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-rw-r--r--mllib/src/main/scala/org/apache/spark/ml/r/NaiveBayesWrapper.scala75
1 files changed, 75 insertions, 0 deletions
diff --git a/mllib/src/main/scala/org/apache/spark/ml/r/NaiveBayesWrapper.scala b/mllib/src/main/scala/org/apache/spark/ml/r/NaiveBayesWrapper.scala
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+++ b/mllib/src/main/scala/org/apache/spark/ml/r/NaiveBayesWrapper.scala
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+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.ml.r
+
+import org.apache.spark.ml.{Pipeline, PipelineModel}
+import org.apache.spark.ml.attribute.{Attribute, AttributeGroup, NominalAttribute}
+import org.apache.spark.ml.classification.{NaiveBayes, NaiveBayesModel}
+import org.apache.spark.ml.feature.{IndexToString, RFormula}
+import org.apache.spark.sql.DataFrame
+
+private[r] class NaiveBayesWrapper private (
+ pipeline: PipelineModel,
+ val labels: Array[String],
+ val features: Array[String]) {
+
+ import NaiveBayesWrapper._
+
+ private val naiveBayesModel: NaiveBayesModel = pipeline.stages(1).asInstanceOf[NaiveBayesModel]
+
+ lazy val apriori: Array[Double] = naiveBayesModel.pi.toArray.map(math.exp)
+
+ lazy val tables: Array[Double] = naiveBayesModel.theta.toArray.map(math.exp)
+
+ def transform(dataset: DataFrame): DataFrame = {
+ pipeline.transform(dataset).drop(PREDICTED_LABEL_INDEX_COL)
+ }
+}
+
+private[r] object NaiveBayesWrapper {
+
+ val PREDICTED_LABEL_INDEX_COL = "pred_label_idx"
+ val PREDICTED_LABEL_COL = "prediction"
+
+ def fit(formula: String, data: DataFrame, laplace: Double): NaiveBayesWrapper = {
+ val rFormula = new RFormula()
+ .setFormula(formula)
+ .fit(data)
+ // get labels and feature names from output schema
+ val schema = rFormula.transform(data).schema
+ val labelAttr = Attribute.fromStructField(schema(rFormula.getLabelCol))
+ .asInstanceOf[NominalAttribute]
+ val labels = labelAttr.values.get
+ val featureAttrs = AttributeGroup.fromStructField(schema(rFormula.getFeaturesCol))
+ .attributes.get
+ val features = featureAttrs.map(_.name.get)
+ // assemble and fit the pipeline
+ val naiveBayes = new NaiveBayes()
+ .setSmoothing(laplace)
+ .setModelType("bernoulli")
+ .setPredictionCol(PREDICTED_LABEL_INDEX_COL)
+ val idxToStr = new IndexToString()
+ .setInputCol(PREDICTED_LABEL_INDEX_COL)
+ .setOutputCol(PREDICTED_LABEL_COL)
+ .setLabels(labels)
+ val pipeline = new Pipeline()
+ .setStages(Array(rFormula, naiveBayes, idxToStr))
+ .fit(data)
+ new NaiveBayesWrapper(pipeline, labels, features)
+ }
+}