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authorMatei Zaharia <matei@eecs.berkeley.edu>2011-02-27 19:15:52 -0800
committerMatei Zaharia <matei@eecs.berkeley.edu>2011-02-27 19:15:52 -0800
commit9e59afd71082c709aa0f4f4a95ec1de982179aee (patch)
tree7557f01901372c6ffaf837a2c99638faae5fe098
parentf38f86d59e48d348b93a7b557bbbc43638638b6a (diff)
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More work on new RDD design
-rw-r--r--core/src/main/scala/spark/Aggregator.scala8
-rw-r--r--core/src/main/scala/spark/CartesianRDD.scala44
-rw-r--r--core/src/main/scala/spark/Dependency.scala30
-rw-r--r--core/src/main/scala/spark/Executor.scala2
-rw-r--r--core/src/main/scala/spark/HadoopFile.scala16
-rw-r--r--core/src/main/scala/spark/MapOutputTracker.scala27
-rw-r--r--core/src/main/scala/spark/ParallelArray.scala9
-rw-r--r--core/src/main/scala/spark/Partitioner.scala22
-rw-r--r--core/src/main/scala/spark/RDD.scala377
-rw-r--r--core/src/main/scala/spark/RDDCache.scala92
-rw-r--r--core/src/main/scala/spark/SampledRDD.scala36
-rw-r--r--core/src/main/scala/spark/ShuffledRDD.scala60
-rw-r--r--core/src/main/scala/spark/SparkContext.scala21
-rw-r--r--core/src/main/scala/spark/Split.scala9
-rw-r--r--core/src/main/scala/spark/UnionRDD.scala43
-rw-r--r--core/src/main/scala/spark/Utils.scala7
16 files changed, 476 insertions, 327 deletions
diff --git a/core/src/main/scala/spark/Aggregator.scala b/core/src/main/scala/spark/Aggregator.scala
new file mode 100644
index 0000000000..87453c9c15
--- /dev/null
+++ b/core/src/main/scala/spark/Aggregator.scala
@@ -0,0 +1,8 @@
+package spark
+
+@serializable
+class Aggregator[K, V, C] (
+ val createCombiner: V => C,
+ val mergeValue: (C, V) => C,
+ val mergeCombiners: (C, C) => C
+) \ No newline at end of file
diff --git a/core/src/main/scala/spark/CartesianRDD.scala b/core/src/main/scala/spark/CartesianRDD.scala
new file mode 100644
index 0000000000..42a9b3b23c
--- /dev/null
+++ b/core/src/main/scala/spark/CartesianRDD.scala
@@ -0,0 +1,44 @@
+package spark
+
+@serializable class CartesianSplit(idx: Int, val s1: Split, val s2: Split)
+extends Split {
+ override val index = idx
+}
+
+@serializable
+class CartesianRDD[T: ClassManifest, U:ClassManifest](
+ sc: SparkContext, rdd1: RDD[T], rdd2: RDD[U])
+extends RDD[Pair[T, U]](sc) {
+ val numSplitsInRdd2 = rdd2.splits.size
+
+ @transient val splits_ = {
+ // create the cross product split
+ val array = new Array[Split](rdd1.splits.size * rdd2.splits.size)
+ for (s1 <- rdd1.splits; s2 <- rdd2.splits) {
+ val idx = s1.index * numSplitsInRdd2 + s2.index
+ array(idx) = new CartesianSplit(idx, s1, s2)
+ }
+ array
+ }
+
+ override def splits = splits_.asInstanceOf[Array[Split]]
+
+ override def preferredLocations(split: Split) = {
+ val currSplit = split.asInstanceOf[CartesianSplit]
+ rdd1.preferredLocations(currSplit.s1) ++ rdd2.preferredLocations(currSplit.s2)
+ }
+
+ override def compute(split: Split) = {
+ val currSplit = split.asInstanceOf[CartesianSplit]
+ for (x <- rdd1.iterator(currSplit.s1); y <- rdd2.iterator(currSplit.s2)) yield (x, y)
+ }
+
+ override val dependencies = List(
+ new NarrowDependency(rdd1) {
+ def getParents(id: Int): Seq[Int] = List(id / numSplitsInRdd2)
+ },
+ new NarrowDependency(rdd2) {
+ def getParents(id: Int): Seq[Int] = List(id % numSplitsInRdd2)
+ }
+ )
+} \ No newline at end of file
diff --git a/core/src/main/scala/spark/Dependency.scala b/core/src/main/scala/spark/Dependency.scala
new file mode 100644
index 0000000000..20b0357e44
--- /dev/null
+++ b/core/src/main/scala/spark/Dependency.scala
@@ -0,0 +1,30 @@
+package spark
+
+@serializable
+abstract class Dependency[T](val rdd: RDD[T], val isShuffle: Boolean)
+
+abstract class NarrowDependency[T](rdd: RDD[T])
+extends Dependency(rdd, false) {
+ def getParents(outputPartition: Int): Seq[Int]
+}
+
+class ShuffleDependency[K, V, C](
+ val shuffleId: Int,
+ rdd: RDD[(K, V)],
+ val aggregator: Aggregator[K, V, C],
+ val partitioner: Partitioner[K]
+) extends Dependency(rdd, true)
+
+class OneToOneDependency[T](rdd: RDD[T]) extends NarrowDependency[T](rdd) {
+ override def getParents(partitionId: Int) = List(partitionId)
+}
+
+class RangeDependency[T](rdd: RDD[T], inStart: Int, outStart: Int, length: Int)
+extends NarrowDependency[T](rdd) {
+ override def getParents(partitionId: Int) = {
+ if (partitionId >= outStart && partitionId < outStart + length)
