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* SPARK-1255: Allow user to pass Serializer object instead of class name for ↵Reynold Xin2014-03-1618-171/+125
| | | | | | | | | | | | | | | | | | shuffle. This is more general than simply passing a string name and leaves more room for performance optimizations. Note that this is technically an API breaking change in the following two ways: 1. The shuffle serializer specification in ShuffleDependency now require an object instead of a String (of the class name), but I suspect nobody else in this world has used this API other than me in GraphX and Shark. 2. Serializer's in Spark from now on are required to be serializable. Author: Reynold Xin <rxin@apache.org> Closes #149 from rxin/serializer and squashes the following commits: 5acaccd [Reynold Xin] Properly call serializer's constructors. 2a8d75a [Reynold Xin] Added more documentation for the serializer option in ShuffleDependency. 7420185 [Reynold Xin] Allow user to pass Serializer object instead of class name for shuffle.
* SPARK-1254. Consolidate, order, and harmonize repository declarations in ↵Sean Owen2014-03-155-56/+42
| | | | | | | | | | | | | | | | | | | | Maven/SBT builds This suggestion addresses a few minor suboptimalities with how repositories are handled. 1) Use HTTPS consistently to access repos, instead of HTTP 2) Consolidate repository declarations in the parent POM file, in the case of the Maven build, so that their ordering can be controlled to put the fully optional Cloudera repo at the end, after required repos. (This was prompted by the untimely failure of the Cloudera repo this week, which made the Spark build fail. #2 would have prevented that.) 3) Update SBT build to match Maven build in this regard 4) Update SBT build to not refer to Sonatype snapshot repos. This wasn't in Maven, and a build generally would not refer to external snapshots, but I'm not 100% sure on this one. Author: Sean Owen <sowen@cloudera.com> Closes #145 from srowen/SPARK-1254 and squashes the following commits: 42f9bfc [Sean Owen] Use HTTPS for repos; consolidate repos in parent in order to put optional Cloudera repo last; harmonize SBT build repos with Maven; remove snapshot repos from SBT build which weren't in Maven
* Fix serialization of MutablePair. Also provide an interface for easy updating.Michael Armbrust2014-03-141-1/+11
| | | | | | | | | Author: Michael Armbrust <michael@databricks.com> Closes #141 from marmbrus/mutablePair and squashes the following commits: f5c4783 [Michael Armbrust] Change function name to update 8bfd973 [Michael Armbrust] Fix serialization of MutablePair. Also provide an interface for easy updating.
* [bugfix] wrong client arg, should use executor-coresTianshuo Deng2014-03-131-1/+1
| | | | | | | | | | client arg is wrong, it should be executor-cores. it causes executor fail to start when executor-cores is specified Author: Tianshuo Deng <tdeng@twitter.com> Closes #138 from tsdeng/bugfix_wrong_client_args and squashes the following commits: 304826d [Tianshuo Deng] wrong client arg, should use executor-cores
* SPARK-1236 - Upgrade Jetty to 9.1.3.v20140225.Reynold Xin2014-03-134-46/+49
| | | | | | | | | | Author: Reynold Xin <rxin@apache.org> Closes #113 from rxin/jetty9 and squashes the following commits: 867a2ce [Reynold Xin] Updated Jetty version to 9.1.3.v20140225 in Maven build file. d7c97ca [Reynold Xin] Return the correctly bound port. d14706f [Reynold Xin] Upgrade Jetty to 9.1.3.v20140225.
