Completed the following changes & testing, see todo.txt for more information

1 - Add a way to specify the output directory
2 - Added an option "file_extension" to control the suffix for cs files generated, defaults to ".cs"
3 - Added the option for "umbrella_namespace" used when nest_classes=false and having name conflicts
4 - Optionally remove dependencies to csharp options
5 - Investigate command line parsing library
6 - Investigate calling protoc directly
7 - Unable to resolve dependencies correctly
8 - Added several (20) nunits to automate the command-line invocation of each option

17 files changed, 1393 insertions, 51 deletions

diff --git a/.gitignore b/.gitignore
index 1382b2b5..f37fd256 100644
--- a/.gitignore
+++ b/.gitignore
@@ -29,3 +29,5 @@ mono/TestResult.xml
 mono/.libs
 mono/*.exe
 mono/*.dll
+
+src/ProtocolBuffers/objCF
\ No newline at end of file
diff --git a/protos/google/protobuf/csharp_options.proto b/protos/google/protobuf/csharp_options.proto
index 184eef20..38445789 100644
--- a/protos/google/protobuf/csharp_options.proto
+++ b/protos/google/protobuf/csharp_options.proto
@@ -38,6 +38,23 @@ message CSharpFileOptions {
 
   // Generate attributes indicating non-CLS-compliance
   optional bool cls_compliance = 8 [default = true];
+
+  // ROK - 2010-09-03 additions to csoptions ...
+  // The extension that should be appended to the umbrella_classname when creating files.
+  optional string file_extension = 221 [default = ".cs"];
+  
+  // A nested namespace for the umbrella class.  Helpful for name collisions caused by 
+  // umbrella_classname conflicting with an existing type.  This will be automatically
+  // set to 'Proto' if a collision is detected with types being generated.  This value
+  // is ignored when nest_classes == true
+  optional string umbrella_namespace = 222;
+  
+  // The output path for the source file(s) generated
+  optional string output_directory = 223 [default = "."];
+
+  // Will ignore the type generations and remove dependencies for the descriptor proto
+  // files that declare their package to be "google.protobuf"
+  optional bool ignore_google_protobuf = 224 [default = false];
 }
 