+ List(partitionId - outStart + inStart)
+ else
+ Nil
+ }
+}
diff --git a/core/src/main/scala/spark/Executor.scala b/core/src/main/scala/spark/Executor.scala
index b4d023b428..35469aeb3f 100644
--- a/core/src/main/scala/spark/Executor.scala
+++ b/core/src/main/scala/spark/Executor.scala
@@ -25,6 +25,8 @@ class Executor extends mesos.Executor with Logging {
// Initialize cache and broadcast system (uses some properties read above)
Cache.initialize()
Broadcast.initialize(false)
+ MapOutputTracker.initialize(false)
+ RDDCache.initialize(false)
// Create our ClassLoader (using spark properties) and set it on this thread
classLoader = createClassLoader()
diff --git a/core/src/main/scala/spark/HadoopFile.scala b/core/src/main/scala/spark/HadoopFile.scala
index 629dcc7da5..754466204b 100644
--- a/core/src/main/scala/spark/HadoopFile.scala
+++ b/core/src/main/scala/spark/HadoopFile.scala
@@ -14,12 +14,13 @@ import org.apache.hadoop.mapred.Reporter
import org.apache.hadoop.util.ReflectionUtils
/** A Spark split class that wraps around a Hadoop InputSplit */
-@serializable class HadoopSplit(@transient s: InputSplit)
+@serializable class HadoopSplit(rddId: Int, idx: Int, @transient s: InputSplit)
extends Split {
val inputSplit = new SerializableWritable[InputSplit](s)
- // Hadoop gives each split a unique toString value, so use this as our ID
- override def getId() = "HadoopSplit(" + inputSplit.toString + ")"
+ override def hashCode(): Int = (41 * (41 + rddId) + idx).toInt
+
+ override val index = idx
}
@@ -39,7 +40,10 @@ extends RDD[(K, V)](sc) {
FileInputFormat.setInputPaths(conf, path)
val inputFormat = createInputFormat(conf)
val inputSplits = inputFormat.getSplits(conf, sc.numCores)
- inputSplits.map(x => new HadoopSplit(x): Split).toArray
+ val array = new Array[Split] (inputSplits.size)
+ for (i <- 0 until inputSplits.size)
+ array(i) = new HadoopSplit(id, i, inputSplits(i))
+ array
}
def createInputFormat(conf: JobConf): InputFormat[K, V] = {
@@ -49,7 +53,7 @@ extends RDD[(K, V)](sc) {
override def splits = splits_
- override def iterator(theSplit: Split) = new Iterator[(K, V)] {
+ override def compute(theSplit: Split) = new Iterator[(K, V)] {
val split = theSplit.asInstanceOf[HadoopSplit]
var reader: RecordReader[K, V] = null
@@ -99,6 +103,8 @@ extends RDD[(K, V)](sc) {
val hadoopSplit = split.asInstanceOf[HadoopSplit]
hadoopSplit.inputSplit.value.getLocations.filter(_ != "localhost")
}
+
+ override val dependencies: List[Dependency[_]] = Nil
}
diff --git a/core/src/main/scala/spark/MapOutputTracker.scala b/core/src/main/scala/spark/MapOutputTracker.scala
index 2c487cb627..ac62c6e411 100644
--- a/core/src/main/scala/spark/MapOutputTracker.scala
+++ b/core/src/main/scala/spark/MapOutputTracker.scala
@@ -2,7 +2,34 @@ package spark
import java.util.concurrent.ConcurrentHashMap
+import scala.actors._
+import scala.actors.Actor._
+import scala.actors.remote._
+
+class MapOutputTracker extends DaemonActor with Logging {
+ def act() {
+ val port = System.getProperty("spark.master.port", "50501").toInt
+ RemoteActor.alive(port)
+ RemoteActor.register('MapOutputTracker, self)
+ logInfo("Started on port " + port)
+ }
+}
+
object MapOutputTracker {
+ var trackerActor: AbstractActor = null
+
+ def initialize(isMaster: Boolean) {
+ if (isMaster) {
+ val tracker = new MapOutputTracker
+ tracker.start
+ trackerActor = tracker
+ } else {
+ val host = System.getProperty("spark.master.host")
+ val port = System.getProperty("spark.master.port").toInt
+ trackerActor = RemoteActor.select(Node(host, port), 'MapOutputTracker)
+ }
+ }
+
private val serverUris = new ConcurrentHashMap[Int, Array[String]]
def registerMapOutput(shuffleId: Int, numMaps: Int, mapId: Int, serverUri: String) {
diff --git a/core/src/main/scala/spark/ParallelArray.scala b/core/src/main/scala/spark/ParallelArray.scala
index a01904d61c..e77bc3014f 100644
--- a/core/src/main/scala/spark/ParallelArray.scala
+++ b/core/src/main/scala/spark/ParallelArray.scala
@@ -17,8 +17,7 @@ extends Split {
case _ => false
}
- override def getId() =
- "ParallelArraySplit(arrayId %d, slice %d)".format(arrayId, slice)
+ override val index = slice
}
class ParallelArray[T: ClassManifest](
@@ -28,8 +27,6 @@ extends RDD[T](sc) {
// the RDD chain it gets cached. It might be worthwhile to write the data to
// a file in the DFS and read it in the split instead.
