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authorKazuaki Ishizaki <ishizaki@jp.ibm.com>2016-09-27 14:18:32 +0800
committerWenchen Fan <wenchen@databricks.com>2016-09-27 14:18:32 +0800
commit85b0a157543201895557d66306b38b3ca52f2151 (patch)
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[SPARK-15962][SQL] Introduce implementation with a dense format for UnsafeArrayData
## What changes were proposed in this pull request? This PR introduces more compact representation for ```UnsafeArrayData```. ```UnsafeArrayData``` needs to accept ```null``` value in each entry of an array. In the current version, it has three parts ``` [numElements] [offsets] [values] ``` `Offsets` has the number of `numElements`, and represents `null` if its value is negative. It may increase memory footprint, and introduces an indirection for accessing each of `values`. This PR uses bitvectors to represent nullability for each element like `UnsafeRow`, and eliminates an indirection for accessing each element. The new ```UnsafeArrayData``` has four parts. ``` [numElements][null bits][values or offset&length][variable length portion] ``` In the `null bits` region, we store 1 bit per element, represents whether an element is null. Its total size is ceil(numElements / 8) bytes, and it is aligned to 8-byte boundaries. In the `values or offset&length` region, we store the content of elements. For fields that hold fixed-length primitive types, such as long, double, or int, we store the value directly in the field. For fields with non-primitive or variable-length values, we store a relative offset (w.r.t. the base address of the array) that points to the beginning of the variable-length field and length (they are combined into a long). Each is word-aligned. For `variable length portion`, each is aligned to 8-byte boundaries. The new format can reduce memory footprint and improve performance of accessing each element. An example of memory foot comparison: 1024x1024 elements integer array Size of ```baseObject``` for ```UnsafeArrayData```: 8 + 1024x1024 + 1024x1024 = 2M bytes Size of ```baseObject``` for ```UnsafeArrayData```: 8 + 1024x1024/8 + 1024x1024 = 1.25M bytes In summary, we got 1.0-2.6x performance improvements over the code before applying this PR. Here are performance results of [benchmark programs](https://github.com/kiszk/spark/blob/04d2e4b6dbdc4eff43ce18b3c9b776e0129257c7/sql/core/src/test/scala/org/apache/spark/sql/execution/benchmark/UnsafeArrayDataBenchmark.scala): **Read UnsafeArrayData**: 1.7x and 1.6x performance improvements over the code before applying this PR ```` OpenJDK 64-Bit Server VM 1.8.0_91-b14 on Linux 4.4.11-200.fc22.x86_64 Intel Xeon E3-12xx v2 (Ivy Bridge) Without SPARK-15962 Read UnsafeArrayData: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 430 / 436 390.0 2.6 1.0X Double 456 / 485 367.8 2.7 0.9X With SPARK-15962 Read UnsafeArrayData: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 252 / 260 666.1 1.5 1.0X Double 281 / 292 597.7 1.7 0.9X ```` **Write UnsafeArrayData**: 1.0x and 1.1x performance improvements over the code before applying this PR ```` OpenJDK 64-Bit Server VM 1.8.0_91-b14 on Linux 4.0.4-301.fc22.x86_64 Intel Xeon E3-12xx v2 (Ivy Bridge) Without SPARK-15962 Write UnsafeArrayData: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 203 / 273 103.4 9.7 1.0X Double 239 / 356 87.9 11.4 0.8X With SPARK-15962 Write UnsafeArrayData: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 196 / 249 107.0 9.3 1.0X Double 227 / 367 92.3 10.8 0.9X ```` **Get primitive array from UnsafeArrayData**: 2.6x and 1.6x performance improvements over the code before applying this PR ```` OpenJDK 64-Bit Server VM 1.8.0_91-b14 on Linux 4.0.4-301.fc22.x86_64 Intel Xeon E3-12xx v2 (Ivy Bridge) Without SPARK-15962 Get primitive array from UnsafeArrayData: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 207 / 217 304.2 3.3 1.0X Double 257 / 363 245.2 4.1 0.8X With SPARK-15962 Get primitive array from UnsafeArrayData: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 151 / 198 415.8 2.4 1.0X Double 214 / 394 293.6 3.4 0.7X ```` **Create UnsafeArrayData from primitive array**: 1.7x and 2.1x performance improvements over the code before applying this PR ```` OpenJDK 64-Bit Server VM 1.8.0_91-b14 on Linux 4.0.4-301.fc22.x86_64 Intel Xeon E3-12xx v2 (Ivy Bridge) Without SPARK-15962 Create UnsafeArrayData from primitive array: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 340 / 385 185.1 5.4 1.0X Double 479 / 705 131.3 7.6 0.7X With SPARK-15962 Create UnsafeArrayData from primitive array: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ Int 206 / 211 306.0 3.3 1.0X Double 232 / 406 271.6 3.7 0.9X ```` 1.7x and 1.4x performance improvements in [```UDTSerializationBenchmark```](https://github.com/apache/spark/blob/master/mllib/src/test/scala/org/apache/spark/mllib/linalg/UDTSerializationBenchmark.scala) over the code before applying this PR ```` OpenJDK 64-Bit Server VM 1.8.0_91-b14 on Linux 4.4.11-200.fc22.x86_64 Intel Xeon E3-12xx v2 (Ivy Bridge) Without SPARK-15962 VectorUDT de/serialization: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ serialize 442 / 533 0.0 441927.1 1.0X deserialize 217 / 274 0.0 217087.6 2.0X With SPARK-15962 VectorUDT de/serialization: Best/Avg Time(ms) Rate(M/s) Per Row(ns) Relative ------------------------------------------------------------------------------------------------ serialize 265 / 318 0.0 265138.5 1.0X deserialize 155 / 197 0.0 154611.4 1.7X ```` ## How was this patch tested? Added unit tests into ```UnsafeArraySuite``` Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Closes #13680 from kiszk/SPARK-15962.
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