 extend FileOptions {
diff --git a/src/ProtoGen.Test/ProtoGen.Test.csproj b/src/ProtoGen.Test/ProtoGen.Test.csproj
index f08495e5..2ac2cb11 100644
--- a/src/ProtoGen.Test/ProtoGen.Test.csproj
+++ b/src/ProtoGen.Test/ProtoGen.Test.csproj
@@ -50,10 +50,14 @@
       <HintPath>..\..\lib\Rhino.Mocks.dll</HintPath>
     </Reference>
     <Reference Include="System" />
+    <Reference Include="System.Data" />
+    <Reference Include="System.Xml" />
   </ItemGroup>
   <ItemGroup>
     <Compile Include="DependencyResolutionTest.cs" />
     <Compile Include="Properties\AssemblyInfo.cs" />
+    <Compile Include="TempFile.cs" />
+    <Compile Include="TestPreprocessing.cs" />
   </ItemGroup>
   <ItemGroup>
     <ProjectReference Include="..\ProtocolBuffers\ProtocolBuffers.csproj">
@@ -68,6 +72,20 @@
   <ItemGroup>
     <None Include="Properties\Google.ProtocolBuffers.ProtoGen.Test.snk" />
   </ItemGroup>
+  <ItemGroup>
+    <None Include="..\..\lib\protoc.exe">
+      <Link>protoc.exe</Link>
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </None>
+    <None Include="..\..\protos\google\protobuf\csharp_options.proto">
+      <Link>google\protobuf\csharp_options.proto</Link>
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </None>
+    <None Include="..\..\protos\google\protobuf\descriptor.proto">
+      <Link>google\protobuf\descriptor.proto</Link>
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </None>
+  </ItemGroup>
   <Import Project="$(MSBuildToolsPath)\Microsoft.CSharp.targets" />
   <!-- To modify your build process, add your task inside one of the targets below and uncomment it. 
        Other similar extension points exist, see Microsoft.Common.targets.
diff --git a/src/ProtoGen.Test/TempFile.cs b/src/ProtoGen.Test/TempFile.cs
new file mode 100644
index 00000000..fdc637a8
--- /dev/null
+++ b/src/ProtoGen.Test/TempFile.cs
@@ -0,0 +1,48 @@
+using System;
+using System.Collections.Generic;
+using System.IO;
+using System.Text;
+
+namespace Google.ProtocolBuffers.ProtoGen
+{
+	class ProtoFile : TempFile
+	{
+		public ProtoFile (string filename, string contents)
+		{
+			_tempFile = filename;
+			File.WriteAllText(_tempFile, contents);
+		}
+	}
+	class TempFile : IDisposable
+	{
+		protected string _tempFile;
+
+		public static TempFile Attach(string path) 
+		{
+			TempFile f = new TempFile();
+			f._tempFile = path;
+			return f;
+		}
+
+		protected TempFile() { }
+		public TempFile(string contents)
+		{
+			File.WriteAllText(_tempFile = Path.GetTempFileName(), contents, Encoding.ASCII);
+		}
+
+		public string TempPath { get { return _tempFile; } }
+
+		public void ChangeExtension(string ext)
+		{
+			string newFile = Path.ChangeExtension(_tempFile, ext);
+			File.Move(_tempFile, newFile);
+			_tempFile = newFile;
+		}
+
+		public void Dispose()
+		{
+			if(File.Exists(_tempFile))
+				File.Delete(_tempFile);
+		}
+	}
+}
diff --git a/src/ProtoGen.Test/TestPreprocessing.cs b/src/ProtoGen.Test/TestPreprocessing.cs
new file mode 100644
index 00000000..7a2ea621
--- /dev/null
+++ b/src/ProtoGen.Test/TestPreprocessing.cs
@@ -0,0 +1,600 @@
+#region Copyright notice and license
+// Protocol Buffers - Google's data interchange format
+// Copyright 2008 Google Inc.  All rights reserved.
+// http://github.com/jskeet/dotnet-protobufs/
+// Original C++/Java/Python code:
+// http://code.google.com/p/protobuf/
+//
+// Redistribution and use in source and binary forms, with or without
+// modification, are permitted provided that the following conditions are
+// met:
+//
+//     * Redistributions of source code must retain the above copyright
+// notice, this list of conditions and the following disclaimer.
+//     * Redistributions in binary form must reproduce the above
+// copyright notice, this list of conditions and the following disclaimer
+// in the documentation and/or other materials provided with the
+// distribution.
+//     * Neither the name of Google Inc. nor the names of its
+// contributors may be used to endorse or promote products derived from
+// this software without specific prior written permission.
+//
+// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+// "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+// LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+// A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+// OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#endregion
+using System;
+using System.Collections.Generic;
+using System.Diagnostics;
+using System.IO;
+using System.Reflection;
+using NUnit.Framework;
+
+namespace Google.ProtocolBuffers.ProtoGen
+{
+	[TestFixture]
+	[Category("Preprocessor")]
+	public partial class TestPreprocessing
+	{
+		private static readonly string TEMP = Path.Combine(Path.GetTempPath(), "proto-gen-test");
+		private const string DEFAULT_PROTO = @"
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional string name = 1;
+}";
+
+		#region TestFixture SetUp/TearDown
+		private string OriginalWorkingDirectory = Environment.CurrentDirectory;
+		[TestFixtureSetUp]
+		public virtual void Setup()
+		{
+			Teardown();
+			Directory.CreateDirectory(TEMP);
+			Environment.CurrentDirectory = TEMP;
+		}
+
+		[TestFixtureTearDown]
+		public virtual void Teardown()
+		{
+			Environment.CurrentDirectory = OriginalWorkingDirectory;
+			if (Directory.Exists(TEMP))
+				Directory.Delete(TEMP, true);
+		}
+		#endregion
+		#region Helper Methods RunProtoGen / RunCsc
+		void RunProtoGen(int expect, params string[] args)
+		{
+			TextWriter tout = Console.Out, terr = Console.Error;
+			StringWriter temp = new StringWriter();
+			Console.SetOut(temp);
+			Console.SetError(temp);
+			try
+			{
+				Assert.AreEqual(expect, ProgramPreprocess.Run(args), "ProtoGen Failed: {0}", temp);
+			}
+			finally
+			{
+				Console.SetOut(tout);
+				Console.SetError(terr);
+			}
+		}
+
+		private Assembly RunCsc(int expect, params string[] sources)
+		{
+			using (TempFile tempDll = new TempFile(String.Empty))
+			{
+				tempDll.ChangeExtension(".dll");
+				List<string> args = new List<string>();
+				args.Add("/nologo");
+				args.Add("/target:library");
+				args.Add("/debug-");
+				args.Add(String.Format(@"""/out:{0}""", tempDll.TempPath));
+				args.Add("/r:System.dll");
+				args.Add(String.Format(@"""/r:{0}""", typeof (Google.ProtocolBuffers.DescriptorProtos.DescriptorProto).Assembly.Location));
+				args.AddRange(sources);
+
+				string exe = Path.Combine(System.Runtime.InteropServices.RuntimeEnvironment.GetRuntimeDirectory(), "csc.exe");
+				ProcessStartInfo psi = new ProcessStartInfo(exe);
+				psi.CreateNoWindow = true;
+				psi.UseShellExecute = false;
+				psi.RedirectStandardOutput = true;
+				psi.RedirectStandardError = true;
+				psi.Arguments = string.Join(" ", args.ToArray());
+				Process p = Process.Start(psi);
+				p.WaitForExit();
+				string errorText = p.StandardOutput.ReadToEnd() + p.StandardError.ReadToEnd();
+				Assert.AreEqual(expect, p.ExitCode, "CSC.exe Failed: {0}", errorText);
+
+				Assembly asm = null;
+				if (p.ExitCode == 0)
+				{
+					byte[] allbytes = File.ReadAllBytes(tempDll.TempPath);
+					asm = Assembly.Load(allbytes);
+
+					foreach (Type t in asm.GetTypes())
+						Debug.WriteLine(t.FullName, asm.FullName);
+				}
+				return asm;
+			}
+		}
+		#endregion
+
+		// *******************************************************************
+		// The following tests excercise options for protogen.exe
+		// *******************************************************************
+
+		[Test]
+		public void TestProtoFile()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath);
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithConflictingType()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+package nunit.simple;
+// Test a very simple message.
+message " + test + @" {
+  optional string name = 1;
+} "))
+			{
+				RunProtoGen(0, proto.TempPath);
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple." + test, true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple.Proto." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithNamespace()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "-namespace:MyNewNamespace");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("MyNewNamespace.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("MyNewNamespace." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithUmbrellaClassName()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach("MyUmbrellaClassname.cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "/umbrella_classname=MyUmbrellaClassname");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple.MyUmbrellaClassname", true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithNestedClass()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "-nest_classes:true");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple." + test + "+MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithExpandedNsDirectories()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(@"nunit\simple\" + test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "-expand_namespace_directories:true");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileDisablingClsComplianceFlags()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional uint32 name = 1;
+} "))
+			{
+				//CS3021: Warning as Error: xx does not need a CLSCompliant attribute because the assembly does not have a CLSCompliant attribute
+				RunProtoGen(0, proto.TempPath);
+				RunCsc(1, source.TempPath, "/warnaserror+");
+				//Now we know it fails, make it pass by turning off cls_compliance generation
+				RunProtoGen(0, proto.TempPath, "-cls_compliance:false");
+				Assembly a = RunCsc(0, source.TempPath, "/warnaserror+");
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithNewExtension()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".Generated.cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "-file_extension:.Generated.cs");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithUmbrellaNamespace()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "-umbrella_namespace:MyUmbrella.Namespace");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple.MyUmbrella.Namespace." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithIgnoredUmbrellaNamespaceDueToNesting()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(0, proto.TempPath, "-nest_classes:true", "-umbrella_namespace:MyUmbrella.Namespace");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple." + test + "+MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithExplicitEmptyUmbrellaNamespace()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+package nunit.simple;
+// Test a very simple message.
+message " + test + @" {
+  optional string name = 1;
+} "))
+			{
+				//Forces the umbrella class to not use a namespace even if a collision with a type is detected.
+				RunProtoGen(0, proto.TempPath, "-umbrella_namespace:");
+				//error CS0441: 'nunit.simple.TestProtoFileWithExplicitEmptyUmbrellaNamespace': a class cannot be both static and sealed
+				RunCsc(1, source.TempPath);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithNewOutputFolder()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(@"generated-code\" + test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				RunProtoGen(1, proto.TempPath, "-output_directory:generated-code");
+				Directory.CreateDirectory("generated-code");
+				RunProtoGen(0, proto.TempPath, "-output_directory:generated-code");
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileAndIgnoreGoogleProtobuf()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+import ""google/protobuf/csharp_options.proto"";
+option (google.protobuf.csharp_file_options).namespace = ""MyNewNamespace"";
+" + DEFAULT_PROTO))
+			{
+				string google = Path.Combine(TEMP, "google\\protobuf");
+				Directory.CreateDirectory(google);
+				foreach (string file in Directory.GetFiles(Path.Combine(OriginalWorkingDirectory, "google\\protobuf")))
+					File.Copy(file, Path.Combine(google, Path.GetFileName(file)));
+
+				Assert.AreEqual(0, Directory.GetFiles(TEMP, "*.cs").Length);
+				RunProtoGen(0, proto.TempPath, "-ignore_google_protobuf:true");
+				Assert.AreEqual(1, Directory.GetFiles(TEMP, "*.cs").Length);
+
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("MyNewNamespace.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("MyNewNamespace." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithoutIgnoreGoogleProtobuf()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+import ""google/protobuf/csharp_options.proto"";
+option (google.protobuf.csharp_file_options).namespace = ""MyNewNamespace"";
+" + DEFAULT_PROTO))
+			{
+				string google = Path.Combine(TEMP, "google\\protobuf");
+				Directory.CreateDirectory(google);
+				foreach (string file in Directory.GetFiles(Path.Combine(OriginalWorkingDirectory, "google\\protobuf")))
+					File.Copy(file, Path.Combine(google, Path.GetFileName(file)));
+
+				Assert.AreEqual(0, Directory.GetFiles(TEMP, "*.cs").Length);
+				//Without the option this fails due to being unable to resolve google/protobuf descriptors
+				RunProtoGen(1, proto.TempPath, "-ignore_google_protobuf:false");
+			}
+		}
+
+		// *******************************************************************
+		// The following tests excercise options for protoc.exe
+		// *******************************************************************
+
+		[Test]
+		public void TestProtoFileWithIncludeImports()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+import ""google/protobuf/csharp_options.proto"";
+option (google.protobuf.csharp_file_options).namespace = ""MyNewNamespace"";
+
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional string name = 1;
+} "))
+			{
+				string google = Path.Combine(TEMP, "google\\protobuf");
+				Directory.CreateDirectory(google);
+				foreach (string file in Directory.GetFiles(Path.Combine(OriginalWorkingDirectory, "google\\protobuf")))
+					File.Copy(file, Path.Combine(google, Path.GetFileName(file)));
+
+				Assert.AreEqual(0, Directory.GetFiles(TEMP, "*.cs").Length);
+				//if you specify the protoc option --include_imports this should build three source files
+				RunProtoGen(0, proto.TempPath, "--include_imports");
+				Assert.AreEqual(3, Directory.GetFiles(TEMP, "*.cs").Length);
+
+				//you can (and should) simply omit the inclusion of the extra source files in your project
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("MyNewNamespace.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("MyNewNamespace." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileWithIncludeImportsAndIgnoreGoogleProtobuf()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+import ""google/protobuf/csharp_options.proto"";
+option (google.protobuf.csharp_file_options).namespace = ""MyNewNamespace"";
+
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional string name = 1;
+} "))
+			{
+				string google = Path.Combine(TEMP, "google\\protobuf");
+				Directory.CreateDirectory(google);
+				foreach (string file in Directory.GetFiles(Path.Combine(OriginalWorkingDirectory, "google\\protobuf")))
+					File.Copy(file, Path.Combine(google, Path.GetFileName(file)));
+
+				Assert.AreEqual(0, Directory.GetFiles(TEMP, "*.cs").Length);
+				//Even with --include_imports, if you provide -ignore_google_protobuf:true you only get the one source file
+				RunProtoGen(0, proto.TempPath, "-ignore_google_protobuf:true", "--include_imports");
+				Assert.AreEqual(1, Directory.GetFiles(TEMP, "*.cs").Length);
+
+				//you can (and should) simply omit the inclusion of the extra source files in your project
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("MyNewNamespace.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("MyNewNamespace." + test, true, true);
+			}
+		}
+		[Test]
+		public void TestProtoFileKeepingTheProtoBuffer()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile protobuf = TempFile.Attach(test + ".pb"))
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", @"
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional string name = 1;
+} "))
+			{
+				RunProtoGen(0, proto.TempPath, "--descriptor_set_out=" + protobuf.TempPath);
+				Assert.IsTrue(File.Exists(protobuf.TempPath), "Missing: " + protobuf.TempPath);
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+		//Seems the --proto_path or -I option is non-functional for me.  Maybe others have luck?
+		[Test, Ignore("http://code.google.com/p/protobuf/issues/detail?id=40")]
+		public void TestProtoFileInDifferentDirectory()
+		{
+			string test = new StackFrame(false).GetMethod().Name;
+			Setup();
+			using (TempFile source = TempFile.Attach(test + ".cs"))
+			using (ProtoFile proto = new ProtoFile(test + ".proto", DEFAULT_PROTO))
+			{
+				Environment.CurrentDirectory = OriginalWorkingDirectory;
+				RunProtoGen(0, proto.TempPath, "--proto_path=" + TEMP);
+				Assembly a = RunCsc(0, source.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple." + test, true, true);
+			}
+		}
+
+		// *******************************************************************
+		// Handling of mutliple input files
+		// *******************************************************************
+
+		[Test]
+		public void TestMultipleProtoFiles()
+		{
+			Setup();
+			using (TempFile source1 = TempFile.Attach("MyMessage.cs"))
+			using (ProtoFile proto1 = new ProtoFile("MyMessage.proto", @"
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional string name = 1;
+}"))
+			using (TempFile source2 = TempFile.Attach("MyMessageList.cs"))
+			using (ProtoFile proto2 = new ProtoFile("MyMessageList.proto", @"
+package nunit.simple;
+import ""MyMessage.proto"";
+// Test a very simple message.
+message MyMessageList {
+  repeated MyMessage messages = 1;
+}"))
+			{
+				RunProtoGen(0, proto1.TempPath, proto2.TempPath);
+				Assembly a = RunCsc(0, source1.TempPath, source2.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t1 = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t1), "Expect an IMessage");
+				//assert that the message type is in the expected namespace
+				Type t2 = a.GetType("nunit.simple.MyMessageList", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t2), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple.Proto.MyMessage", true, true);
+				a.GetType("nunit.simple.Proto.MyMessageList", true, true);
+			}
+		}
+		[Test]
+		public void TestOneProtoFileWithBufferFile()
+		{
+			Setup();
+			using (TempFile source1 = TempFile.Attach("MyMessage.cs"))
+			using (TempFile protobuf = TempFile.Attach("MyMessage.pb"))
+			using (ProtoFile proto1 = new ProtoFile("MyMessage.proto", @"
+package nunit.simple;
+// Test a very simple message.
+message MyMessage {
+  optional string name = 1;
+}"))
+			using (TempFile source2 = TempFile.Attach("MyMessageList.cs"))
+			using (ProtoFile proto2 = new ProtoFile("MyMessageList.proto", @"
+package nunit.simple;
+import ""MyMessage.proto"";
+// Test a very simple message.
+message MyMessageList {
+  repeated MyMessage messages = 1;
+}"))
+			{
+				//build the proto buffer for MyMessage
+				RunProtoGen(0, proto1.TempPath, "--descriptor_set_out=" + protobuf.TempPath);
+				//build the MyMessageList proto-buffer and generate code by including MyMessage.pb
+				RunProtoGen(0, proto2.TempPath, protobuf.TempPath);
+				Assembly a = RunCsc(0, source1.TempPath, source2.TempPath);
+				//assert that the message type is in the expected namespace
+				Type t1 = a.GetType("nunit.simple.MyMessage", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t1), "Expect an IMessage");
+				//assert that the message type is in the expected namespace
+				Type t2 = a.GetType("nunit.simple.MyMessageList", true, true);
+				Assert.IsTrue(typeof(IMessage).IsAssignableFrom(t2), "Expect an IMessage");
+				//assert that we can find the static descriptor type
+				a.GetType("nunit.simple.Proto.MyMessage", true, true);
+				a.GetType("nunit.simple.Proto.MyMessageList", true, true);
+			}
+		}
+	}
+}
diff --git a/src/ProtoGen/DescriptorUtil.cs b/src/ProtoGen/DescriptorUtil.cs
index 14d28bb8..f485db6f 100644
--- a/src/ProtoGen/DescriptorUtil.cs
+++ b/src/ProtoGen/DescriptorUtil.cs
@@ -46,10 +46,24 @@ namespace Google.ProtocolBuffers.ProtoGen {
       CSharpFileOptions options = descriptor.File.CSharpOptions;
       string result = options.Namespace;
       if (result != "") result += '.';
-      result += options.UmbrellaClassname;
+	  result += QualifiedUmbrellaClassName(options);
       return "global::" + result;
     }
 