- val id = ParallelArray.newId()
-
@transient val splits_ = {
val slices = ParallelArray.slice(data, numSlices).toArray
slices.indices.map(i => new ParallelArraySplit(id, i, slices(i))).toArray
@@ -37,9 +34,11 @@ extends RDD[T](sc) {
override def splits = splits_.asInstanceOf[Array[Split]]
- override def iterator(s: Split) = s.asInstanceOf[ParallelArraySplit[T]].iterator
+ override def compute(s: Split) = s.asInstanceOf[ParallelArraySplit[T]].iterator
override def preferredLocations(s: Split): Seq[String] = Nil
+
+ override val dependencies: List[Dependency[_]] = Nil
}
private object ParallelArray {
diff --git a/core/src/main/scala/spark/Partitioner.scala b/core/src/main/scala/spark/Partitioner.scala
new file mode 100644
index 0000000000..cc1ca74447
--- /dev/null
+++ b/core/src/main/scala/spark/Partitioner.scala
@@ -0,0 +1,22 @@
+package spark
+
+@serializable
+abstract class Partitioner[K] {
+ def numPartitions: Int
+ def getPartition(key: K): Int
+}
+
+class HashPartitioner[K](partitions: Int) extends Partitioner[K] {
+ def numPartitions = partitions
+
+ def getPartition(key: K) = {
+ val mod = key.hashCode % partitions
+ if (mod < 0) mod + partitions else mod // Guard against negative hash codes
+ }
+
+ override def equals(other: Any): Boolean = other match {
+ case h: HashPartitioner[_] =>
+ h.numPartitions == numPartitions
+ case _ => false
+ }
+} \ No newline at end of file
diff --git a/core/src/main/scala/spark/RDD.scala b/core/src/main/scala/spark/RDD.scala
index 9b650427c8..df044bd6cf 100644
--- a/core/src/main/scala/spark/RDD.scala
+++ b/core/src/main/scala/spark/RDD.scala
@@ -16,84 +16,78 @@ import SparkContext._
import mesos._
@serializable
-abstract class Dependency[T](val rdd: RDD[T], val isShuffle: Boolean)
-
-abstract class NarrowDependency[T](rdd: RDD[T])
-extends Dependency(rdd, false) {
- def getParents(outputPartition: Int): Seq[Int]
-}
-
-class OneToOneDependency[T](rdd: RDD[T]) extends NarrowDependency[T](rdd) {
- override def getParents(partitionId: Int) = List(partitionId)
-}
-
-class ShuffleDependency[K, V, C](
- val shuffleId: Int,
- rdd: RDD[(K, V)],
- val aggregator: Aggregator[K, V, C],
- val partitioner: Partitioner[K]
-) extends Dependency(rdd, true)
-
-@serializable
-class Aggregator[K, V, C] (
- val createCombiner: V => C,
- val mergeValue: (C, V) => C,
- val mergeCombiners: (C, C) => C
-)
-
-@serializable
-abstract class Partitioner[K] {
- def numPartitions: Int
- def getPartition(key: K): Int
-}
-
-class HashPartitioner[K](partitions: Int) extends Partitioner[K] {
- def numPartitions = partitions
-
- def getPartition(key: K) = {
- val mod = key.hashCode % partitions
- if (mod < 0) mod + partitions else mod // Careful of negative hash codes
- }
-}
-
-@serializable
abstract class RDD[T: ClassManifest](@transient sc: SparkContext) {
+ // Methods that must be implemented by subclasses
def splits: Array[Split]
- def iterator(split: Split): Iterator[T]
+ def compute(split: Split): Iterator[T]
def preferredLocations(split: Split): Seq[String]
+ val dependencies: List[Dependency[_]]
- val dependencies: List[Dependency[_]] = Nil
+ // Optionally overridden by subclasses to specify how they are partitioned
val partitioner: Option[Partitioner[_]] = None
-
- def sparkContext = sc
-
+
+ def context = sc
+
+ // Get a unique ID for this RDD
+ val id = sc.newRddId()
+
+ // Variables relating to caching
+ private var shouldCache = false
+
+ // Change this RDD's caching
+ def cache(): RDD[T] = {
+ shouldCache = true
+ this
+ }
+
+ // Read this RDD; will read from cache if applicable, or otherwise compute
+ final def iterator(split: Split): Iterator[T] = {
+ if (shouldCache) {
+ RDDCache.getOrCompute[T](this, split)
+ } else {
+ compute(split)
+ }
+ }
+
+ // Transformations
+
def map[U: ClassManifest](f: T => U): RDD[U] = new MappedRDD(this, sc.clean(f))
def flatMap[U: ClassManifest](f: T => Traversable[U]): RDD[U] =
new FlatMappedRDD(this, sc.clean(f))
-
- /*
+
def filter(f: T => Boolean): RDD[T] = new FilteredRDD(this, sc.clean(f))
- def cache() = new CachedRDD(this)
-
def sample(withReplacement: Boolean, frac: Double, seed: Int): RDD[T] =
new SampledRDD(this, withReplacement, frac, seed)
+ def union(other: RDD[T]): RDD[T] = new UnionRDD(sc, Array(this, other))
+
+ def ++(other: RDD[T]): RDD[T] = this.union(other)
+
+ def glom(): RDD[Array[T]] = new SplitRDD(this)
+
+ def cartesian[U: ClassManifest](other: RDD[U]): RDD[(T, U)] =
+ new CartesianRDD(sc, this, other)
+
+ def groupBy[K](func: T => K, numSplits: Int): RDD[(K, Seq[T])] =
