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* SPARK-1879. Increase MaxPermSize since some of our builds have many classesMatei Zaharia2014-05-193-5/+7
| | | | | | | | | | | | See https://issues.apache.org/jira/browse/SPARK-1879 -- builds with Hadoop2 and Hive ran out of PermGen space in spark-shell, when those things added up with the Scala compiler. Note that users can still override it by setting their own Java options with this change. Their options will come later in the command string than the -XX:MaxPermSize=128m. Author: Matei Zaharia <matei@databricks.com> Closes #823 from mateiz/spark-1879 and squashes the following commits: 6bc0ee8 [Matei Zaharia] Increase MaxPermSize to 128m since some of our builds have lots of classes
* SPARK-1878: Fix the incorrect initialization orderzsxwing2014-05-192-3/+7
| | | | | | | | | | JIRA: https://issues.apache.org/jira/browse/SPARK-1878 Author: zsxwing <zsxwing@gmail.com> Closes #822 from zsxwing/SPARK-1878 and squashes the following commits: 4a47e27 [zsxwing] SPARK-1878: Fix the incorrect initialization order
* [SPARK-1876] Windows fixes to deal with latest distribution layout changesMatei Zaharia2014-05-197-30/+81
| | | | | | | | | | | | | | | | | - Look for JARs in the right place - Launch examples the same way as on Unix - Load datanucleus JARs if they exist - Don't attempt to parse local paths as URIs in SparkSubmit, since paths with C:\ are not valid URIs - Also fixed POM exclusion rules for datanucleus (it wasn't properly excluding it, whereas SBT was) Author: Matei Zaharia <matei@databricks.com> Closes #819 from mateiz/win-fixes and squashes the following commits: d558f96 [Matei Zaharia] Fix comment 228577b [Matei Zaharia] Review comments d3b71c7 [Matei Zaharia] Properly exclude datanucleus files in Maven assembly 144af84 [Matei Zaharia] Update Windows scripts to match latest binary package layout
* [WIP][SPARK-1871][MLLIB] Improve MLlib guide for v1.0Xiangrui Meng2014-05-1810-90/+153
| | | | | | | | | | | | | | | | | | | | | | | | Some improvements to MLlib guide: 1. [SPARK-1872] Update API links for unidoc. 2. [SPARK-1783] Added `page.displayTitle` to the global layout. If it is defined, use it instead of `page.title` for title display. 3. Add more Java/Python examples. Author: Xiangrui Meng <meng@databricks.com> Closes #816 from mengxr/mllib-doc and squashes the following commits: ec2e407 [Xiangrui Meng] format scala example for ALS cd9f40b [Xiangrui Meng] add a paragraph to summarize distributed matrix types 4617f04 [Xiangrui Meng] add python example to loadLibSVMFile and fix Java example d6509c2 [Xiangrui Meng] [SPARK-1783] update mllib titles 561fdc0 [Xiangrui Meng] add a displayTitle option to global layout 195d06f [Xiangrui Meng] add Java example for summary stats and minor fix 9f1ff89 [Xiangrui Meng] update java api links in mllib-basics 7dad18e [Xiangrui Meng] update java api links in NB 3a0f4a6 [Xiangrui Meng] api/pyspark -> api/python 35bdeb9 [Xiangrui Meng] api/mllib -> api/scala e4afaa8 [Xiangrui Meng] explicity state what might change
* SPARK-1873: Add README.md file when making distributionsPatrick Wendell2014-05-181-0/+1
| | | | | | | | Author: Patrick Wendell <pwendell@gmail.com> Closes #818 from pwendell/reamde and squashes the following commits: 4020b11 [Patrick Wendell] SPARK-1873: Add README.md file when making distributions
* Fix spark-submit path in spark-shell & pysparkNeville Li2014-05-182-5/+5
| | | | | | | | | Author: Neville Li <neville@spotify.com> Closes #812 from nevillelyh/neville/v1.0 and squashes the following commits: 0dc33ed [Neville Li] Fix spark-submit path in pyspark becec64 [Neville Li] Fix spark-submit path in spark-shell
* Make deprecation warning less severePatrick Wendell2014-05-161-6/+6
| | | | | | | | | | Just a small change. I think it's good not to scare people who are using the old options. Author: Patrick Wendell <pwendell@gmail.com> Closes #810 from pwendell/warnings and squashes the following commits: cb8a311 [Patrick Wendell] Make deprecation warning less severe
* [SPARK-1824] Remove <master> from Python examplesAndrew Or2014-05-1612-72/+77