+    /// <summary>
+    /// ROK 2010-09-03
+    /// Evaluates the options and returns the qualified name of the umbrella class
+    /// relative to the descriptor type's namespace.  Basically contacts the
+	/// UmbrellaNamespace + UmbrellaClassname fields.
+    /// </summary>
+	internal static string QualifiedUmbrellaClassName(CSharpFileOptions options)
+	{
+		string fullName = options.UmbrellaClassname;
+		if (!options.NestClasses && options.UmbrellaNamespace != "")
+			fullName = String.Format("{0}.{1}", options.UmbrellaNamespace, options.UmbrellaClassname);
+    	return fullName;
+	}
+
     internal static string GetMappedTypeName(MappedType type) {
       switch(type) {
         case MappedType.Int32:      return "int";
diff --git a/src/ProtoGen/Generator.cs b/src/ProtoGen/Generator.cs
index 7e48ad67..b2d4e23f 100644
--- a/src/ProtoGen/Generator.cs
+++ b/src/ProtoGen/Generator.cs
@@ -60,19 +60,30 @@ namespace Google.ProtocolBuffers.ProtoGen {
     }
 
     public void Generate() {
+		
+	  List<FileDescriptorSet> descriptorProtos = new List<FileDescriptorSet>();
       foreach (string inputFile in options.InputFiles) {
-        FileDescriptorSet descriptorProtos;       
         ExtensionRegistry extensionRegistry = ExtensionRegistry.CreateInstance();
         extensionRegistry.Add(CSharpOptions.CSharpFileOptions);
         extensionRegistry.Add(CSharpOptions.CSharpFieldOptions);
         using (Stream inputStream = File.OpenRead(inputFile)) {
-          descriptorProtos = FileDescriptorSet.ParseFrom(inputStream, extensionRegistry);
+			descriptorProtos.Add(FileDescriptorSet.ParseFrom(inputStream, extensionRegistry));
         }
-        IList<FileDescriptor> descriptors = ConvertDescriptors(descriptorProtos);
+	  }
+      
+		IList<FileDescriptor> descriptors = ConvertDescriptors(options.FileOptions, descriptorProtos.ToArray());
+
+		//ROK Combine with Options...
+		foreach (FileDescriptor descriptor in descriptors)
+			descriptor.ConfigureWithDefaultOptions(options.FileOptions);
 
         foreach (FileDescriptor descriptor in descriptors) {
+			//ROK 2010-09-03 Ignore google protobuf package
+			if(descriptor.CSharpOptions.IgnoreGoogleProtobuf && descriptor.Package == "google.protobuf")
+				continue;
+
           Generate(descriptor);
-        }
+        
       }
     }
 
@@ -90,8 +101,14 @@ namespace Google.ProtocolBuffers.ProtoGen {
 
     private string GetOutputFile(FileDescriptor descriptor) {
       CSharpFileOptions fileOptions = descriptor.CSharpOptions;
-      string filename = descriptor.CSharpOptions.UmbrellaClassname + ".cs";
-      string outputDirectory = options.OutputDirectory;
+
+	  //ROK 2010-09-03 - added the ability to sepcify the extension used within the options
+	  //string filename = descriptor.CSharpOptions.UmbrellaClassname + ".cs";
+	  string filename = descriptor.CSharpOptions.UmbrellaClassname + descriptor.CSharpOptions.FileExtension;
+
+	  //ROK 2010-09-03 - output directory can be specific to a descriptor file
+	  //string outputDirectory = options.OutputDirectory;
+	  string outputDirectory = descriptor.CSharpOptions.OutputDirectory;
       if (fileOptions.ExpandNamespaceDirectories) {
         string package = fileOptions.Namespace;
         if (!string.IsNullOrEmpty(package)) {
@@ -99,22 +116,31 @@ namespace Google.ProtocolBuffers.ProtoGen {
           foreach (string bit in bits) {
             outputDirectory = Path.Combine(outputDirectory, bit);
           }
-          Directory.CreateDirectory(outputDirectory);
         }
-      }
+	  }
+	  //ROK 2010-09-03 - Always force output directory exists since they can specify this in .proto options
+	  Directory.CreateDirectory(outputDirectory);
       return Path.Combine(outputDirectory, filename);
     }
 