+ this.map(t => (func(t), t)).groupByKey(numSplits)
+
+ def groupBy[K](func: T => K): RDD[(K, Seq[T])] =
+ groupBy[K](func, sc.numCores)
+
+ // Parallel operations
+
def foreach(f: T => Unit) {
val cleanF = sc.clean(f)
- val tasks = splits.map(s => new ForeachTask(this, s, cleanF)).toArray
- sc.runTaskObjects(tasks)
+ sc.runJob(this, (iter: Iterator[T]) => iter.foreach(cleanF))
}
- */
def collect(): Array[T] = {
val results = sc.runJob(this, (iter: Iterator[T]) => iter.toArray)
Array.concat(results: _*)
}
- def toArray(): Array[T] = collect()
-
def reduce(f: (T, T) => T): T = {
val cleanF = sc.clean(f)
val reducePartition: Iterator[T] => Option[T] = iter => {
@@ -111,7 +105,15 @@ abstract class RDD[T: ClassManifest](@transient sc: SparkContext) {
else
return results.reduceLeft(f)
}
+
+ def count(): Long = {
+ sc.runJob(this, (iter: Iterator[T]) => iter.size.toLong).sum
+ }
+
+ def toArray(): Array[T] = collect()
+ // TODO: Reimplement these to properly build any shuffle dependencies on
+ // the cluster rather than attempting to compute a partiton on the master
/*
def take(num: Int): Array[T] = {
if (num == 0)
@@ -130,279 +132,43 @@ abstract class RDD[T: ClassManifest](@transient sc: SparkContext) {
case _ => throw new UnsupportedOperationException("empty collection")
}
*/
-
- def count(): Long = {
- try {
- map(x => 1L).reduce(_+_)
- } catch {
- case e: UnsupportedOperationException => 0L // No elements in RDD
- }
- }
-
- def union(other: RDD[T]): RDD[T] = new UnionRDD(sc, Array(this, other))
-
- def ++(other: RDD[T]): RDD[T] = this.union(other)
-
- //def splitRdd(): RDD[Array[T]] = new SplitRDD(this)
-
- //def cartesian[U: ClassManifest](other: RDD[U]): RDD[(T, U)] =
- // new CartesianRDD(sc, this, other)
-
- def groupBy[K](func: T => K, numSplits: Int): RDD[(K, Seq[T])] =
- this.map(t => (func(t), t)).groupByKey(numSplits)
-
- def groupBy[K](func: T => K): RDD[(K, Seq[T])] =
- groupBy[K](func, sc.numCores)
}
class MappedRDD[U: ClassManifest, T: ClassManifest](
prev: RDD[T], f: T => U)
-extends RDD[U](prev.sparkContext) {
+extends RDD[U](prev.context) {
override def splits = prev.splits
override def preferredLocations(split: Split) = prev.preferredLocations(split)
override val dependencies = List(new OneToOneDependency(prev))
- override def iterator(split: Split) = prev.iterator(split).map(f)
+ override def compute(split: Split) = prev.iterator(split).map(f)
}
class FlatMappedRDD[U: ClassManifest, T: ClassManifest](
prev: RDD[T], f: T => Traversable[U])
-extends RDD[U](prev.sparkContext) {
+extends RDD[U](prev.context) {
override def splits = prev.splits
override def preferredLocations(split: Split) = prev.preferredLocations(split)
override val dependencies = List(new OneToOneDependency(prev))
- override def iterator(split: Split) = prev.iterator(split).toStream.flatMap(f).iterator
+ override def compute(split: Split) = prev.iterator(split).toStream.flatMap(f).iterator
}
-/*
class FilteredRDD[T: ClassManifest](
prev: RDD[T], f: T => Boolean)
-extends RDD[T](prev.sparkContext) {
+extends RDD[T](prev.context) {
override def splits = prev.splits
override def preferredLocations(split: Split) = prev.preferredLocations(split)
- override def iterator(split: Split) = prev.iterator(split).filter(f)
+ override val dependencies = List(new OneToOneDependency(prev))
+ override def compute(split: Split) = prev.iterator(split).filter(f)
}
class SplitRDD[T: ClassManifest](prev: RDD[T])
-extends RDD[Array[T]](prev.sparkContext) {
+extends RDD[Array[T]](prev.context) {
override def splits = prev.splits
override def preferredLocations(split: Split) = prev.preferredLocations(split)
- override def iterator(split: Split) = Iterator.fromArray(Array(prev.iterator(split).toArray))
-}
-
-
-@serializable class SeededSplit(val prev: Split, val seed: Int) extends Split {
- override def getId() =
- "SeededSplit(" + prev.getId() + ", seed " + seed + ")"
-}
-
-class SampledRDD[T: ClassManifest](
- prev: RDD[T], withReplacement: Boolean, frac: Double, seed: Int)
-extends RDD[T](prev.sparkContext) {
-
- @transient val splits_ = { val rg = new Random(seed); prev.splits.map(x => new SeededSplit(x, rg.nextInt)) }
-
- override def splits = splits_.asInstanceOf[Array[Split]]
-
- override def preferredLocations(split: Split) = prev.preferredLocations(split.asInstanceOf[SeededSplit].prev)
-
- override def iterator(splitIn: Split) = {
- val split = splitIn.asInstanceOf[SeededSplit]
- val rg = new Random(split.seed);
- // Sampling with replacement (TODO: use reservoir sampling to make this more efficient?)
