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authorTor Myklebust <tmyklebu@gmail.com>2013-12-19 22:45:16 -0500
committerTor Myklebust <tmyklebu@gmail.com>2013-12-19 22:45:16 -0500
commit2328bdd00f701ca3b1bc7fdf8b2968fafc58fd11 (patch)
treed17922b3b78cdc7eebf121b653fdf5010dc279e0 /python
parentded67ee90c2c0b22d67e623156a3f6cce8573abd (diff)
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Python side of python bindings for linear, Lasso, and ridge regression
Diffstat (limited to 'python')
-rw-r--r--python/pyspark/__init__.py6
-rw-r--r--python/pyspark/mllib.py81
2 files changed, 72 insertions, 15 deletions
diff --git a/python/pyspark/__init__.py b/python/pyspark/__init__.py
index 9f71db397d..7c8f9148d5 100644
--- a/python/pyspark/__init__.py
+++ b/python/pyspark/__init__.py
@@ -42,7 +42,9 @@ from pyspark.context import SparkContext
from pyspark.rdd import RDD
from pyspark.files import SparkFiles
from pyspark.storagelevel import StorageLevel
-from pyspark.mllib import LinearRegressionModel
+from pyspark.mllib import LinearRegressionModel, LassoModel, \
+ RidgeRegressionModel
-__all__ = ["SparkContext", "RDD", "SparkFiles", "StorageLevel", "LinearRegressionModel"];
+__all__ = ["SparkContext", "RDD", "SparkFiles", "StorageLevel", \
+ "LinearRegressionModel", "LassoModel", "RidgeRegressionModel"];
diff --git a/python/pyspark/mllib.py b/python/pyspark/mllib.py
index 0dfc4909c7..d3127874be 100644
--- a/python/pyspark/mllib.py
+++ b/python/pyspark/mllib.py
@@ -75,7 +75,7 @@ def _deserialize_double_matrix(ba):
else:
raise TypeError("_deserialize_double_matrix called on a non-bytearray")
-class LinearRegressionModel(object):
+class LinearModel(object):
def __init__(self, coeff, intercept):
self._coeff = coeff
self._intercept = intercept
@@ -83,7 +83,7 @@ class LinearRegressionModel(object):
def predict(self, x):
if (type(x) == ndarray):
if (x.ndim == 1):
- return dot(_coeff, x) - _intercept
+ return dot(_coeff, x) + _intercept
else:
raise RuntimeError("Bulk predict not yet supported.")
elif (type(x) == RDD):
@@ -92,16 +92,71 @@ class LinearRegressionModel(object):
raise TypeError("Bad type argument to "
"LinearRegressionModel::predict")
+# Map a pickled Python RDD of numpy double vectors to a Java RDD of
+# _serialized_double_vectors
+def _get_unmangled_double_vector_rdd(data):
+ dataBytes = data.map(_serialize_double_vector)
+ dataBytes._bypass_serializer = True
+ dataBytes.cache()
+ return dataBytes;
+
+# If we weren't given initial weights, take a zero vector of the appropriate
+# length.
+def _get_initial_weights(initial_weights, data):
+ if initial_weights is None:
+ initial_weights = data.first()
+ if type(initial_weights) != ndarray:
+ raise TypeError("At least one data element has type "
+ + type(initial_weights) + " which is not ndarray")
+ if initial_weights.ndim != 1:
+ raise TypeError("At least one data element has "
+ + initial_weights.ndim + " dimensions, which is not 1")
+ initial_weights = zeros([initial_weights.shape[0] - 1]);
+ return initial_weights;
+
+# train_func should take two parameters, namely data and initial_weights, and
+# return the result of a call to the appropriate JVM stub.
+# _regression_train_wrapper is responsible for setup and error checking.
+def _regression_train_wrapper(sc, train_func, klass, data, initial_weights):
+ initial_weights = _get_initial_weights(initial_weights, data)
+ dataBytes = _get_unmangled_double_vector_rdd(data)
+ ans = train_func(dataBytes, _serialize_double_vector(initial_weights))
+ if len(ans) != 2:
+ raise RuntimeError("JVM call result had unexpected length");
+ elif type(ans[0]) != bytearray:
+ raise RuntimeError("JVM call result had first element of type "
+ + type(ans[0]) + " which is not bytearray");
+ elif type(ans[1]) != float:
+ raise RuntimeError("JVM call result had second element of type "
+ + type(ans[0]) + " which is not float");
+ return klass(_deserialize_double_vector(ans[0]), ans[1]);
+
+class LinearRegressionModel(LinearModel):
@classmethod
- def train(cls, sc, data):
+ def train(cls, sc, data, iterations=100, step=1.0,
+ mini_batch_fraction=1.0, initial_weights=None):
"""Train a linear regression model on the given data."""
- dataBytes = data.map(_serialize_double_vector)
- dataBytes._bypass_serializer = True
- dataBytes.cache()
- api = sc._jvm.PythonMLLibAPI()
- ans = api.trainLinearRegressionModel(dataBytes._jrdd)
- if (len(ans) != 2 or type(ans[0]) != bytearray
- or type(ans[1]) != float):
- raise RuntimeError("train_linear_regression_model received "
- "garbage from JVM")
- return LinearRegressionModel(_deserialize_double_vector(ans[0]), ans[1])
+ return _regression_train_wrapper(sc, lambda d, i:
+ sc._jvm.PythonMLLibAPI().trainLinearRegressionModel(
+ d._jrdd, iterations, step, mini_batch_fraction, i),
+ LinearRegressionModel, data, initial_weights)
+
+class LassoModel(LinearModel):
+ @classmethod
+ def train(cls, sc, data, iterations=100, step=1.0, reg_param=1.0,
+ mini_batch_fraction=1.0, initial_weights=None):
+ """Train a Lasso regression model on the given data."""
+ return _regression_train_wrapper(sc, lambda d, i:
+ sc._jvm.PythonMLLibAPI().trainLassoModel(d._jrdd,
+ iterations, step, reg_param, mini_batch_fraction, i),
+ LassoModel, data, initial_weights)
+
+class RidgeRegressionModel(LinearModel):
+ @classmethod
+ def train(cls, sc, data, iterations=100, step=1.0, reg_param=1.0,
+ mini_batch_fraction=1.0, initial_weights=None):
+ """Train a ridge regression model on the given data."""
+ return _regression_train_wrapper(sc, lambda d, i:
+ sc._jvm.PythonMLLibAPI().trainRidgeModel(d._jrdd,
+ iterations, step, reg_param, mini_batch_fraction, i),
+ RidgeRegressionModel, data, initial_weights)