + phi"SlotArmEligibilityArm(slotArmId=$slotArmId, eligibilityArmId=$eligibilityArmId)" + } +} diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/SlotArms.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/SlotArms.scala new file mode 100644 index 0000000..932de38 --- /dev/null +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/SlotArms.scala @@ -0,0 +1,20 @@ +package xyz.driver.pdsuidomain.entities + +import java.time.LocalDateTime + +import xyz.driver.pdsuicommon.domain.{LongId, StringId} +import xyz.driver.pdsuicommon.logging._ + +final case class SlotArm(id: LongId[SlotArm], + name: String, + originalName: String, + trialId: StringId[Trial], + deleted: Option[LocalDateTime] = None) + +object SlotArm { + + implicit def toPhiString(x: SlotArm): PhiString = { + import x._ + phi"Arm(id=$id, name=${Unsafe(x.name)}, trialId=${Unsafe(x.trialId)})" + } +} diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/Trial.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/Trial.scala index 7584e9c..ac5feef 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/Trial.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/Trial.scala @@ -2,7 +2,6 @@ package xyz.driver.pdsuidomain.entities import java.time.LocalDateTime -import xyz.driver.entities.patient.CancerType import xyz.driver.pdsuicommon.domain.{LongId, StringId, User, UuidId} import xyz.driver.pdsuicommon.logging._ import xyz.driver.pdsuicommon.utils.Utils @@ -69,7 +68,6 @@ final case class Trial(id: StringId[Trial], previousAssignee: Option[StringId[User]], lastActiveUserId: Option[StringId[User]], lastUpdate: LocalDateTime, - disease: CancerType, phase: String, hypothesisId: Option[UuidId[Hypothesis]], studyDesignId: Option[LongId[StudyDesign]], diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala index 5a9a406..fbac0df 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialArm.scala @@ -2,14 +2,14 @@ package xyz.driver.pdsuidomain.entities.export.trial import xyz.driver.pdsuicommon.domain._ import xyz.driver.pdsuicommon.logging._ -import xyz.driver.pdsuidomain.entities.Arm +import xyz.driver.pdsuidomain.entities.EligibilityArm -final case class ExportTrialArm(armId: LongId[Arm], armName: String) +final case class ExportTrialArm(armId: LongId[EligibilityArm], armName: String, diseaseList: Seq[String]) object ExportTrialArm { implicit def toPhiString(x: ExportTrialArm): PhiString = { import x._ - phi"ExportTrialArm(armId=$armId, armName=${Unsafe(armName)})" + phi"ExportTrialArm(armId=$armId, armName=${Unsafe(armName)}, diseaseList=${Unsafe(diseaseList)})" } } diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala index 385bbbe..8376e34 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialLabelCriterion.scala @@ -3,12 +3,12 @@ package xyz.driver.pdsuidomain.entities.export.trial import xyz.driver.entities.labels.Label import xyz.driver.pdsuicommon.domain._ import xyz.driver.pdsuicommon.logging._ -import xyz.driver.pdsuidomain.entities.{Arm, Criterion} +import xyz.driver.pdsuidomain.entities.{Criterion, EligibilityArm} final case class ExportTrialLabelCriterion(criterionId: LongId[Criterion], value: Option[Boolean], labelId: LongId[Label], - armIds: Set[LongId[Arm]], + armIds: Set[LongId[EligibilityArm]], criteria: String, isCompound: Boolean, isDefining: Boolean) diff --git a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala index 3a9434b..3681945 100644 --- a/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala +++ b/src/main/scala/xyz/driver/pdsuidomain/entities/export/trial/ExportTrialWithLabels.scala @@ -8,7 +8,6 @@ import xyz.driver.pdsuidomain.entities.Trial final case class ExportTrialWithLabels(nctId: StringId[Trial], trialId: UuidId[Trial], - disease: String, lastReviewed: LocalDateTime, labelVersion: Long, arms: List[ExportTrialArm], @@ -18,7 +17,7 @@ object ExportTrialWithLabels { implicit def toPhiString(x: ExportTrialWithLabels): PhiString = { import x._ - phi"TrialWithLabels(nctId=$nctId, trialId=$trialId, disease=${Unsafe(disease)}, " + + phi"TrialWithLabels(nctId=$nctId, trialId=$trialId}, " + phi"lastReviewed=$lastReviewed, labelVersion=${Unsafe(labelVersion)}, arms=$arms, criteria=$criteria)" } } |