- if (withReplacement) {
- val oldData = prev.iterator(split.prev).toArray
- val sampleSize = (oldData.size * frac).ceil.toInt
- val sampledData = for (i <- 1 to sampleSize) yield oldData(rg.nextInt(oldData.size)) // all of oldData's indices are candidates, even if sampleSize < oldData.size
- sampledData.iterator
- }
- // Sampling without replacement
- else {
- prev.iterator(split.prev).filter(x => (rg.nextDouble <= frac))
- }
- }
-}
-
-
-class CachedRDD[T](
- prev: RDD[T])(implicit m: ClassManifest[T])
-extends RDD[T](prev.sparkContext) with Logging {
- val id = CachedRDD.newId()
- @transient val cacheLocs = Map[Split, List[String]]()
-
- override def splits = prev.splits
-
- override def preferredLocations(split: Split) = {
- if (cacheLocs.contains(split))
- cacheLocs(split)
- else
- prev.preferredLocations(split)
- }
-
- override def iterator(split: Split): Iterator[T] = {
- val key = id + "::" + split.getId()
- logInfo("CachedRDD split key is " + key)
- val cache = CachedRDD.cache
- val loading = CachedRDD.loading
- val cachedVal = cache.get(key)
- if (cachedVal != null) {
- // Split is in cache, so just return its values
- return Iterator.fromArray(cachedVal.asInstanceOf[Array[T]])
- } else {
- // Mark the split as loading (unless someone else marks it first)
- loading.synchronized {
- if (loading.contains(key)) {
- while (loading.contains(key)) {
- try {loading.wait()} catch {case _ =>}
- }
- return Iterator.fromArray(cache.get(key).asInstanceOf[Array[T]])
- } else {
- loading.add(key)
- }
- }
- // If we got here, we have to load the split
- logInfo("Loading and caching " + split)
- val array = prev.iterator(split).toArray(m)
- cache.put(key, array)
- loading.synchronized {
- loading.remove(key)
- loading.notifyAll()
- }
- return Iterator.fromArray(array)
- }
- }
-
- override def taskStarted(split: Split, slot: SlaveOffer) {
- val oldList = cacheLocs.getOrElse(split, Nil)
- val host = slot.getHost
- if (!oldList.contains(host))
- cacheLocs(split) = host :: oldList
- }
-}
-
-private object CachedRDD {
- val nextId = new AtomicLong(0) // Generates IDs for cached RDDs (on master)
- def newId() = nextId.getAndIncrement()
-
- // Stores map results for various splits locally (on workers)
- val cache = Cache.newKeySpace()
-
- // Remembers which splits are currently being loaded (on workers)
- val loading = new HashSet[String]
-}
-*/
-
-@serializable
-class UnionSplit[T: ClassManifest](rdd: RDD[T], index: Int, split: Split)
-extends Split {
- def iterator() = rdd.iterator(split)
- def preferredLocations() = rdd.preferredLocations(split)
- override def getId() = "UnionSplit(" + index + ", " + split.getId() + ")"
-}
-
-@serializable
-class UnionRDD[T: ClassManifest](sc: SparkContext, rdds: Seq[RDD[T]])
-extends RDD[T](sc) {
- @transient val splits_ : Array[Split] = {
- val splits: Seq[Split] =
- for ((rdd, index) <- rdds.zipWithIndex; split <- rdd.splits)
- yield new UnionSplit(rdd, index, split)
- splits.toArray
- }
-
- override def splits = splits_
-
- override def iterator(s: Split): Iterator[T] =
- s.asInstanceOf[UnionSplit[T]].iterator()
-
- override def preferredLocations(s: Split): Seq[String] =
- s.asInstanceOf[UnionSplit[T]].preferredLocations()
-}
-
-/*
-@serializable class CartesianSplit(val s1: Split, val s2: Split) extends Split {
- override def getId() =
- "CartesianSplit(" + s1.getId() + ", " + s2.getId() + ")"
-}
-
-@serializable
-class CartesianRDD[T: ClassManifest, U:ClassManifest](
- sc: SparkContext, rdd1: RDD[T], rdd2: RDD[U])
-extends RDD[Pair[T, U]](sc) {
- @transient val splits_ = {
- // create the cross product split
- rdd2.splits.map(y => rdd1.splits.map(x => new CartesianSplit(x, y))).flatten
- }
-
- override def splits = splits_.asInstanceOf[Array[Split]]
-
- override def preferredLocations(split: Split) = {
- val currSplit = split.asInstanceOf[CartesianSplit]
- rdd1.preferredLocations(currSplit.s1) ++ rdd2.preferredLocations(currSplit.s2)
- }
-
- override def iterator(split: Split) = {
- val currSplit = split.asInstanceOf[CartesianSplit]
- for (x <- rdd1.iterator(currSplit.s1); y <- rdd2.iterator(currSplit.s2)) yield (x, y)
- }
-
- override def taskStarted(split: Split, slot: SlaveOffer) = {
- val currSplit = split.asInstanceOf[CartesianSplit]
- rdd1.taskStarted(currSplit.s1, slot)
- rdd2.taskStarted(currSplit.s2, slot)
- }
-}
-*/
-
-class ShuffledRDDSplit(val id: Int) extends Split {
- override def getId() = "ShuffleRDDSplit(" + id + ")"