| | | | | | | | | | | | | | | | | | | | | A recent PR (#552) fixed this for all Scala / Java examples. We need to do it for python too. Note that this blocks on #799, which makes `bin/pyspark` go through Spark submit. With only the changes in this PR, the only way to run these examples is through Spark submit. Once #799 goes in, you can use `bin/pyspark` to run them too. For example, ``` bin/pyspark examples/src/main/python/pi.py 100 --master local-cluster[4,1,512] ``` Author: Andrew Or <andrewor14@gmail.com> Closes #802 from andrewor14/python-examples and squashes the following commits: cf50b9f [Andrew Or] De-indent python comments (minor) 50f80b1 [Andrew Or] Remove pyFiles from SparkContext construction c362f69 [Andrew Or] Update docs to use spark-submit for python applications 7072c6a [Andrew Or] Merge branch 'master' of github.com:apache/spark into python-examples 427a5f0 [Andrew Or] Update docs d32072c [Andrew Or] Remove <master> from examples + update usages
* [SPARK-1808] Route bin/pyspark through Spark submitAndrew Or2014-05-1610-34/+107
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | **Problem.** For `bin/pyspark`, there is currently no other way to specify Spark configuration properties other than through `SPARK_JAVA_OPTS` in `conf/spark-env.sh`. However, this mechanism is supposedly deprecated. Instead, it needs to pick up configurations explicitly specified in `conf/spark-defaults.conf`. **Solution.** Have `bin/pyspark` invoke `bin/spark-submit`, like all of its counterparts in Scala land (i.e. `bin/spark-shell`, `bin/run-example`). This has the additional benefit of making the invocation of all the user facing Spark scripts consistent. **Details.** `bin/pyspark` inherently handles two cases: (1) running python applications and (2) running the python shell. For (1), Spark submit already handles running python applications. For cases in which `bin/pyspark` is given a python file, we can simply call pass the file directly to Spark submit and let it handle the rest. For case (2), `bin/pyspark` starts a python process as before, which launches the JVM as a sub-process. The existing code already provides a code path to do this. All we needed to change is to use `bin/spark-submit` instead of `spark-class` to launch the JVM. This requires modifications to Spark submit to handle the pyspark shell as a special case. This has been tested locally (OSX and Windows 7), on a standalone cluster, and on a YARN cluster. Running IPython also works as before, except now it takes in Spark submit arguments too. Author: Andrew Or <andrewor14@gmail.com> Closes #799 from andrewor14/pyspark-submit and squashes the following commits: bf37e36 [Andrew Or] Minor changes 01066fa [Andrew Or] bin/pyspark for Windows c8cb3bf [Andrew Or] Handle perverse app names (with escaped quotes) 1866f85 [Andrew Or] Windows is not cooperating 456d844 [Andrew Or] Guard against shlex hanging if PYSPARK_SUBMIT_ARGS is not set 7eebda8 [Andrew Or] Merge branch 'master' of github.com:apache/spark into pyspark-submit b7ba0d8 [Andrew Or] Address a few comments (minor) 06eb138 [Andrew Or] Use shlex instead of writing our own parser 05879fa [Andrew Or] Merge branch 'master' of github.com:apache/spark into pyspark-submit a823661 [Andrew Or] Fix --die-on-broken-pipe not propagated properly 6fba412 [Andrew Or] Deal with quotes + address various comments fe4c8a7 [Andrew Or] Update --help for bin/pyspark afe47bf [Andrew Or] Fix spark shell f04aaa4 [Andrew Or] Merge branch 'master' of github.com:apache/spark into pyspark-submit a371d26 [Andrew Or] Route bin/pyspark through Spark submit
* Version bump of spark-ec2 scriptsPatrick Wendell2014-05-161-1/+1
| | | | | | | | | | This will allow us to change things in spark-ec2 related to the 1.0 release. Author: Patrick Wendell <pwendell@gmail.com> Closes #809 from pwendell/spark-ec2 and squashes the following commits: 59117fb [Patrick Wendell] Version bump of spark-ec2 scripts
* SPARK-1864 Look in spark conf instead of system properties when propagating ↵Michael Armbrust2014-05-161-4/+5
| | | | | | | | | | configuration to executors. Author: Michael Armbrust <michael@databricks.com> Closes #808 from marmbrus/confClasspath and squashes the following commits: 4c31d57 [Michael Armbrust] Look in spark conf instead of system properties when propagating configuration to executors.
