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authorLiang-Chi Hsieh <simonh@tw.ibm.com>2016-03-28 09:58:47 -0700
committerDavies Liu <davies.liu@gmail.com>2016-03-28 09:58:47 -0700
commit68c0c460bfc51d7f69d09b613c49c212dd0b375c (patch)
tree3c1ee9e3d56e7c8e41c54b70a6bf8472c0078d54 /core/src/main/scala/org/apache
parentc8388297c436691a236520d2396deaf556aedb0e (diff)
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[SPARK-13742] [CORE] Add non-iterator interface to RandomSampler
JIRA: https://issues.apache.org/jira/browse/SPARK-13742 ## What changes were proposed in this pull request? `RandomSampler.sample` currently accepts iterator as input and output another iterator. This makes it inappropriate to use in wholestage codegen of `Sampler` operator #11517. This change is to add non-iterator interface to `RandomSampler`. This change adds a new method `def sample(): Int` to the trait `RandomSampler`. As we don't need to know the actual values of the sampling items, so this new method takes no arguments. This method will decide whether to sample the next item or not. It returns how many times the next item will be sampled. For `BernoulliSampler` and `BernoulliCellSampler`, the returned sampling times can only be 0 or 1. It simply means whether to sample the next item or not. For `PoissonSampler`, the returned value can be more than 1, meaning the next item will be sampled multiple times. ## How was this patch tested? Tests are added into `RandomSamplerSuite`. Author: Liang-Chi Hsieh <simonh@tw.ibm.com> Author: Liang-Chi Hsieh <viirya@appier.com> Author: Liang-Chi Hsieh <viirya@gmail.com> Closes #11578 from viirya/random-sampler-no-iterator.
Diffstat (limited to 'core/src/main/scala/org/apache')
-rw-r--r--core/src/main/scala/org/apache/spark/util/random/RandomSampler.scala201
1 files changed, 90 insertions, 111 deletions
diff --git a/core/src/main/scala/org/apache/spark/util/random/RandomSampler.scala b/core/src/main/scala/org/apache/spark/util/random/RandomSampler.scala
index 3c61528ab5..2921b939bc 100644
--- a/core/src/main/scala/org/apache/spark/util/random/RandomSampler.scala
+++ b/core/src/main/scala/org/apache/spark/util/random/RandomSampler.scala
@@ -39,7 +39,14 @@ import org.apache.spark.annotation.DeveloperApi
trait RandomSampler[T, U] extends Pseudorandom with Cloneable with Serializable {
/** take a random sample */
- def sample(items: Iterator[T]): Iterator[U]
+ def sample(items: Iterator[T]): Iterator[U] =
+ items.filter(_ => sample > 0).asInstanceOf[Iterator[U]]
+
+ /**
+ * Whether to sample the next item or not.
+ * Return how many times the next item will be sampled. Return 0 if it is not sampled.