+ override val dependencies = List(new OneToOneDependency(prev))
+ override def compute(split: Split) = Iterator.fromArray(Array(prev.iterator(split).toArray))
}
-class ShuffledRDD[K, V, C](
- parent: RDD[(K, V)],
- aggregator: Aggregator[K, V, C],
- partitioner: Partitioner[K])
-extends RDD[(K, C)](parent.sparkContext) {
- @transient val splits_ =
- Array.tabulate[Split](partitioner.numPartitions)(i => new ShuffledRDDSplit(i))
-
- val dep = new ShuffleDependency(sparkContext.newShuffleId, parent, aggregator, partitioner)
-
- override def splits = splits_
-
- override def preferredLocations(split: Split) = Nil
-
- override def iterator(split: Split): Iterator[(K, C)] = {
- val shuffleId = dep.shuffleId
- val splitId = split.asInstanceOf[ShuffledRDDSplit].id
- val splitsByUri = new HashMap[String, ArrayBuffer[Int]]
- val serverUris = MapOutputTracker.getServerUris(shuffleId)
- for ((serverUri, index) <- serverUris.zipWithIndex) {
- splitsByUri.getOrElseUpdate(serverUri, ArrayBuffer()) += index
- }
- val combiners = new HashMap[K, C]
- for ((serverUri, inputIds) <- Utils.shuffle(splitsByUri)) {
- for (i <- inputIds) {
- val url = "%s/shuffle/%d/%d/%d".format(serverUri, shuffleId, i, splitId)
- val inputStream = new ObjectInputStream(new URL(url).openStream())
- try {
- while (true) {
- val (k, c) = inputStream.readObject().asInstanceOf[(K, C)]
- combiners(k) = combiners.get(k) match {
- case Some(oldC) => aggregator.mergeCombiners(oldC, c)
- case None => c
- }
- }
- } catch {
- case e: EOFException => {}
- }
- inputStream.close()
- }
- }
- combiners.iterator
- }
-
- override val dependencies = List(dep)
-}
@serializable class PairRDDExtras[K, V](self: RDD[(K, V)]) {
def reduceByKeyToDriver(func: (V, V) => V): Map[K, V] = {
@@ -427,13 +193,6 @@ extends RDD[(K, C)](parent.sparkContext) {
val aggregator = new Aggregator[K, V, C](createCombiner, mergeValue, mergeCombiners)
val partitioner = new HashPartitioner[K](numSplits)
new ShuffledRDD(self, aggregator, partitioner)
- // TODO
- /*
- val shufClass = Class.forName(System.getProperty(
- "spark.shuffle.class", "spark.LocalFileShuffle"))
- val shuf = shufClass.newInstance().asInstanceOf[Shuffle[K, V, C]]
- shuf.compute(self, numSplits, createCombiner, mergeValue, mergeCombiners)
- */
}
def reduceByKey(func: (V, V) => V, numSplits: Int): RDD[(K, V)] = {
@@ -484,7 +243,7 @@ extends RDD[(K, C)](parent.sparkContext) {
join(other, numCores)
}
- def numCores = self.sparkContext.numCores
+ def numCores = self.context.numCores
def collectAsMap(): Map[K, V] = HashMap(self.collect(): _*)
}
diff --git a/core/src/main/scala/spark/RDDCache.scala b/core/src/main/scala/spark/RDDCache.scala
new file mode 100644
index 0000000000..2f2ec9d237
--- /dev/null
+++ b/core/src/main/scala/spark/RDDCache.scala
@@ -0,0 +1,92 @@
+package spark
+
+import scala.actors._
+import scala.actors.Actor._
+import scala.actors.remote._
+
+sealed trait CacheMessage
+case class CacheEntryAdded(rddId: Int, partition: Int, host: String)
+case class CacheEntryRemoved(rddId: Int, partition: Int, host: String)
+
+class RDDCacheTracker extends DaemonActor with Logging {
+ def act() {
+ val port = System.getProperty("spark.master.port", "50501").toInt
+ RemoteActor.alive(port)
+ RemoteActor.register('RDDCacheTracker, self)
+ logInfo("Started on port " + port)
+
+ loop {
+ react {
+ case CacheEntryAdded(rddId, partition, host) =>
+ logInfo("Cache entry added: %s, %s, %s".format(rddId, partition, host))
+
+ case CacheEntryRemoved(rddId, partition, host) =>
+ logInfo("Cache entry removed: %s, %s, %s".format(rddId, partition, host))
+ }
+ }
+ }
+}
+
+import scala.collection.mutable.HashSet
+private object RDDCache extends Logging {
+ // Stores map results for various splits locally
+ val cache = Cache.newKeySpace()
+
+ // Remembers which splits are currently being loaded
+ val loading = new HashSet[(Int, Int)]
+
+ // Tracker actor on the master, or remote reference to it on workers
+ var trackerActor: AbstractActor = null
+
+ def initialize(isMaster: Boolean) {
+ if (isMaster) {
+ val tracker = new RDDCacheTracker
+ tracker.start
+ trackerActor = tracker
+ } else {
+ val host = System.getProperty("spark.master.host")
+ val port = System.getProperty("spark.master.port").toInt
+ trackerActor = RemoteActor.select(Node(host, port), 'RDDCacheTracker)
+ }
+ }
+
+ // Gets or computes an RDD split
+ def getOrCompute[T](rdd: RDD[T], split: Split)(implicit m: ClassManifest[T])