+    // ROK 2010-09-03 - used by unit tests, we will continue to allow them to function as-is.
+	internal static IList<FileDescriptor> ConvertDescriptors(FileDescriptorSet descriptorProtos) {
+		return ConvertDescriptors(CSharpFileOptions.DefaultInstance, descriptorProtos);
+    }
+
     /// <summary>
     /// Resolves any dependencies and converts FileDescriptorProtos into FileDescriptors.
     /// The list returned is in the same order as the protos are listed in the descriptor set.
     /// Note: this method is internal rather than private to allow testing.
     /// </summary>
     /// <exception cref="DependencyResolutionException">Not all dependencies could be resolved.</exception>
-    internal static IList<FileDescriptor> ConvertDescriptors(FileDescriptorSet descriptorProtos) {
+    private static IList<FileDescriptor> ConvertDescriptors(CSharpFileOptions options, params FileDescriptorSet[] descriptorProtos) {
       // Simple strategy: Keep going through the list of protos to convert, only doing ones where
       // we've already converted all the dependencies, until we get to a stalemate
-      IList<FileDescriptorProto> fileList = descriptorProtos.FileList;
+      List<FileDescriptorProto> fileList = new List<FileDescriptorProto>();
+	  foreach (FileDescriptorSet set in descriptorProtos)
+	    fileList.AddRange(set.FileList);
+
       FileDescriptor[] converted = new FileDescriptor[fileList.Count];
 
       Dictionary<string, FileDescriptor> convertedMap = new Dictionary<string, FileDescriptor>();
@@ -131,10 +157,32 @@ namespace Google.ProtocolBuffers.ProtoGen {
           }
           FileDescriptorProto candidate = fileList[i];
           FileDescriptor[] dependencies = new FileDescriptor[candidate.DependencyList.Count];
+
+			
+		  CSharpFileOptions.Builder builder = options.ToBuilder();
+		  if (candidate.Options.HasExtension(DescriptorProtos.CSharpOptions.CSharpFileOptions)) {
+			builder.MergeFrom(candidate.Options.GetExtension(DescriptorProtos.CSharpOptions.CSharpFileOptions));
+		  }
+          CSharpFileOptions localOptions = builder.Build();
+
           bool foundAllDependencies = true;
           for (int j = 0; j < dependencies.Length; j++) {
             if (!convertedMap.TryGetValue(candidate.DependencyList[j], out dependencies[j])) {
-              foundAllDependencies = false;
+
+				// ROK 2010-09-03 - we can auto-magically resolve these since we already have their description
+				// This way if the file is only referencing options it does not need to be built with the
+				// --include_imports definition.
+				if (localOptions.IgnoreGoogleProtobuf && (candidate.DependencyList[j] == "google/protobuf/csharp_options.proto"))
+				{
+					dependencies[j] = CSharpOptions.Descriptor;
+					continue;
+				}
+				if (localOptions.IgnoreGoogleProtobuf && (candidate.DependencyList[j] == "google/protobuf/descriptor.proto"))
+				{
+					dependencies[j] = DescriptorProtoFile.Descriptor;
+					continue;
+				}
+            	foundAllDependencies = false;
               break;
             }
           }
diff --git a/src/ProtoGen/GeneratorOptions.cs b/src/ProtoGen/GeneratorOptions.cs
index 1f3d8f2b..53c65a40 100644
--- a/src/ProtoGen/GeneratorOptions.cs
+++ b/src/ProtoGen/GeneratorOptions.cs
@@ -32,8 +32,12 @@
 // OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 #endregion
 
+using System;
 using System.Collections.Generic;
 using System.IO;
+using System.Text.RegularExpressions;
+using Google.ProtocolBuffers.DescriptorProtos;
+using Google.ProtocolBuffers.Descriptors;
 
 namespace Google.ProtocolBuffers.ProtoGen {
 
@@ -44,8 +48,7 @@ namespace Google.ProtocolBuffers.ProtoGen {
   /// the generator.
   /// </summary>
   public sealed class GeneratorOptions {
-
-    public string OutputDirectory { get; set; }
+	//ROK, see below - public string OutputDirectory  { get; set; }
     public IList<string> InputFiles { get; set; }
 
     /// <summary>
@@ -58,12 +61,15 @@ namespace Google.ProtocolBuffers.ProtoGen {
     public bool TryValidate(out IList<string> reasons) {
       List<string> tmpReasons = new List<string>();
 
+	  //ROK 2010-09-03 see population of options below
+	  ParseArguments(tmpReasons);
+
       // Output directory validation
-      if (string.IsNullOrEmpty(OutputDirectory)) {
+      if (string.IsNullOrEmpty(FileOptions.OutputDirectory)) {
         tmpReasons.Add("No output directory specified");
       } else {
-        if (!Directory.Exists(OutputDirectory)) {
-          tmpReasons.Add("Specified output directory (" + OutputDirectory + " doesn't exist.");
+        if (!Directory.Exists(FileOptions.OutputDirectory)) {
+          tmpReasons.Add("Specified output directory (" + FileOptions.OutputDirectory + " doesn't exist.");
         }
       }
 