* Tweaks to Mesos docsMatei Zaharia2014-05-161-37/+34
| | | | | | | | | | | | - Mention Apache downloads first - Shorten some wording Author: Matei Zaharia <matei@databricks.com> Closes #806 from mateiz/doc-update and squashes the following commits: d9345cd [Matei Zaharia] typo a179f8d [Matei Zaharia] Tweaks to Mesos docs
* SPARK-1487 [SQL] Support record filtering via predicate pushdown in ParquetAndre Schumacher2014-05-165-51/+731
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Simple filter predicates such as LessThan, GreaterThan, etc., where one side is a literal and the other one a NamedExpression are now pushed down to the underlying ParquetTableScan. Here are some results for a microbenchmark with a simple schema of six fields of different types where most records failed the test: | Uncompressed | Compressed -------------| ------------- | ------------- File size | 10 GB | 2 GB Speedup | 2 | 1.8 Since mileage may vary I added a new option to SparkConf: `org.apache.spark.sql.parquet.filter.pushdown` Default value would be `true` and setting it to `false` disables the pushdown. When most rows are expected to pass the filter or when there are few fields performance can be better when pushdown is disabled. The default should fit situations with a reasonable number of (possibly nested) fields where not too many records on average pass the filter. Because of an issue with Parquet ([see here](https://github.com/Parquet/parquet-mr/issues/371])) currently only predicates on non-nullable attributes are pushed down. If one would know that for a given table no optional fields have missing values one could also allow overriding this. Author: Andre Schumacher <andre.schumacher@iki.fi> Closes #511 from AndreSchumacher/parquet_filter and squashes the following commits: 16bfe83 [Andre Schumacher] Removing leftovers from merge during rebase 7b304ca [Andre Schumacher] Fixing formatting c36d5cb [Andre Schumacher] Scalastyle 3da98db [Andre Schumacher] Second round of review feedback 7a78265 [Andre Schumacher] Fixing broken formatting in ParquetFilter a86553b [Andre Schumacher] First round of code review feedback b0f7806 [Andre Schumacher] Optimizing imports in ParquetTestData 85fea2d [Andre Schumacher] Adding SparkConf setting to disable filter predicate pushdown f0ad3cf [Andre Schumacher] Undoing changes not needed for this PR 210e9cb [Andre Schumacher] Adding disjunctive filter predicates a93a588 [Andre Schumacher] Adding unit test for filtering 6d22666 [Andre Schumacher] Extending ParquetFilters 93e8192 [Andre Schumacher] First commit Parquet record filtering
* [SQL] Implement between in hqlMichael Armbrust2014-05-163-0/+21
| | | | | | | | | | Author: Michael Armbrust <michael@databricks.com> Closes #804 from marmbrus/between and squashes the following commits: ae24672 [Michael Armbrust] add golden answer. d9997ef [Michael Armbrust] Implement between in hql. 9bd4433 [Michael Armbrust] Better error on parse failures.
* bugfix: overflow of graphx Edge compare functionZhen Peng2014-05-162-2/+47
| | | | | | | | | Author: Zhen Peng <zhenpeng01@baidu.com> Closes #769 from zhpengg/bugfix-graphx-edge-compare and squashes the following commits: 8a978ff [Zhen Peng] add ut for graphx Edge.lexicographicOrdering.compare 413c258 [Zhen Peng] there maybe a overflow for two Long's substraction
* HOTFIX: Duplication of hbase versionPatrick Wendell2014-05-151-1/+0
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* SPARK-1862: Support for MapR in the Maven build.Patrick Wendell2014-05-151-1/+35
| | | | | | | | Author: Patrick Wendell <pwendell@gmail.com> Closes #803 from pwendell/mapr-support and squashes the following commits: 8df60e4 [Patrick Wendell] SPARK-1862: Support for MapR in the Maven build.