+ : Iterator[T] = {
+ val key = (rdd.id, split.index)
+ logInfo("CachedRDD split key is " + key)
+ val cache = RDDCache.cache
+ val loading = RDDCache.loading
+ val cachedVal = cache.get(key)
+ if (cachedVal != null) {
+ // Split is in cache, so just return its values
+ return Iterator.fromArray(cachedVal.asInstanceOf[Array[T]])
+ } else {
+ // Mark the split as loading (unless someone else marks it first)
+ loading.synchronized {
+ if (loading.contains(key)) {
+ while (loading.contains(key)) {
+ try {loading.wait()} catch {case _ =>}
+ }
+ return Iterator.fromArray(cache.get(key).asInstanceOf[Array[T]])
+ } else {
+ loading.add(key)
+ }
+ }
+ val host = System.getProperty("spark.hostname", Utils.localHostName)
+ trackerActor ! CacheEntryAdded(rdd.id, split.index, host)
+ // If we got here, we have to load the split
+ // TODO: fetch any remote copy of the split that may be available
+ // TODO: also notify the master that we're loading it
+ // TODO: also register a listener for when it unloads
+ logInfo("Computing and caching " + split)
+ val array = rdd.compute(split).toArray(m)
+ cache.put(key, array)
+ loading.synchronized {
+ loading.remove(key)
+ loading.notifyAll()
+ }
+ return Iterator.fromArray(array)
+ }
+ }
+} \ No newline at end of file
diff --git a/core/src/main/scala/spark/SampledRDD.scala b/core/src/main/scala/spark/SampledRDD.scala
new file mode 100644
index 0000000000..2eeafedcdd
--- /dev/null
+++ b/core/src/main/scala/spark/SampledRDD.scala
@@ -0,0 +1,36 @@
+package spark
+
+import java.util.Random
+
+@serializable class SampledRDDSplit(val prev: Split, val seed: Int) extends Split {
+ override val index = prev.index
+}
+
+class SampledRDD[T: ClassManifest](
+ prev: RDD[T], withReplacement: Boolean, frac: Double, seed: Int)
+extends RDD[T](prev.context) {
+
+ @transient val splits_ = { val rg = new Random(seed); prev.splits.map(x => new SampledRDDSplit(x, rg.nextInt)) }
+
+ override def splits = splits_.asInstanceOf[Array[Split]]
+
+ override val dependencies = List(new OneToOneDependency(prev))
+
+ override def preferredLocations(split: Split) = prev.preferredLocations(split.asInstanceOf[SampledRDDSplit].prev)
+
+ override def compute(splitIn: Split) = {
+ val split = splitIn.asInstanceOf[SampledRDDSplit]
+ val rg = new Random(split.seed);
+ // Sampling with replacement (TODO: use reservoir sampling to make this more efficient?)
+ if (withReplacement) {
+ val oldData = prev.iterator(split.prev).toArray
+ val sampleSize = (oldData.size * frac).ceil.toInt
+ val sampledData = for (i <- 1 to sampleSize) yield oldData(rg.nextInt(oldData.size)) // all of oldData's indices are candidates, even if sampleSize < oldData.size
+ sampledData.iterator
+ }
+ // Sampling without replacement
+ else {
+ prev.iterator(split.prev).filter(x => (rg.nextDouble <= frac))
+ }
+ }
+}
diff --git a/core/src/main/scala/spark/ShuffledRDD.scala b/core/src/main/scala/spark/ShuffledRDD.scala
new file mode 100644
index 0000000000..826957a469
--- /dev/null
+++ b/core/src/main/scala/spark/ShuffledRDD.scala
@@ -0,0 +1,60 @@
+package spark
+
+import java.net.URL
+import java.io.EOFException
+import java.io.ObjectInputStream
+import scala.collection.mutable.ArrayBuffer
+import scala.collection.mutable.HashMap
+
+class ShuffledRDDSplit(val idx: Int) extends Split {
+ override val index = idx
+ override def hashCode(): Int = idx
+}
+
+class ShuffledRDD[K, V, C](
+ parent: RDD[(K, V)],
+ aggregator: Aggregator[K, V, C],
+ part : Partitioner[K])
+extends RDD[(K, C)](parent.context) {
+ override val partitioner = Some(part)
+
+ @transient val splits_ =
+ Array.tabulate[Split](part.numPartitions)(i => new ShuffledRDDSplit(i))
+
+ override def splits = splits_
+
+ override def preferredLocations(split: Split) = Nil
+
+ val dep = new ShuffleDependency(context.newShuffleId, parent, aggregator, part)
+ override val dependencies = List(dep)
+
+ override def compute(split: Split): Iterator[(K, C)] = {
+ val shuffleId = dep.shuffleId
+ val splitId = split.index
+ val splitsByUri = new HashMap[String, ArrayBuffer[Int]]
+ val serverUris = MapOutputTracker.getServerUris(shuffleId)
+ for ((serverUri, index) <- serverUris.zipWithIndex) {
+ splitsByUri.getOrElseUpdate(serverUri, ArrayBuffer()) += index
+ }
+ val combiners = new HashMap[K, C]
+ for ((serverUri, inputIds) <- Utils.shuffle(splitsByUri)) {
+ for (i <- inputIds) {