@@ -99,5 +105,179 @@ namespace Google.ProtocolBuffers.ProtoGen {
         throw new InvalidOptionsException(reasons);
       }
     }
+
+
+
+	// ROK - added to provide defaults for any of the options
+	//Raw arguments
+	public IList<string> Arguments { get; set; }
+	[Obsolete("Please use GeneratorOptions.FileOptions.OutputDirectory instead")]
+  	public string OutputDirectory
+  	{
+  		get {
+			return FileOptions.OutputDirectory;
+  		}
+  		set {
+			CSharpFileOptions.Builder bld = FileOptions.ToBuilder();
+			bld.OutputDirectory = value;
+			FileOptions = bld.Build();
+  		}
+  	}
+
+	private static readonly Regex ArgMatch = new Regex(@"^[-/](?<name>[\w_]+?)[:=](?<value>.*)$");
+	CSharpFileOptions _fileOptions;
+	public CSharpFileOptions FileOptions
+	{
+		get { return _fileOptions ?? (_fileOptions = CSharpFileOptions.DefaultInstance); }
+		set { _fileOptions = value; }
+	}
+
+	private void ParseArguments(IList<string> tmpReasons)
+	{
+		bool doHelp = Arguments.Count == 0;
+
+		//ROK Parse the raw arguments
+		InputFiles = new List<string>();
+		CSharpFileOptions.Builder builder = FileOptions.ToBuilder();
+		Dictionary<string, FieldDescriptor> fields =
+			new Dictionary<string, FieldDescriptor>(StringComparer.OrdinalIgnoreCase);
+		foreach (FieldDescriptor fld in builder.DescriptorForType.Fields)
+			fields.Add(fld.Name, fld);
+
+		foreach (string argument in Arguments)
+		{
+			if (StringComparer.OrdinalIgnoreCase.Equals("-help", argument) ||
+				StringComparer.OrdinalIgnoreCase.Equals("/help", argument) ||
+				StringComparer.OrdinalIgnoreCase.Equals("-?", argument) ||
+				StringComparer.OrdinalIgnoreCase.Equals("/?", argument))
+			{
+				doHelp = true;
+				break;
+			}
+
+			Match m = ArgMatch.Match(argument);
+			if (m.Success)
+			{
+				FieldDescriptor fld;
+				string name = m.Groups["name"].Value;
+				string value = m.Groups["value"].Value;
+
+				if (fields.TryGetValue(name, out fld))
+				{
+					object obj;
+					if (TryCoerceType(value, fld, out obj, tmpReasons))
+						builder[fld] = obj;
+				}
+				else if (!File.Exists(argument))
+				{
+					doHelp = true;
+					tmpReasons.Add("Unknown argument '" + name + "'.");
+				}
+				else
+					InputFiles.Add(argument);
+			}
+			else
+				InputFiles.Add(argument);
+		}
+
+		if (doHelp || InputFiles.Count == 0)
+		{
+			tmpReasons.Add("Arguments:");
+			foreach (KeyValuePair<string, FieldDescriptor> field in fields)
+			{
+				tmpReasons.Add(String.Format("-{0}=[{1}]", field.Key, field.Value.FieldType));
+			}
+			tmpReasons.Add("followed by one or more file paths.");
+		}
+		else
+			FileOptions = builder.Build();
+	}
+
+	private static bool TryCoerceType(string text, FieldDescriptor field, out object value, IList<string> tmpReasons)
+	{
+		value = null;
+
+		switch (field.FieldType)
+		{
+			case FieldType.Int32:
+			case FieldType.SInt32:
+			case FieldType.SFixed32:
+				value = Int32.Parse(text);
+				break;
+
+			case FieldType.Int64:
+			case FieldType.SInt64:
+			case FieldType.SFixed64:
+				value = Int64.Parse(text);
+				break;
+
+			case FieldType.UInt32:
+			case FieldType.Fixed32:
+				value = UInt32.Parse(text);
+				break;
+
+			case FieldType.UInt64:
+			case FieldType.Fixed64:
+				value = UInt64.Parse(text);
+				break;
+
+			case FieldType.Float:
+				value = float.Parse(text);
+				break;
+
+			case FieldType.Double:
+				value = Double.Parse(text);
+				break;
+
+			case FieldType.Bool:
+				value = Boolean.Parse(text);
+				break;
+
+			case FieldType.String:
+				value = text;
+				break;
+
+			case FieldType.Enum:
+				{
+
+					EnumDescriptor enumType = field.EnumType;
+
+					int number;
+					if (int.TryParse(text, out number))
+					{
+						value = enumType.FindValueByNumber(number);
+						if (value == null)
+						{
+							tmpReasons.Add(
+								"Enum type \"" + enumType.FullName +
+								"\" has no value with number " + number + ".");
+							return false;
+						}
+					}
+					else
+					{
+						value = enumType.FindValueByName(text);
+						if (value == null)
+						{
+							tmpReasons.Add(
+								"Enum type \"" + enumType.FullName +
+								"\" has no value named \"" + text + "\".");
+							return false;
+						}
+					}
+
+					break;
+				}
+
+			case FieldType.Bytes:
+			case FieldType.Message:
+			case FieldType.Group:
+				tmpReasons.Add("Unhandled field type " + field.FieldType.ToString() + ".");
+				return false;
+		}
+
+		return true;
+	}
+
   }
 }
diff --git a/src/ProtoGen/Program.cs b/src/ProtoGen/Program.cs
index f9f80f25..a9bc47ce 100644
--- a/src/ProtoGen/Program.cs
+++ b/src/ProtoGen/Program.cs
@@ -41,7 +41,7 @@ namespace Google.ProtocolBuffers.ProtoGen {
   /// Entry point for the Protocol Buffers generator.
   /// </summary>
   class Program {
-    static int Main(string[] args) {
+  	internal static int Main(string[] args) {
       try {
         // Hack to make sure everything's initialized
         DescriptorProtoFile.Descriptor.ToString();
@@ -71,8 +71,11 @@ namespace Google.ProtocolBuffers.ProtoGen {
       //string baseDir = "c:\\Users\\Jon\\Documents\\Visual Studio 2008\\Projects\\ProtocolBuffers";
       //options.OutputDirectory = baseDir + "\\tmp";
       //options.InputFiles = new[] { baseDir + "\\protos\\nwind-solo.protobin" };
-      options.OutputDirectory = ".";
-      options.InputFiles = args;
+
+	  //ROK 2010-09-03 - fixes to allow parsing these options...
+      //options.OutputDirectory = ".";
+	  //options.InputFiles = args;
+      options.Arguments = args;
       return options;
     }
   }
diff --git a/src/ProtoGen/ProgramPreprocess.cs b/src/ProtoGen/ProgramPreprocess.cs
new file mode 100644
index 00000000..2081b016
--- /dev/null
+++ b/src/ProtoGen/ProgramPreprocess.cs
@@ -0,0 +1,150 @@
+using System;
+using System.Collections.Generic;
+using System.Diagnostics;
+using System.IO;
+
+namespace Google.ProtocolBuffers.ProtoGen
+{
+	/// <summary>
+	/// Preprocesses any input files with an extension of '.proto' by running protoc.exe.  If arguments
+	/// are supplied with '--' prefix they are provided to protoc.exe, otherwise they are assumed to
+	/// be used for ProtoGen.exe which is run on the resulting output proto buffer.  If the option
+	/// --descriptor_set_out= is specified the proto buffer file is kept, otherwise it will be removed
+	/// after code generation.
+	/// </summary>
+    internal class ProgramPreprocess
+    {
+        static int Main(string[] args)
+        {
+            try
+			{
+				return Environment.ExitCode = Run(args);
+			}
+			catch (Exception ex)
+			{
+				Console.Error.WriteLine(ex);
+				return Environment.ExitCode = 2;
+			}
+        }
+		
+		internal static int Run(params string[] args)
+		{
+			bool deleteFile = false;
+            string tempFile = null;
+            int result = 1;
+        	bool doHelp = args.Length == 0;
+            try
+            {
+                List<string> protocArgs = new List<string>();
+                List<string> protoGenArgs = new List<string>();
+
+                foreach (string arg in args)
+				{
+					doHelp |= StringComparer.OrdinalIgnoreCase.Equals(arg, "/?");
+					doHelp |= StringComparer.OrdinalIgnoreCase.Equals(arg, "/help");
+					doHelp |= StringComparer.OrdinalIgnoreCase.Equals(arg, "-?");
+					doHelp |= StringComparer.OrdinalIgnoreCase.Equals(arg, "-help");
+
+                    if(arg.StartsWith("--descriptor_set_out="))
+                    {
+                        tempFile = arg.Substring("--descriptor_set_out=".Length);
+                        protoGenArgs.Add(tempFile);
+                    }
+                }
+
+				if (doHelp)
+				{
+					Console.WriteLine();
+					Console.WriteLine("PROTOC.exe: Use any of the following options that begin with '--':");
+					Console.WriteLine();
+					try { RunProtoc("--help"); }
+					catch (Exception ex) { Console.Error.WriteLine(ex.Message); }
+					Console.WriteLine();
+					Console.WriteLine();
+					Console.WriteLine("PRTOGEN.exe: The following options are used to specify defaults for code generation.");
+					Console.WriteLine();
+					Program.Main(new string[0]);
+					return 0;
+				}
+
+				foreach (string arg in args)
+				{
+					if (arg.StartsWith("--"))
+						protocArgs.Add(arg);
+					else if (File.Exists(arg) && StringComparer.OrdinalIgnoreCase.Equals(".proto", Path.GetExtension(arg)))
+					{
+						if (tempFile == null)
+						{
+							deleteFile = true;
+							tempFile = Path.GetTempFileName();
+							protocArgs.Add(String.Format("--descriptor_set_out={0}", tempFile));
+							protoGenArgs.Add(tempFile);
+						}
+						protocArgs.Add(arg);
+					}
+					else
+						protoGenArgs.Add(arg);
+				}
+
+            	if (tempFile != null)
+                {
+                    result = RunProtoc(protocArgs.ToArray());
+                    if (result != 0)
+                        return result;
+                }
+
+                result = Program.Main(protoGenArgs.ToArray());
+            }
+            finally
+            {
+                if (deleteFile && tempFile != null && File.Exists(tempFile))
+                    File.Delete(tempFile);
+            }
+            return result;
+        }
+
+        private static int RunProtoc(params string[] args)
+        {
+            const string protoc = "protoc.exe";
+            string exePath = protoc;
+
+            //why oh why is this not in System.IO.Path or Environment...
+            List<string> searchPath = new List<string>();
+            searchPath.Add(Environment.CurrentDirectory);
+            searchPath.Add(AppDomain.CurrentDomain.BaseDirectory);
+            searchPath.AddRange((Environment.GetEnvironmentVariable("PATH") ?? String.Empty).Split(Path.PathSeparator));
+
+            foreach (string path in searchPath)
+                if (File.Exists(exePath = Path.Combine(path, protoc)))
+                    break;
+
+            if (!File.Exists(exePath))
+                throw new FileNotFoundException("Unable to locate " + protoc + " make sure it is in the PATH, cwd, or exe dir.");
+
+            for (int i = 0; i < args.Length; i++)
+                if (args[i].IndexOf(' ') > 0 && args[i][0] != '"')
+                    args[i] = '"' + args[i] + '"';
+
+            ProcessStartInfo psi = new ProcessStartInfo(exePath);
+            psi.Arguments = String.Join(" ", args);
+            psi.RedirectStandardError = true;
+            psi.RedirectStandardInput = false;
+            psi.RedirectStandardOutput = true;
+            psi.ErrorDialog = false;
+            psi.CreateNoWindow = true;
+            psi.UseShellExecute = false;
+            psi.WorkingDirectory = Environment.CurrentDirectory;
+
+            Process process = Process.Start(psi);
+            if (process == null) return 1;
+
+            process.WaitForExit();
+
+        	string tmp = process.StandardOutput.ReadToEnd();
+			if(tmp.Trim().Length > 0) Console.Out.WriteLine(tmp);
+			tmp = process.StandardError.ReadToEnd();
+			if (tmp.Trim().Length > 0) Console.Error.WriteLine(tmp);
+            return process.ExitCode;
+        }
+    }
+}
diff --git a/src/ProtoGen/ProtoGen.csproj b/src/ProtoGen/ProtoGen.csproj
index 056b2c36..03b81ba5 100644
--- a/src/ProtoGen/ProtoGen.csproj
+++ b/src/ProtoGen/ProtoGen.csproj
@@ -16,6 +16,7 @@
     </TargetFrameworkSubset>
     <SignAssembly>true</SignAssembly>
     <AssemblyOriginatorKeyFile>Properties\Google.ProtocolBuffers.ProtoGen.snk</AssemblyOriginatorKeyFile>
+    <StartupObject>Google.ProtocolBuffers.ProtoGen.ProgramPreprocess</StartupObject>
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|AnyCPU' ">
     <DebugSymbols>true</DebugSymbols>
@@ -58,6 +59,7 @@
     <Compile Include="MessageFieldGenerator.cs" />
     <Compile Include="MessageGenerator.cs" />
     <Compile Include="PrimitiveFieldGenerator.cs" />
+    <Compile Include="ProgramPreprocess.cs" />
     <Compile Include="RepeatedEnumFieldGenerator.cs" />
     <Compile Include="RepeatedMessageFieldGenerator.cs" />
     <Compile Include="RepeatedPrimitiveFieldGenerator.cs" />
diff --git a/src/ProtoGen/ServiceGenerator.cs b/src/ProtoGen/ServiceGenerator.cs
index a7a4471e..83d8a6a3 100644
--- a/src/ProtoGen/ServiceGenerator.cs
+++ b/src/ProtoGen/ServiceGenerator.cs
@@ -61,7 +61,7 @@ namespace Google.ProtocolBuffers.ProtoGen {
       writer.WriteLine();
       writer.WriteLine("{0} static pbd::ServiceDescriptor Descriptor {{", ClassAccessLevel);
       writer.WriteLine("  get {{ return {0}.Descriptor.Services[{1}]; }}",
-        Descriptor.File.CSharpOptions.UmbrellaClassname, Descriptor.Index);
+        DescriptorUtil.QualifiedUmbrellaClassName(Descriptor.File.CSharpOptions), Descriptor.Index);
       writer.WriteLine("}");
       writer.WriteLine("{0} pbd::ServiceDescriptor DescriptorForType {{", ClassAccessLevel);
       writer.WriteLine("  get { return Descriptor; }");
diff --git a/src/ProtoGen/UmbrellaClassGenerator.cs b/src/ProtoGen/UmbrellaClassGenerator.cs
index 9dcbcab9..d596f1a1 100644
--- a/src/ProtoGen/UmbrellaClassGenerator.cs
+++ b/src/ProtoGen/UmbrellaClassGenerator.cs
@@ -92,7 +92,13 @@ namespace Google.ProtocolBuffers.ProtoGen {
       if (!Descriptor.CSharpOptions.NestClasses) {
         writer.Outdent();
         writer.WriteLine("}");
-      }
+
+		//ROK 2010-09-03 - close the namespace around the umbrella class if defined
+		if (!Descriptor.CSharpOptions.NestClasses && Descriptor.CSharpOptions.UmbrellaNamespace != "") {
+			writer.Outdent();
+			writer.WriteLine("}");
+		}
+	  }
       WriteChildren(writer, "Enums", Descriptor.EnumTypes);
       WriteChildren(writer, "Messages", Descriptor.MessageTypes);
       WriteChildren(writer, "Services", Descriptor.Services);
@@ -115,7 +121,14 @@ namespace Google.ProtocolBuffers.ProtoGen {
         writer.WriteLine("namespace {0} {{", Descriptor.CSharpOptions.Namespace);
         writer.Indent();
         writer.WriteLine();
-      }    
+      }
+	  //ROK 2010-09-03 - add the namespace around the umbrella class if defined
+	  if(!Descriptor.CSharpOptions.NestClasses && Descriptor.CSharpOptions.UmbrellaNamespace != "") {
+        writer.WriteLine("namespace {0} {{", Descriptor.CSharpOptions.UmbrellaNamespace);
+        writer.Indent();
+        writer.WriteLine();
+	  }
+    
       if (Descriptor.CSharpOptions.CodeContracts) {
           writer.WriteLine("[global::System.Diagnostics.Contracts.ContractVerificationAttribute(false)]");
       }
diff --git a/src/ProtocolBuffers.sln b/src/ProtocolBuffers.sln
index a9655bba..3ad5dc25 100644
--- a/src/ProtocolBuffers.sln
+++ b/src/ProtocolBuffers.sln
@@ -17,6 +17,14 @@ Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "ProtoBench", "ProtoBench\Pr
 EndProject
 Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "ProtoDump", "ProtoDump\ProtoDump.csproj", "{D7282E99-2DC3-405B-946F-177DB2FD2AE2}"
 EndProject
+Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "proto", "proto", "{1F896D5C-5FC2-4671-9216-781CB8187EC7}"
+	ProjectSection(SolutionItems) = preProject
+		..\protos\tutorial\addressbook.proto = ..\protos\tutorial\addressbook.proto
+		..\protos\google\protobuf\csharp_options.proto = ..\protos\google\protobuf\csharp_options.proto
+		..\protos\google\protobuf\descriptor.proto = ..\protos\google\protobuf\descriptor.proto
+		..\todo.txt = ..\todo.txt
+	EndProjectSection
+EndProject
 Global
 	GlobalSection(SolutionConfigurationPlatforms) = preSolution
 		Debug|Any CPU = Debug|Any CPU
diff --git a/src/ProtocolBuffers/DescriptorProtos/CSharpOptions.cs b/src/ProtocolBuffers/DescriptorProtos/CSharpOptions.cs
index 313c855e..ae13b5ac 100644
--- a/src/ProtocolBuffers/DescriptorProtos/CSharpOptions.cs
+++ b/src/ProtocolBuffers/DescriptorProtos/CSharpOptions.cs
@@ -37,23 +37,26 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
       byte[] descriptorData = global::System.Convert.FromBase64String(
           "CiRnb29nbGUvcHJvdG9idWYvY3NoYXJwX29wdGlvbnMucHJvdG8SD2dvb2ds" + 
           "ZS5wcm90b2J1ZhogZ29vZ2xlL3Byb3RvYnVmL2Rlc2NyaXB0b3IucHJvdG8i" + 
-          "6gEKEUNTaGFycEZpbGVPcHRpb25zEhEKCW5hbWVzcGFjZRgBIAEoCRIaChJ1" + 
+          "6wIKEUNTaGFycEZpbGVPcHRpb25zEhEKCW5hbWVzcGFjZRgBIAEoCRIaChJ1" + 
           "bWJyZWxsYV9jbGFzc25hbWUYAiABKAkSHAoOcHVibGljX2NsYXNzZXMYAyAB" + 
           "KAg6BHRydWUSFgoObXVsdGlwbGVfZmlsZXMYBCABKAgSFAoMbmVzdF9jbGFz" + 
           "c2VzGAUgASgIEhYKDmNvZGVfY29udHJhY3RzGAYgASgIEiQKHGV4cGFuZF9u" + 
           "YW1lc3BhY2VfZGlyZWN0b3JpZXMYByABKAgSHAoOY2xzX2NvbXBsaWFuY2UY" + 
-          "CCABKAg6BHRydWUiKwoSQ1NoYXJwRmllbGRPcHRpb25zEhUKDXByb3BlcnR5" + 
-          "X25hbWUYASABKAk6XgoTY3NoYXJwX2ZpbGVfb3B0aW9ucxIcLmdvb2dsZS5w" + 
-          "cm90b2J1Zi5GaWxlT3B0aW9ucxjoByABKAsyIi5nb29nbGUucHJvdG9idWYu" + 
-          "Q1NoYXJwRmlsZU9wdGlvbnM6YQoUY3NoYXJwX2ZpZWxkX29wdGlvbnMSHS5n" + 
-          "b29nbGUucHJvdG9idWYuRmllbGRPcHRpb25zGOgHIAEoCzIjLmdvb2dsZS5w" + 
-          "cm90b2J1Zi5DU2hhcnBGaWVsZE9wdGlvbnM=");
+          "CCABKAg6BHRydWUSHAoOZmlsZV9leHRlbnNpb24Y3QEgASgJOgMuY3MSGwoS" + 
+          "dW1icmVsbGFfbmFtZXNwYWNlGN4BIAEoCRIcChBvdXRwdXRfZGlyZWN0b3J5" + 
+          "GN8BIAEoCToBLhImChZpZ25vcmVfZ29vZ2xlX3Byb3RvYnVmGOABIAEoCDoF" + 
+          "ZmFsc2UiKwoSQ1NoYXJwRmllbGRPcHRpb25zEhUKDXByb3BlcnR5X25hbWUY" + 
+          "ASABKAk6XgoTY3NoYXJwX2ZpbGVfb3B0aW9ucxIcLmdvb2dsZS5wcm90b2J1" + 
+          "Zi5GaWxlT3B0aW9ucxjoByABKAsyIi5nb29nbGUucHJvdG9idWYuQ1NoYXJw" + 
+          "RmlsZU9wdGlvbnM6YQoUY3NoYXJwX2ZpZWxkX29wdGlvbnMSHS5nb29nbGUu" + 
+          "cHJvdG9idWYuRmllbGRPcHRpb25zGOgHIAEoCzIjLmdvb2dsZS5wcm90b2J1" + 
+          "Zi5DU2hhcnBGaWVsZE9wdGlvbnM=");
       pbd::FileDescriptor.InternalDescriptorAssigner assigner = delegate(pbd::FileDescriptor root) {
         descriptor = root;
         internal__static_google_protobuf_CSharpFileOptions__Descriptor = Descriptor.MessageTypes[0];
         internal__static_google_protobuf_CSharpFileOptions__FieldAccessorTable = 
             new pb::FieldAccess.FieldAccessorTable<global::Google.ProtocolBuffers.DescriptorProtos.CSharpFileOptions, global::Google.ProtocolBuffers.DescriptorProtos.CSharpFileOptions.Builder>(internal__static_google_protobuf_CSharpFileOptions__Descriptor,
-                new string[] { "Namespace", "UmbrellaClassname", "PublicClasses", "MultipleFiles", "NestClasses", "CodeContracts", "ExpandNamespaceDirectories", "ClsCompliance", });
+                new string[] { "Namespace", "UmbrellaClassname", "PublicClasses", "MultipleFiles", "NestClasses", "CodeContracts", "ExpandNamespaceDirectories", "ClsCompliance", "FileExtension", "UmbrellaNamespace", "OutputDirectory", "IgnoreGoogleProtobuf", });
         internal__static_google_protobuf_CSharpFieldOptions__Descriptor = Descriptor.MessageTypes[1];
         internal__static_google_protobuf_CSharpFieldOptions__FieldAccessorTable = 
             new pb::FieldAccess.FieldAccessorTable<global::Google.ProtocolBuffers.DescriptorProtos.CSharpFieldOptions, global::Google.ProtocolBuffers.DescriptorProtos.CSharpFieldOptions.Builder>(internal__static_google_protobuf_CSharpFieldOptions__Descriptor,
@@ -173,6 +176,46 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
       get { return clsCompliance_; }
     }
     