+ */
+ def sample(): Int
/** return a copy of the RandomSampler object */
override def clone: RandomSampler[T, U] =
@@ -107,21 +114,13 @@ class BernoulliCellSampler[T](lb: Double, ub: Double, complement: Boolean = fals
override def setSeed(seed: Long): Unit = rng.setSeed(seed)
- override def sample(items: Iterator[T]): Iterator[T] = {
+ override def sample(): Int = {
if (ub - lb <= 0.0) {
- if (complement) items else Iterator.empty
+ if (complement) 1 else 0
} else {
- if (complement) {
- items.filter { item => {
- val x = rng.nextDouble()
- (x < lb) || (x >= ub)
- }}
- } else {
- items.filter { item => {
- val x = rng.nextDouble()
- (x >= lb) && (x < ub)
- }}
- }
+ val x = rng.nextDouble()
+ val n = if ((x >= lb) && (x < ub)) 1 else 0
+ if (complement) 1 - n else n
}
}
@@ -155,15 +154,22 @@ class BernoulliSampler[T: ClassTag](fraction: Double) extends RandomSampler[T, T
override def setSeed(seed: Long): Unit = rng.setSeed(seed)
- override def sample(items: Iterator[T]): Iterator[T] = {
+ private lazy val gapSampling: GapSampling =
+ new GapSampling(fraction, rng, RandomSampler.rngEpsilon)
+
+ override def sample(): Int = {
if (fraction <= 0.0) {
- Iterator.empty
+ 0
} else if (fraction >= 1.0) {
- items
+ 1
} else if (fraction <= RandomSampler.defaultMaxGapSamplingFraction) {
- new GapSamplingIterator(items, fraction, rng, RandomSampler.rngEpsilon)
+ gapSampling.sample()
} else {
- items.filter { _ => rng.nextDouble() <= fraction }
+ if (rng.nextDouble() <= fraction) {
+ 1
+ } else {
+ 0
+ }
}
}
@@ -201,15 +207,29 @@ class PoissonSampler[T: ClassTag](
rngGap.setSeed(seed)
}
- override def sample(items: Iterator[T]): Iterator[T] = {
+ private lazy val gapSamplingReplacement =
+ new GapSamplingReplacement(fraction, rngGap, RandomSampler.rngEpsilon)
+
+ override def sample(): Int = {
if (fraction <= 0.0) {
- Iterator.empty
+ 0
} else if (useGapSamplingIfPossible &&
fraction <= RandomSampler.defaultMaxGapSamplingFraction) {
- new GapSamplingReplacementIterator(items, fraction, rngGap, RandomSampler.rngEpsilon)
+ gapSamplingReplacement.sample()
+ } else {
+ rng.sample()
+ }
+ }
+
+ override def sample(items: Iterator[T]): Iterator[T] = {
+ if (fraction <= 0.0) {
+ Iterator.empty
} else {
+ val useGapSampling = useGapSamplingIfPossible &&
+ fraction <= RandomSampler.defaultMaxGapSamplingFraction
+
items.flatMap { item =>
- val count = rng.sample()
+ val count = if (useGapSampling) gapSamplingReplacement.sample() else rng.sample()
if (count == 0) Iterator.empty else Iterator.fill(count)(item)
}
}
@@ -220,50 +240,36 @@ class PoissonSampler[T: ClassTag](
private[spark]
-class GapSamplingIterator[T: ClassTag](
- var data: Iterator[T],
+class GapSampling(
f: Double,
rng: Random = RandomSampler.newDefaultRNG,
- epsilon: Double = RandomSampler.rngEpsilon) extends Iterator[T] {
+ epsilon: Double = RandomSampler.rngEpsilon) extends Serializable {
require(f > 0.0 && f < 1.0, s"Sampling fraction ($f) must reside on open interval (0, 1)")
require(epsilon > 0.0, s"epsilon ($epsilon) must be > 0")
- /** implement efficient linear-sequence drop until Scala includes fix for jira SI-8835. */
- private val iterDrop: Int => Unit = {
- val arrayClass = Array.empty[T].iterator.getClass
- val arrayBufferClass = ArrayBuffer.empty[T].iterator.getClass
- data.getClass match {
- case `arrayClass` =>
- (n: Int) => { data = data.drop(n) }
- case `arrayBufferClass` =>
- (n: Int) => { data = data.drop(n) }
- case _ =>
- (n: Int) => {
- var j = 0
- while (j < n && data.hasNext) {
- data.next()
- j += 1
- }
- }
- }
- }
-
- override def hasNext: Boolean = data.hasNext
+ private val lnq = math.log1p(-f)
- override def next(): T = {
- val r = data.next()
- advance()
- r
+ /** Return 1 if the next item should be sampled. Otherwise, return 0. */
+ def sample(): Int = {
+ if (countForDropping > 0) {
+ countForDropping -= 1
+ 0
+ } else {
+ advance()
+ 1
+ }
}
- private val lnq = math.log1p(-f)
+ private var countForDropping: Int = 0
- /** skip elements that won't be sampled, according to geometric dist P(k) = (f)(1-f)^k. */
+ /**
+ * Decide the number of elements that won't be sampled,
+ * according to geometric dist P(k) = (f)(1-f)^k.