* [Spark-1461] Deferred Expression Evaluation (short-circuit evaluation)Cheng Hao2014-05-152-22/+53
| | | | | | | | | | | | | | | | | This patch unify the foldable & nullable interface for Expression. 1) Deterministic-less UDF (like Rand()) can not be folded. 2) Short-circut will significantly improves the performance in Expression Evaluation, however, the stateful UDF should not be ignored in a short-circuit evaluation(e.g. in expression: col1 > 0 and row_sequence() < 1000, row_sequence() can not be ignored even if col1 > 0 is false) I brought an concept of DeferredObject from Hive, which has 2 kinds of children classes (EagerResult / DeferredResult), the former requires triggering the evaluation before it's created, while the later trigger the evaluation when first called its get() method. Author: Cheng Hao <hao.cheng@intel.com> Closes #446 from chenghao-intel/expression_deferred_evaluation and squashes the following commits: d2729de [Cheng Hao] Fix the codestyle issues a08f09c [Cheng Hao] fix bug in or/and short-circuit evaluation af2236b [Cheng Hao] revert the short-circuit expression evaluation for IF b7861d2 [Cheng Hao] Add Support for Deferred Expression Evaluation
* SPARK-1860: Do not cleanup application work/ directories by defaultAaron Davidson2014-05-152-3/+4
| | | | | | | | | | | | This causes an unrecoverable error for applications that are running for longer than 7 days that have jars added to the SparkContext, as the jars are cleaned up even though the application is still running. Author: Aaron Davidson <aaron@databricks.com> Closes #800 from aarondav/shitty-defaults and squashes the following commits: a573fbb [Aaron Davidson] SPARK-1860: Do not cleanup application work/ directories by default
* Typos in SparkHuajian Mao2014-05-152-2/+2
| | | | | | | | | Author: Huajian Mao <huajianmao@gmail.com> Closes #798 from huajianmao/patch-1 and squashes the following commits: 208a454 [Huajian Mao] A typo in Task 1b515af [Huajian Mao] A typo in the message
* Fixes a misplaced comment.Prashant Sharma2014-05-151-2/+2
| | | | | | | | | | | | | Fixes a misplaced comment from #785. @pwendell Author: Prashant Sharma <prashant.s@imaginea.com> Closes #788 from ScrapCodes/patch-1 and squashes the following commits: 3ef6a69 [Prashant Sharma] Update package-info.java 67d9461 [Prashant Sharma] Update package-info.java
* [SQL] Fix tiny/small ints from HiveMetastore.Michael Armbrust2014-05-151-2/+4
| | | | | | | | Author: Michael Armbrust <michael@databricks.com> Closes #797 from marmbrus/smallInt and squashes the following commits: 2db9dae [Michael Armbrust] Fix tiny/small ints from HiveMetastore.
* SPARK-1803 Replaced colon in filenames with a dashStevo Slavić2014-05-1516-15/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | This patch replaces colon in several filenames with dash to make these filenames Windows compatible. Author: Stevo Slavić <sslavic@gmail.com> Author: Stevo Slavic <sslavic@gmail.com> Closes #739 from sslavic/SPARK-1803 and squashes the following commits: 3ec66eb [Stevo Slavic] Removed extra empty line which was causing test to fail b967cc3 [Stevo Slavić] Aligned tests and names of test resources 2b12776 [Stevo Slavić] Fixed a typo in file name 1c5dfff [Stevo Slavić] Replaced colon in file name with dash 8f5bf7f [Stevo Slavić] Replaced colon in file name with dash c5b5083 [Stevo Slavić] Replaced colon in file name with dash a49801f [Stevo Slavić] Replaced colon in file name with dash 401d99e [Stevo Slavić] Replaced colon in file name with dash 40a9621 [Stevo Slavić] Replaced colon in file name with dash 4774580 [Stevo Slavić] Replaced colon in file name with dash 004f8bb [Stevo Slavić] Replaced colon in file name with dash d6a3e2c [Stevo Slavić] Replaced colon in file name with dash b585126 [Stevo Slavić] Replaced colon in file name with dash 028e48a [Stevo Slavić] Replaced colon in file name with dash ece0507 [Stevo Slavić] Replaced colon in file name with dash 84f5d2f [Stevo Slavić] Replaced colon in file name with dash 2fc7854 [Stevo Slavić] Replaced colon in file name with dash 9e1467d [Stevo Slavić] Replaced colon in file name with dash