+    public const int FileExtensionFieldNumber = 221;
+    private bool hasFileExtension;
+    private string fileExtension_ = ".cs";
+    public bool HasFileExtension {
+      get { return hasFileExtension; }
+    }
+    public string FileExtension {
+      get { return fileExtension_; }
+    }
+    
+    public const int UmbrellaNamespaceFieldNumber = 222;
+    private bool hasUmbrellaNamespace;
+    private string umbrellaNamespace_ = "";
+    public bool HasUmbrellaNamespace {
+      get { return hasUmbrellaNamespace; }
+    }
+    public string UmbrellaNamespace {
+      get { return umbrellaNamespace_; }
+    }
+    
+    public const int OutputDirectoryFieldNumber = 223;
+    private bool hasOutputDirectory;
+    private string outputDirectory_ = ".";
+    public bool HasOutputDirectory {
+      get { return hasOutputDirectory; }
+    }
+    public string OutputDirectory {
+      get { return outputDirectory_; }
+    }
+    
+    public const int IgnoreGoogleProtobufFieldNumber = 224;
+    private bool hasIgnoreGoogleProtobuf;
+    private bool ignoreGoogleProtobuf_ = false;
+    public bool HasIgnoreGoogleProtobuf {
+      get { return hasIgnoreGoogleProtobuf; }
+    }
+    public bool IgnoreGoogleProtobuf {
+      get { return ignoreGoogleProtobuf_; }
+    }
+    
     public override bool IsInitialized {
       get {
         return true;
@@ -205,6 +248,18 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
       if (HasClsCompliance) {
         output.WriteBool(8, ClsCompliance);
       }
+      if (HasFileExtension) {
+        output.WriteString(221, FileExtension);
+      }
+      if (HasUmbrellaNamespace) {
+        output.WriteString(222, UmbrellaNamespace);
+      }
+      if (HasOutputDirectory) {
+        output.WriteString(223, OutputDirectory);
+      }
+      if (HasIgnoreGoogleProtobuf) {
+        output.WriteBool(224, IgnoreGoogleProtobuf);
+      }
       UnknownFields.WriteTo(output);
     }
     
