[SPARK-1900 / 1918] PySpark on YARN is broken

If I run the following on a YARN cluster
```
bin/spark-submit sheep.py --master yarn-client
```
it fails because of a mismatch in paths: `spark-submit` thinks that `sheep.py` resides on HDFS, and balks when it can't find the file there. A natural workaround is to add the `file:` prefix to the file:
```
bin/spark-submit file:/path/to/sheep.py --master yarn-client
```
However, this also fails. This time it is because python does not understand URI schemes.

This PR fixes this by automatically resolving all paths passed as command line argument to `spark-submit` properly. This has the added benefit of keeping file and jar paths consistent across different cluster modes. For python, we strip the URI scheme before we actually try to run it.

Much of the code is originally written by @mengxr. Tested on YARN cluster. More tests pending.

Author: Andrew Or <andrewor14@gmail.com>

Closes #853 from andrewor14/submit-paths and squashes the following commits:

0bb097a [Andrew Or] Format path correctly before adding it to PYTHONPATH
323b45c [Andrew Or] Include --py-files on PYTHONPATH for pyspark shell
3c36587 [Andrew Or] Improve error messages (minor)
854aa6a [Andrew Or] Guard against NPE if user gives pathological paths
6638a6b [Andrew Or] Fix spark-shell jar paths after #849 went in
3bb0359 [Andrew Or] Update more comments (minor)
2a1f8a0 [Andrew Or] Update comments (minor)
6af2c77 [Andrew Or] Merge branch 'master' of github.com:apache/spark into submit-paths
a68c4d1 [Andrew Or] Handle Windows python file path correctly
427a250 [Andrew Or] Resolve paths properly for Windows
a591a4a [Andrew Or] Update tests for resolving URIs
6c8621c [Andrew Or] Move resolveURIs to Utils
db8255e [Andrew Or] Merge branch 'master' of github.com:apache/spark into submit-paths
f542dce [Andrew Or] Fix outdated tests
691c4ce [Andrew Or] Ignore special primary resource names
5342ac7 [Andrew Or] Add missing space in error message
02f77f3 [Andrew Or] Resolve command line arguments to spark-submit properly

1 files changed, 3 insertions, 2 deletions

diff --git a/repl/src/main/scala/org/apache/spark/repl/SparkILoop.scala b/repl/src/main/scala/org/apache/spark/repl/SparkILoop.scala
index 5f34362ccd..e1db4d5395 100644
--- a/repl/src/main/scala/org/apache/spark/repl/SparkILoop.scala
+++ b/repl/src/main/scala/org/apache/spark/repl/SparkILoop.scala
@@ -942,7 +942,7 @@ class SparkILoop(in0: Option[BufferedReader], protected val out: JPrintWriter,
 
   def createSparkContext(): SparkContext = {
     val execUri = System.getenv("SPARK_EXECUTOR_URI")
-    val jars = SparkILoop.getAddedJars.map(new java.io.File(_).getAbsolutePath)
+    val jars = SparkILoop.getAddedJars
     val conf = new SparkConf()
       .setMaster(getMaster())
       .setAppName("Spark shell")
@@ -997,7 +997,8 @@ object SparkILoop {
     val propJars = sys.props.get("spark.jars").flatMap { p =>
       if (p == "") None else Some(p)
     }
-    propJars.orElse(envJars).map(_.split(",")).getOrElse(Array.empty)
+    val jars = propJars.orElse(envJars).getOrElse("")
+    Utils.resolveURIs(jars).split(",").filter(_.nonEmpty)
   }
 
   // Designed primarily for use by test code: take a String with a