* SPARK-1851. Upgrade Avro dependency to 1.7.6 so Spark can read Avro file...Sandy Ryza2014-05-151-1/+1
| | | | | | | | | | ...s Author: Sandy Ryza <sandy@cloudera.com> Closes #795 from sryza/sandy-spark-1851 and squashes the following commits: 79c8227 [Sandy Ryza] SPARK-1851. Upgrade Avro dependency to 1.7.6 so Spark can read Avro files
* [SPARK-1741][MLLIB] add predict(JavaRDD) to RegressionModel, ↵Xiangrui Meng2014-05-156-2/+76
| | | | | | | | | | | | | | | | | | | ClassificationModel, and KMeans `model.predict` returns a RDD of Scala primitive type (Int/Double), which is recognized as Object in Java. Adding predict(JavaRDD) could make life easier for Java users. Added tests for KMeans, LinearRegression, and NaiveBayes. Will update examples after https://github.com/apache/spark/pull/653 gets merged. cc: @srowen Author: Xiangrui Meng <meng@databricks.com> Closes #670 from mengxr/predict-javardd and squashes the following commits: b77ccd8 [Xiangrui Meng] Merge branch 'master' into predict-javardd 43caac9 [Xiangrui Meng] add predict(JavaRDD) to RegressionModel, ClassificationModel, and KMeans
* [SPARK-1819] [SQL] Fix GetField.nullable.Takuya UESHIN2014-05-152-1/+14
| | | | | | | | | | | `GetField.nullable` should be `true` not only when `field.nullable` is `true` but also when `child.nullable` is `true`. Author: Takuya UESHIN <ueshin@happy-camper.st> Closes #757 from ueshin/issues/SPARK-1819 and squashes the following commits: 8781a11 [Takuya UESHIN] Modify a test to use named parameters. 5bfc77d [Takuya UESHIN] Fix GetField.nullable.
* [SPARK-1845] [SQL] Use AllScalaRegistrar for SparkSqlSerializer to register ↵Takuya UESHIN2014-05-154-26/+66
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | serializers of ... ...Scala collections. When I execute `orderBy` or `limit` for `SchemaRDD` including `ArrayType` or `MapType`, `SparkSqlSerializer` throws the following exception: ``` com.esotericsoftware.kryo.KryoException: Class cannot be created (missing no-arg constructor): scala.collection.immutable.$colon$colon ``` or ``` com.esotericsoftware.kryo.KryoException: Class cannot be created (missing no-arg constructor): scala.collection.immutable.Vector ``` or ``` com.esotericsoftware.kryo.KryoException: Class cannot be created (missing no-arg constructor): scala.collection.immutable.HashMap$HashTrieMap ``` and so on. This is because registrations of serializers for each concrete collections are missing in `SparkSqlSerializer`. I believe it should use `AllScalaRegistrar`. `AllScalaRegistrar` covers a lot of serializers for concrete classes of `Seq`, `Map` for `ArrayType`, `MapType`. Author: Takuya UESHIN <ueshin@happy-camper.st> Closes #790 from ueshin/issues/SPARK-1845 and squashes the following commits: d1ed992 [Takuya UESHIN] Use AllScalaRegistrar for SparkSqlSerializer to register serializers of Scala collections.
* SPARK-1846 Ignore logs directory in RAT checksAndrew Ash2014-05-151-0/+1
| | | | | | | | | | https://issues.apache.org/jira/browse/SPARK-1846 Author: Andrew Ash <andrew@andrewash.com> Closes #793 from ash211/SPARK-1846 and squashes the following commits: 3f50db5 [Andrew Ash] SPARK-1846 Ignore logs directory in RAT checks
* HOTFIX: Don't build Javadoc in Maven when creating releases.Patrick Wendell2014-05-151-2/+4
| | | | | | | | | | Because we've added java package descriptions in some packages that don't have any Java files, running the Javadoc target hits this issue: http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=4492654 To fix this I've simply removed the javadoc target when publishing releases.