@@ -239,6 +294,18 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
         if (HasClsCompliance) {
           size += pb::CodedOutputStream.ComputeBoolSize(8, ClsCompliance);
         }
+        if (HasFileExtension) {
+          size += pb::CodedOutputStream.ComputeStringSize(221, FileExtension);
+        }
+        if (HasUmbrellaNamespace) {
+          size += pb::CodedOutputStream.ComputeStringSize(222, UmbrellaNamespace);
+        }
+        if (HasOutputDirectory) {
+          size += pb::CodedOutputStream.ComputeStringSize(223, OutputDirectory);
+        }
+        if (HasIgnoreGoogleProtobuf) {
+          size += pb::CodedOutputStream.ComputeBoolSize(224, IgnoreGoogleProtobuf);
+        }
         size += UnknownFields.SerializedSize;
         memoizedSerializedSize = size;
         return size;
@@ -355,6 +422,18 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
         if (other.HasClsCompliance) {
           ClsCompliance = other.ClsCompliance;
         }
+        if (other.HasFileExtension) {
+          FileExtension = other.FileExtension;
+        }
+        if (other.HasUmbrellaNamespace) {
+          UmbrellaNamespace = other.UmbrellaNamespace;
+        }
+        if (other.HasOutputDirectory) {
+          OutputDirectory = other.OutputDirectory;
+        }
+        if (other.HasIgnoreGoogleProtobuf) {
+          IgnoreGoogleProtobuf = other.IgnoreGoogleProtobuf;
+        }
         this.MergeUnknownFields(other.UnknownFields);
         return this;
       }
@@ -419,6 +498,22 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
               ClsCompliance = input.ReadBool();
               break;
             }
+            case 1770: {
+              FileExtension = input.ReadString();
+              break;
+            }
+            case 1778: {
+              UmbrellaNamespace = input.ReadString();
+              break;
+            }
+            case 1786: {
+              OutputDirectory = input.ReadString();
+              break;
+            }
+            case 1792: {
+              IgnoreGoogleProtobuf = input.ReadBool();
+              break;
+            }
           }
         }
       }
@@ -569,6 +664,81 @@ namespace Google.ProtocolBuffers.DescriptorProtos {
         result.clsCompliance_ = true;
         return this;
       }
+      
+      public bool HasFileExtension {
+        get { return result.HasFileExtension; }
+      }
+      public string FileExtension {
+        get { return result.FileExtension; }
+        set { SetFileExtension(value); }
+      }
+      public Builder SetFileExtension(string value) {
+        pb::ThrowHelper.ThrowIfNull(value, "value");
+        result.hasFileExtension = true;
+        result.fileExtension_ = value;
+        return this;
+      }
+      public Builder ClearFileExtension() {
+        result.hasFileExtension = false;
+        result.fileExtension_ = ".cs";
+        return this;
+      }
+      
+      public bool HasUmbrellaNamespace {
+        get { return result.HasUmbrellaNamespace; }
+      }
+      public string UmbrellaNamespace {
+        get { return result.UmbrellaNamespace; }
+        set { SetUmbrellaNamespace(value); }
+      }
+      public Builder SetUmbrellaNamespace(string value) {
+        pb::ThrowHelper.ThrowIfNull(value, "value");
+        result.hasUmbrellaNamespace = true;
+        result.umbrellaNamespace_ = value;
+        return this;
+      }
+      public Builder ClearUmbrellaNamespace() {
+        result.hasUmbrellaNamespace = false;
+        result.umbrellaNamespace_ = "";
+        return this;
+      }
+      
+      public bool HasOutputDirectory {
+        get { return result.HasOutputDirectory; }
+      }
+      public string OutputDirectory {
+        get { return result.OutputDirectory; }
+        set { SetOutputDirectory(value); }
+      }
+      public Builder SetOutputDirectory(string value) {
+        pb::ThrowHelper.ThrowIfNull(value, "value");
+        result.hasOutputDirectory = true;
+        result.outputDirectory_ = value;
+        return this;
+      }
+      public Builder ClearOutputDirectory() {
+        result.hasOutputDirectory = false;
+        result.outputDirectory_ = ".";
+        return this;
+      }
+      
+      public bool HasIgnoreGoogleProtobuf {
+        get { return result.HasIgnoreGoogleProtobuf; }
+      }
+      public bool IgnoreGoogleProtobuf {
+        get { return result.IgnoreGoogleProtobuf; }
+        set { SetIgnoreGoogleProtobuf(value); }
+      }
+      public Builder SetIgnoreGoogleProtobuf(bool value) {
+        result.hasIgnoreGoogleProtobuf = true;
+        result.ignoreGoogleProtobuf_ = value;
+        return this;
+      }
+      public Builder ClearIgnoreGoogleProtobuf() {
+        result.hasIgnoreGoogleProtobuf = false;
+        result.ignoreGoogleProtobuf_ = false;
+        return this;
+      }
     }
     static CSharpFileOptions() {
       object.ReferenceEquals(global::Google.ProtocolBuffers.DescriptorProtos.CSharpOptions.Descriptor, null);
diff --git a/src/ProtocolBuffers/Descriptors/FileDescriptor.cs b/src/ProtocolBuffers/Descriptors/FileDescriptor.cs
index 4d7b54e0..be4a054f 100644
--- a/src/ProtocolBuffers/Descriptors/FileDescriptor.cs
+++ b/src/ProtocolBuffers/Descriptors/FileDescriptor.cs
@@ -73,21 +73,36 @@ namespace Google.ProtocolBuffers.Descriptors {
         (field, index) => new FieldDescriptor(field, this, null, index, true));
     }
 