+ */
private def advance(): Unit = {
val u = math.max(rng.nextDouble(), epsilon)
- val k = (math.log(u) / lnq).toInt
- iterDrop(k)
+ countForDropping = (math.log(u) / lnq).toInt
}
/** advance to first sample as part of object construction. */
@@ -273,73 +279,24 @@ class GapSamplingIterator[T: ClassTag](
// work reliably.
}
+
private[spark]
-class GapSamplingReplacementIterator[T: ClassTag](
- var data: Iterator[T],
- f: Double,
- rng: Random = RandomSampler.newDefaultRNG,
- epsilon: Double = RandomSampler.rngEpsilon) extends Iterator[T] {
+class GapSamplingReplacement(
+ val f: Double,
+ val rng: Random = RandomSampler.newDefaultRNG,
+ epsilon: Double = RandomSampler.rngEpsilon) extends Serializable {
require(f > 0.0, s"Sampling fraction ($f) must be > 0")
require(epsilon > 0.0, s"epsilon ($epsilon) must be > 0")
- /** implement efficient linear-sequence drop until scala includes fix for jira SI-8835. */
- private val iterDrop: Int => Unit = {
- val arrayClass = Array.empty[T].iterator.getClass
- val arrayBufferClass = ArrayBuffer.empty[T].iterator.getClass
- data.getClass match {
- case `arrayClass` =>
- (n: Int) => { data = data.drop(n) }
- case `arrayBufferClass` =>
- (n: Int) => { data = data.drop(n) }
- case _ =>
- (n: Int) => {
- var j = 0
- while (j < n && data.hasNext) {
- data.next()
- j += 1
- }
- }
- }
- }
-
- /** current sampling value, and its replication factor, as we are sampling with replacement. */
- private var v: T = _
- private var rep: Int = 0
-
- override def hasNext: Boolean = data.hasNext || rep > 0
-
- override def next(): T = {
- val r = v
- rep -= 1
- if (rep <= 0) advance()
- r
- }
-
- /**
- * Skip elements with replication factor zero (i.e. elements that won't be sampled).
- * Samples 'k' from geometric distribution P(k) = (1-q)(q)^k, where q = e^(-f), that is
- * q is the probability of Poisson(0; f)
- */
- private def advance(): Unit = {
- val u = math.max(rng.nextDouble(), epsilon)
- val k = (math.log(u) / (-f)).toInt
- iterDrop(k)
- // set the value and replication factor for the next value
- if (data.hasNext) {
- v = data.next()
- rep = poissonGE1
- }
- }
-
- private val q = math.exp(-f)
+ protected val q = math.exp(-f)
/**
* Sample from Poisson distribution, conditioned such that the sampled value is >= 1.
* This is an adaptation from the algorithm for Generating Poisson distributed random variables:
* http://en.wikipedia.org/wiki/Poisson_distribution
*/
- private def poissonGE1: Int = {
+ protected def poissonGE1: Int = {
// simulate that the standard poisson sampling
// gave us at least one iteration, for a sample of >= 1
var pp = q + ((1.0 - q) * rng.nextDouble())
@@ -353,6 +310,28 @@ class GapSamplingReplacementIterator[T: ClassTag](
}
r
}
+ private var countForDropping: Int = 0
+
+ def sample(): Int = {
+ if (countForDropping > 0) {
+ countForDropping -= 1
+ 0
+ } else {
+ val r = poissonGE1
+ advance()
+ r
+ }
+ }
+
+ /**
+ * Skip elements with replication factor zero (i.e. elements that won't be sampled).
+ * Samples 'k' from geometric distribution P(k) = (1-q)(q)^k, where q = e^(-f), that is
+ * q is the probabililty of Poisson(0; f)
+ */
+ private def advance(): Unit = {
+ val u = math.max(rng.nextDouble(), epsilon)
+ countForDropping = (math.log(u) / (-f)).toInt
+ }
/** advance to first sample as part of object construction. */
advance()