* fix different versions of commons-lang dependency and apache/spark#746 addendumwitgo2014-05-142-5/+15
| | | | | | | | | | | | Author: witgo <witgo@qq.com> Closes #754 from witgo/commons-lang and squashes the following commits: 3ebab31 [witgo] merge master f3b8fa2 [witgo] merge master 2083fae [witgo] repeat definition 5599cdb [witgo] multiple version of sbt dependency c1b66a1 [witgo] fix different versions of commons-lang dependency
* Package docsPrashant Sharma2014-05-1451-1/+1116
| | | | | | | | | | | | | | This is a few changes based on the original patch by @scrapcodes. Author: Prashant Sharma <prashant.s@imaginea.com> Author: Patrick Wendell <pwendell@gmail.com> Closes #785 from pwendell/package-docs and squashes the following commits: c32b731 [Patrick Wendell] Changes based on Prashant's patch c0463d3 [Prashant Sharma] added eof new line ce8bf73 [Prashant Sharma] Added eof new line to all files. 4c35f2e [Prashant Sharma] SPARK-1563 Add package-info.java and package.scala files for all packages that appear in docs
* Documentation: Encourage use of reduceByKey instead of groupByKey.Patrick Wendell2014-05-144-0/+32
| | | | | | | | | Author: Patrick Wendell <pwendell@gmail.com> Closes #784 from pwendell/group-by-key and squashes the following commits: 9b4505f [Patrick Wendell] Small fix 6347924 [Patrick Wendell] Documentation: Encourage use of reduceByKey instead of groupByKey.
* Add language tabs and Python version to interactive part of quick-startMatei Zaharia2014-05-142-20/+133
| | | | | | | | | | | | | | This is an addition of some stuff that was missed in https://issues.apache.org/jira/browse/SPARK-1567. I've also updated the doc to show submitting the Python application with spark-submit. Author: Matei Zaharia <matei@databricks.com> Closes #782 from mateiz/spark-1567-extra and squashes the following commits: 6f8f2aa [Matei Zaharia] tweaks 9ed9874 [Matei Zaharia] tweaks ae67c3e [Matei Zaharia] tweak b303ba3 [Matei Zaharia] tweak 1433a4d [Matei Zaharia] Add language tabs and Python version to interactive part of quick-start guide
* [SPARK-1840] SparkListenerBus prints out scary error message when terminated ↵Tathagata Das2014-05-141-0/+2
| | | | | | | | | | | | | | | | | | normally Running SparkPi example gave this error. ``` Pi is roughly 3.14374 14/05/14 18:16:19 ERROR Utils: Uncaught exception in thread SparkListenerBus scala.runtime.NonLocalReturnControl$mcV$sp ``` This is due to the catch-all in the SparkListenerBus, which logged control throwable used by scala system Author: Tathagata Das <tathagata.das1565@gmail.com> Closes #783 from tdas/controlexception-fix and squashes the following commits: a466c8d [Tathagata Das] Ignored control exceptions when logging all exceptions.
* default task number misleading in several placesChen Chao2014-05-141-8/+10
| | | | | | | | | | | | | | | | | private[streaming] def defaultPartitioner(numPartitions: Int = self.ssc.sc.defaultParallelism){ new HashPartitioner(numPartitions) } it represents that the default task number in Spark Streaming relies on the variable defaultParallelism in SparkContext, which is decided by the config property spark.default.parallelism the property "spark.default.parallelism" refers to https://github.com/apache/spark/pull/389 Author: Chen Chao <crazyjvm@gmail.com> Closes #766 from CrazyJvm/patch-7 and squashes the following commits: 0b7efba [Chen Chao] Update streaming-programming-guide.md cc5b66c [Chen Chao] default task number misleading in several places
* [SPARK-1826] fix the head notation of package object dslwangfei2014-05-141-9/+12
| | | | | | | | | Author: wangfei <scnbwf@yeah.net> Closes #765 from scwf/dslfix and squashes the following commits: d2d1a9d [wangfei] Update package.scala 66ff53b [wangfei] fix the head notation of package object dsl
* [Typo] propertes -> propertiesandrewor142014-05-141-1/+1
| | | | | | | | Author: andrewor14 <andrewor14@gmail.com> Closes #780 from andrewor14/submit-typo and squashes the following commits: e70e057 [andrewor14] propertes -> properties
* [SPARK-1696][MLLIB] use alpha in dense dsprXiangrui Meng2014-05-141-1/+1
| | | | | | | | | | It doesn't affect existing code because only `alpha = 1.0` is used in the code. Author: Xiangrui Meng <meng@databricks.com> Closes #778 from mengxr/mllib-dspr-fix and squashes the following commits: a37402e [Xiangrui Meng] use alpha in dense dspr
* String interpolation + some other small changesJacek Laskowski2014-05-141-10/+8
| | | | | | | | | | After having been invited to make the change in https://github.com/apache/spark/commit/6bee01dd04ef73c6b829110ebcdd622d521ea8ff#commitcomment-6284165 by @witgo. Author: Jacek Laskowski <jacek@japila.pl> Closes #748 from jaceklaskowski/sparkenv-string-interpolation and squashes the following commits: be6ebac [Jacek Laskowski] String interpolation + some other small changes
* [FIX] do not load defaults when testing SparkConf in pysparkXiangrui Meng2014-05-141-1/+1
| | | | | | | | | | The default constructor loads default properties, which can fail the test. Author: Xiangrui Meng <meng@databricks.com> Closes #775 from mengxr/pyspark-conf-fix and squashes the following commits: 83ef6c4 [Xiangrui Meng] do not load defaults when testing SparkConf in pyspark
* SPARK-1833 - Have an empty SparkContext constructor.Patrick Wendell2014-05-141-0/+6
| | | | | | | | | | This is nicer than relying on new SparkContext(new SparkConf()) Author: Patrick Wendell <pwendell@gmail.com> Closes #774 from pwendell/spark-context and squashes the following commits: ef9f12f [Patrick Wendell] SPARK-1833 - Have an empty SparkContext constructor.