-    private CSharpFileOptions BuildOrFakeCSharpOptions() {
-      // TODO(jonskeet): Check if we could use FileDescriptorProto.Descriptor.Name - interesting bootstrap issues
-      if (proto.Name == "google/protobuf/descriptor.proto") {
-        return new CSharpFileOptions.Builder {
-          Namespace = "Google.ProtocolBuffers.DescriptorProtos",
-          UmbrellaClassname = "DescriptorProtoFile", NestClasses = false, MultipleFiles = false, PublicClasses = true
-        }.Build();
-      }
-      if (proto.Name == "google/protobuf/csharp_options.proto") {
-        return new CSharpFileOptions.Builder {
-          Namespace = "Google.ProtocolBuffers.DescriptorProtos",
-          UmbrellaClassname = "CSharpOptions", NestClasses = false, MultipleFiles = false, PublicClasses = true
-        }.Build();
-      }
-      CSharpFileOptions.Builder builder = CSharpFileOptions.CreateBuilder();
+
+	/// <summary>
+	/// ROK - Added to allow the GeneratorOptions to sepcify the default for any or all of these values
+	/// </summary>
+	internal void ConfigureWithDefaultOptions(CSharpFileOptions options)
+	{
+		csharpFileOptions = BuildOrFakeWithDefaultOptions(options);
+	}
+	private CSharpFileOptions BuildOrFakeWithDefaultOptions(CSharpFileOptions defaultOptions)
+	{
+	  // ROK 2010-09-03 - fix for being able to relocate these files to any directory structure
+	  if(proto.Package == "google.protobuf") {
+	  	string filename = System.IO.Path.GetFileName(proto.Name);
+		// TODO(jonskeet): Check if we could use FileDescriptorProto.Descriptor.Name - interesting bootstrap issues)
+		if (filename == "descriptor.proto") {
+			return new CSharpFileOptions.Builder {
+			  Namespace = "Google.ProtocolBuffers.DescriptorProtos",
+			  UmbrellaClassname = "DescriptorProtoFile", NestClasses = false, MultipleFiles = false, PublicClasses = true,
+			  OutputDirectory = defaultOptions.OutputDirectory, IgnoreGoogleProtobuf = defaultOptions.IgnoreGoogleProtobuf
+			}.Build();
+		}
+		if (filename == "csharp_options.proto") {
+			return new CSharpFileOptions.Builder {
+			  Namespace = "Google.ProtocolBuffers.DescriptorProtos",
+			  UmbrellaClassname = "CSharpOptions", NestClasses = false, MultipleFiles = false, PublicClasses = true,
+			  OutputDirectory = defaultOptions.OutputDirectory, IgnoreGoogleProtobuf = defaultOptions.IgnoreGoogleProtobuf
+			}.Build();
+		}
+	  }
+	  CSharpFileOptions.Builder builder = defaultOptions.ToBuilder();
       if (proto.Options.HasExtension(DescriptorProtos.CSharpOptions.CSharpFileOptions)) {
         builder.MergeFrom(proto.Options.GetExtension(DescriptorProtos.CSharpOptions.CSharpFileOptions));
       }
@@ -99,6 +114,21 @@ namespace Google.ProtocolBuffers.Descriptors {
         string baseName = Name.Substring(lastSlash + 1);
         builder.UmbrellaClassname = NameHelpers.UnderscoresToPascalCase(NameHelpers.StripProto(baseName));        
       }
+
+	  // ROK 2010-09-03 - auto fix for name collision by placing umbrella class into a new namespace.  This
+	  // still won't fix the collisions with nesting enabled; however, you have to turn that on so whatever.
+	  if(!builder.NestClasses && !builder.HasUmbrellaNamespace) {
+		  bool collision = false;
+		  foreach (IDescriptor d in MessageTypes)
+			  collision |= d.Name == builder.UmbrellaClassname;
+		  foreach (IDescriptor d in Services)
+			  collision |= d.Name == builder.UmbrellaClassname;
+		  foreach (IDescriptor d in EnumTypes)
+			  collision |= d.Name == builder.UmbrellaClassname;
+		  if (collision)
+			  builder.UmbrellaNamespace = "Proto";
+	  }
+
       return builder.Build();
     }
 
@@ -124,7 +154,7 @@ namespace Google.ProtocolBuffers.Descriptors {
       get {
         lock (optionsLock) {
           if (csharpFileOptions == null) {
-            csharpFileOptions = BuildOrFakeCSharpOptions();
+            csharpFileOptions = BuildOrFakeWithDefaultOptions(CSharpFileOptions.DefaultInstance);
           }
         }
         return csharpFileOptions;
diff --git a/todo.txt b/todo.txt
index 498e5ca9..93889611 100644
--- a/todo.txt
+++ b/todo.txt
@@ -1,10 +1,49 @@
+Work complete on csharptest/branch
+
+New Options (in csharp_options.proto):
+
+1 - Add a way to specify the output directory
+    Added an option to csharp_options.proto called "output_directory", defaults to "."
+
+2 - Added an option "file_extension" to control the suffix for cs files generated, defaults to ".cs"
+    This enables using ".Generated.cs" to provide easy filtering and cleanup of generated code.
+
+3 - Added the option for "umbrella_namespace" used when nest_classes=false and having name conflicts
+
+4 - Optionally remove dependencies to csharp options
+    provided option "ignore_google_protobuf" to prevent generation of code for csharp_options.proto and descriptor.proto
+    option also relaxes the contraint of having either of these compiled into the proto buffer input
+
+5 - Investigate command line parsing library
+    All proto options for csharp_options.proto can now be provided via the command-line by using the following format:
+      /option=value or -option:value
+      i.e. use /namespace=My.Name.Space
+
+6 - Investigate calling protoc directly
+    ProgramPreprocess.cs - input files with an extension of '.proto' by running protoc.exe.  If arguments
+    are supplied with '--' prefix they are provided to protoc.exe, otherwise they are assumed to
+    be used for ProtoGen.exe which is run on the resulting output proto buffer.  If the option
+    --descriptor_set_out= is specified the proto buffer file is kept, otherwise it will be removed
+    after code generation.
+
+7 - Unable to resolve dependencies correctly
+    Fixed an issue where two or more proto-buffers are provided to protogen.exe that depend on types
+    defined in one-another.  The dependency walker of the generator was not taking into account all
+    inputs when evaluating the descriptor's existence.
+
+8 - Added several (20) nunits to automate the command-line invocation of each option and ensured the
+    generated code compiles into a working assembly and contains some of the expected types.  Not sure
+    how to disable this test for mono, I'm certain it will not work; however, I still believe it's worth
+    having.  As a side-benefit from testing the command-line options, it verifies behavior of each
+    setting in csharp_options (save for multi-file).
+
 Current task list (not in order)
 
-- Optionally remove dependencies to csharp options
+? Optionally remove dependencies to csharp options
 - Remove multifile support
 - Docs
 - Clean up protogen code
-- Add flags to protogen
+X Add flags to protogen
 - Avoid using reflection for messages which don't need it (is this
   possible?)
 - Bring service generation into line with Java
@@ -14,7 +53,7 @@ Current task list (not in order)
 - Reformat code
 - Change generated format
 - Add regions to copyright
-- Investigate command line parsing library
-- Investigate calling protoc directly
+X Investigate command line parsing library
+X Investigate calling protoc directly
 - Build and publish binaries
 - Work out why the Compact Framework 3.5 build fails under VS2010