+ val url = "%s/shuffle/%d/%d/%d".format(serverUri, shuffleId, i, splitId)
+ val inputStream = new ObjectInputStream(new URL(url).openStream())
+ try {
+ while (true) {
+ val (k, c) = inputStream.readObject().asInstanceOf[(K, C)]
+ combiners(k) = combiners.get(k) match {
+ case Some(oldC) => aggregator.mergeCombiners(oldC, c)
+ case None => c
+ }
+ }
+ } catch {
+ case e: EOFException => {}
+ }
+ inputStream.close()
+ }
+ }
+ combiners.iterator
+ }
+} \ No newline at end of file
diff --git a/core/src/main/scala/spark/SparkContext.scala b/core/src/main/scala/spark/SparkContext.scala
index b4799d7c08..fda2ee3be7 100644
--- a/core/src/main/scala/spark/SparkContext.scala
+++ b/core/src/main/scala/spark/SparkContext.scala
@@ -1,6 +1,7 @@
package spark
import java.io._
+import java.util.concurrent.atomic.AtomicInteger
import scala.collection.mutable.ArrayBuffer
@@ -34,6 +35,8 @@ extends Logging {
scheduler.start()
Cache.initialize()
Broadcast.initialize(true)
+ MapOutputTracker.initialize(true)
+ RDDCache.initialize(true)
// Methods for creating RDDs
@@ -42,6 +45,12 @@ extends Logging {
def parallelize[T: ClassManifest](seq: Seq[T]): RDD[T] =
parallelize(seq, numCores)
+
+ def makeRDD[T: ClassManifest](seq: Seq[T], numSlices: Int): RDD[T] =
+ parallelize(seq, numSlices)
+
+ def makeRDD[T: ClassManifest](seq: Seq[T]): RDD[T] =
+ parallelize(seq, numCores)
def textFile(path: String): RDD[String] =
new HadoopTextFile(this, path)
@@ -158,12 +167,16 @@ extends Logging {
// Get the number of cores available to run tasks (as reported by Scheduler)
def numCores = scheduler.numCores
- private var nextShuffleId: Int = 0
+ private var nextShuffleId = new AtomicInteger(0)
private[spark] def newShuffleId(): Int = {
- val id = nextShuffleId
- nextShuffleId += 1
- id
+ nextShuffleId.getAndIncrement()
+ }
+
+ private var nextRddId = new AtomicInteger(0)
+
+ private[spark] def newRddId(): Int = {
+ nextRddId.getAndIncrement()
}
}
diff --git a/core/src/main/scala/spark/Split.scala b/core/src/main/scala/spark/Split.scala
index 116cd16370..62bb5f82c5 100644
--- a/core/src/main/scala/spark/Split.scala
+++ b/core/src/main/scala/spark/Split.scala
@@ -5,9 +5,10 @@ package spark
*/
@serializable trait Split {
/**
- * Get a unique ID for this split which can be used, for example, to
- * set up caches based on it. The ID should stay the same if we serialize
- * and then deserialize the split.
+ * Get the split's index within its parent RDD
*/
- def getId(): String
+ val index: Int
+
+ // A better default implementation of HashCode
+ override def hashCode(): Int = index
}
diff --git a/core/src/main/scala/spark/UnionRDD.scala b/core/src/main/scala/spark/UnionRDD.scala
new file mode 100644
index 0000000000..78297be4f3
--- /dev/null
+++ b/core/src/main/scala/spark/UnionRDD.scala
@@ -0,0 +1,43 @@
+package spark
+
+import scala.collection.mutable.ArrayBuffer
+
+@serializable
+class UnionSplit[T: ClassManifest](idx: Int, rdd: RDD[T], split: Split)
+extends Split {
+ def iterator() = rdd.iterator(split)
+ def preferredLocations() = rdd.preferredLocations(split)
+ override val index = idx
+}
+
+@serializable
+class UnionRDD[T: ClassManifest](sc: SparkContext, rdds: Seq[RDD[T]])
+extends RDD[T](sc) {
+ @transient val splits_ : Array[Split] = {
+ val array = new Array[Split](rdds.map(_.splits.size).sum)
+ var pos = 0
+ for (rdd <- rdds; split <- rdd.splits) {
+ array(pos) = new UnionSplit(pos, rdd, split)
+ pos += 1
+ }
+ array
+ }
+
+ override def splits = splits_
+
+ override val dependencies = {
+ val deps = new ArrayBuffer[Dependency[_]]
+ var pos = 0
+ for ((rdd, index) <- rdds.zipWithIndex) {
+ deps += new RangeDependency(rdd, 0, pos, rdd.splits.size)
+ pos += rdd.splits.size
+ }
+ deps.toList
+ }
+
+ override def compute(s: Split): Iterator[T] =
+ s.asInstanceOf[UnionSplit[T]].iterator()
+
+ override def preferredLocations(s: Split): Seq[String] =
+ s.asInstanceOf[UnionSplit[T]].preferredLocations()
+} \ No newline at end of file
diff --git a/core/src/main/scala/spark/Utils.scala b/core/src/main/scala/spark/Utils.scala
index e333dd9c91..00cbbfd616 100644
--- a/core/src/main/scala/spark/Utils.scala
+++ b/core/src/main/scala/spark/Utils.scala
@@ -124,4 +124,11 @@ object Utils {
// and join them into a string
return bytes.map(b => (b.toInt + 256) % 256).mkString(".")
}
+
+ /**
+ * Get the local machine's hostname
+ */
+ def localHostName(): String = {
+ return InetAddress.getLocalHost().getHostName
+ }
}