* SPARK-1829 Sub-second durations shouldn't round to "0 s"Andrew Ash2014-05-141-0/+6
| | | | | | | | | | | | | | | As "99 ms" up to 99 ms As "0.1 s" from 0.1 s up to 0.9 s https://issues.apache.org/jira/browse/SPARK-1829 Compare the first image to the second here: http://imgur.com/RaLEsSZ,7VTlgfo#0 Author: Andrew Ash <andrew@andrewash.com> Closes #768 from ash211/spark-1829 and squashes the following commits: 1c15b8e [Andrew Ash] SPARK-1829 Format sub-second durations more appropriately
* Fix: sbt test throw an java.lang.OutOfMemoryError: PermGen spacewitgo2014-05-142-0/+6
| | | | | | | | Author: witgo <witgo@qq.com> Closes #773 from witgo/sbt_javaOptions and squashes the following commits: 26c7d38 [witgo] Improve sbt configuration
* [SPARK-1620] Handle uncaught exceptions in function run by Akka schedulerMark Hamstra2014-05-145-18/+36
| | | | | | | | | | | | | | | | If the intended behavior was that uncaught exceptions thrown in functions being run by the Akka scheduler would end up being handled by the default uncaught exception handler set in Executor, and if that behavior is, in fact, correct, then this is a way to accomplish that. I'm not certain, though, that we shouldn't be doing something different to handle uncaught exceptions from some of these scheduled functions. In any event, this PR covers all of the cases I comment on in [SPARK-1620](https://issues.apache.org/jira/browse/SPARK-1620). Author: Mark Hamstra <markhamstra@gmail.com> Closes #622 from markhamstra/SPARK-1620 and squashes the following commits: 071d193 [Mark Hamstra] refactored post-SPARK-1772 1a6a35e [Mark Hamstra] another style fix d30eb94 [Mark Hamstra] scalastyle 3573ecd [Mark Hamstra] Use wrapped try/catch in Utils.tryOrExit 8fc0439 [Mark Hamstra] Make functions run by the Akka scheduler use Executor's UncaughtExceptionHandler
* SPARK-1828: Created forked version of hive-exec that doesn't bundle other ↵Patrick Wendell2014-05-142-6/+6
| | | | | | | | | | | | | | | dependencies See https://issues.apache.org/jira/browse/SPARK-1828 for more information. This is being submitted to Jenkin's for testing. The dependency won't fully propagate in Maven central for a few more hours. Author: Patrick Wendell <pwendell@gmail.com> Closes #767 from pwendell/hive-shaded and squashes the following commits: ea10ac5 [Patrick Wendell] SPARK-1828: Created forked version of hive-exec that doesn't bundle other dependencies
* SPARK-1818 Freshen Mesos documentationAndrew Ash2014-05-142-28/+174
| | | | | | | | | | | | | | | | | | | Place more emphasis on using precompiled binary versions of Spark and Mesos instead of encouraging the reader to compile from source. Author: Andrew Ash <andrew@andrewash.com> Closes #756 from ash211/spark-1818 and squashes the following commits: 7ef3b33 [Andrew Ash] Brief explanation of the interactions between Spark and Mesos e7dea8e [Andrew Ash] Add troubleshooting and debugging section 956362d [Andrew Ash] Don't need to pass spark.executor.uri into the spark shell de3353b [Andrew Ash] Wrap to 100char 7ebf6ef [Andrew Ash] Polish on the section on Mesos Master URLs 3dcc2c1 [Andrew Ash] Use --tgz parameter of make-distribution 41b68ed [Andrew Ash] Period at end of sentence; formatting on :5050 8bf2c53 [Andrew Ash] Update site.MESOS_VERSIOn to match /pom.xml 74f2040 [Andrew Ash] SPARK-1818 Freshen Mesos documentation
* SPARK-1827. LICENSE and NOTICE files need a refresh to contain transitive ↵Sean Owen2014-05-143-6/+671
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | dependency info LICENSE and NOTICE policy is explained here: http://www.apache.org/dev/licensing-howto.html http://www.apache.org/legal/3party.html This leads to the following changes. First, this change enables two extensions to maven-shade-plugin in assembly/ that will try to include and merge all NOTICE and LICENSE files. This can't hurt. This generates a consolidated NOTICE file that I manually added to NOTICE. Next, a list of all dependencies and their licenses was generated: `mvn ... license:aggregate-add-third-party` to create: `target/generated-sources/license/THIRD-PARTY.txt` Each dependency is listed with one or more licenses. Determine the most-compatible license for each if there is more than one. For "unknown" license dependencies, I manually evaluateD their license. Many are actually Apache projects or components of projects covered already. The only non-trivial one was Colt, which has its own (compatible) license. I ignored Apache-licensed and public domain dependencies as these require no further action (beyond NOTICE above). BSD and MIT licenses (permissive Category A licenses) are evidently supposed to be mentioned in LICENSE, so I added a section without output from the THIRD-PARTY.txt file appropriately. Everything else, Category B licenses, are evidently mentioned in NOTICE (?) Same there. LICENSE contained some license statements for source code that is redistributed. I left this as I think that is the right place to put it. Author: Sean Owen <sowen@cloudera.com> Closes #770 from srowen/SPARK-1827 and squashes the following commits: a764504 [Sean Owen] Add LICENSE and NOTICE info for all transitive dependencies as of 1.0
* Fixed streaming examples docs to use run-example instead of spark-submitTathagata Das2014-05-1418-95/+130
| | | | | | | | | | | | | Pretty self-explanatory Author: Tathagata Das <tathagata.das1565@gmail.com> Closes #722 from tdas/example-fix and squashes the following commits: 7839979 [Tathagata Das] Minor changes. 0673441 [Tathagata Das] Fixed java docs of java streaming example e687123 [Tathagata Das] Fixed scala style errors. 9b8d112 [Tathagata Das] Fixed streaming examples docs to use run-example instead of spark-submit.
* [SPARK-1769] Executor loss causes NPE race conditionAndrew Or2014-05-145-26/+35
| | | | | | | | | | | | | | | | | | This PR replaces the Schedulable data structures in Pool.scala with thread-safe ones from java. Note that Scala's `with SynchronizedBuffer` trait is soon to be deprecated in 2.11 because it is ["inherently unreliable"](http://www.scala-lang.org/api/2.11.0/index.html#scala.collection.mutable.SynchronizedBuffer). We should slowly drift away from `SynchronizedBuffer` in other places too. Note that this PR introduces an API-breaking change; `sc.getAllPools` now returns an Array rather than an ArrayBuffer. This is because we want this method to return an immutable copy rather than one may potentially confuse the user if they try to modify the copy, which takes no effect on the original data structure. Author: Andrew Or <andrewor14@gmail.com> Closes #762 from andrewor14/pool-npe and squashes the following commits: 383e739 [Andrew Or] JavaConverters -> JavaConversions 3f32981 [Andrew Or] Merge branch 'master' of github.com:apache/spark into pool-npe 769be19 [Andrew Or] Assorted minor changes 2189247 [Andrew Or] Merge branch 'master' of github.com:apache/spark into pool-npe 05ad9e9 [Andrew Or] Fix test - contains is not the same as containsKey 0921ea0 [Andrew Or] var -> val 07d720c [Andrew Or] Synchronize Schedulable data structures
* Fix dep exclusion: avro-ipc, not avro, depends on netty.Marcelo Vanzin2014-05-141-6/+4
| | | | | | | | Author: Marcelo Vanzin <vanzin@cloudera.com> Closes #763 from vanzin/netty-dep-hell and squashes the following commits: dfb6ce2 [Marcelo Vanzin] Fix dep exclusion: avro-ipc, not avro, depends on netty.