* SPARK-1183. Don't use "worker" to mean executorSandy Ryza2014-03-1321-294/+312
| | | | | | | | | | | | Author: Sandy Ryza <sandy@cloudera.com> Closes #120 from sryza/sandy-spark-1183 and squashes the following commits: 5066a4a [Sandy Ryza] Remove "worker" in a couple comments 0bd1e46 [Sandy Ryza] Remove --am-class from usage bfc8fe0 [Sandy Ryza] Remove am-class from doc and fix yarn-alpha 607539f [Sandy Ryza] Address review comments 74d087a [Sandy Ryza] SPARK-1183. Don't use "worker" to mean executor
* [SPARK-1237, 1238] Improve the computation of YtY for implicit ALSXiangrui Meng2014-03-132-55/+134
| | | | | | | | | | | | | | | | | | | | Computing YtY can be implemented using BLAS's DSPR operations instead of generating y_i y_i^T and then combining them. The latter generates many k-by-k matrices. On the movielens data, this change improves the performance by 10-20%. The algorithm remains the same, verified by computing RMSE on the movielens data. To compare the results, I also added an option to set a random seed in ALS. JIRA: 1. https://spark-project.atlassian.net/browse/SPARK-1237 2. https://spark-project.atlassian.net/browse/SPARK-1238 Author: Xiangrui Meng <meng@databricks.com> Closes #131 from mengxr/als and squashes the following commits: ed00432 [Xiangrui Meng] minor changes d984623 [Xiangrui Meng] minor changes 2fc1641 [Xiangrui Meng] remove commented code 4c7cde2 [Xiangrui Meng] allow specifying a random seed in ALS 200bef0 [Xiangrui Meng] optimize computeYtY and updateBlock
* SPARK-1019: pyspark RDD take() throws an NPEPatrick Wendell2014-03-122-1/+10
| | | | | | | | Author: Patrick Wendell <pwendell@gmail.com> Closes #112 from pwendell/pyspark-take and squashes the following commits: daae80e [Patrick Wendell] SPARK-1019: pyspark RDD take() throws an NPE
* hot fix for PR105 - change to Java annotationCodingCat2014-03-121-1/+2
| | | | | | | | Author: CodingCat <zhunansjtu@gmail.com> Closes #133 from CodingCat/SPARK-1160-2 and squashes the following commits: 6607155 [CodingCat] hot fix for PR105 - change to Java annotation
* Fix example bug: compile errorjianghan2014-03-123-5/+5
| | | | | | | | Author: jianghan <jianghan@xiaomi.com> Closes #132 from pooorman/master and squashes the following commits: 54afbe0 [jianghan] Fix example bug: compile error
* SPARK-1160: Deprecate toArray in RDDCodingCat2014-03-128-11/+13
| | | | | | | | | | | | | | | | https://spark-project.atlassian.net/browse/SPARK-1160 reported by @mateiz: "It's redundant with collect() and the name doesn't make sense in Java, where we return a List (we can't return an array due to the way Java generics work). It's also missing in Python." In this patch, I deprecated the method and changed the source files using it by replacing toArray with collect() directly Author: CodingCat <zhunansjtu@gmail.com> Closes #105 from CodingCat/SPARK-1060 and squashes the following commits: 286f163 [CodingCat] deprecate in JavaRDDLike ee17b4e [CodingCat] add message and since 2ff7319 [CodingCat] deprecate toArray in RDD
* SPARK-1162 Added top in python.Prashant Sharma2014-03-121-0/+25
| | | | | | | | Author: Prashant Sharma <prashant.s@imaginea.com> Closes #93 from ScrapCodes/SPARK-1162/pyspark-top-takeOrdered and squashes the following commits: ece1fa4 [Prashant Sharma] Added top in python.
* Fix #SPARK-1149 Bad partitioners can cause Spark to hangliguoqiang2014-03-122-0/+22
| | | | | | | | | | | | | | | | | | | | | | | | | Author: liguoqiang <liguoqiang@rd.tuan800.com> Closes #44 from witgo/SPARK-1149 and squashes the following commits: 3dcdcaf [liguoqiang] Merge branch 'master' into SPARK-1149 8425395 [liguoqiang] Merge remote-tracking branch 'upstream/master' into SPARK-1149 3dad595 [liguoqiang] review comment e3e56aa [liguoqiang] Merge branch 'master' into SPARK-1149 b0d5c07 [liguoqiang] review comment d0a6005 [liguoqiang] review comment 3395ee7 [liguoqiang] Merge remote-tracking branch 'upstream/master' into SPARK-1149 ac006a3 [liguoqiang] code Formatting 3feb3a8 [liguoqiang] Merge branch 'master' into SPARK-1149 adc443e [liguoqiang] partitions check bugfix 928e1e3 [liguoqiang] Added a unit test for PairRDDFunctions.lookup with bad partitioner db6ecc5 [liguoqiang] Merge branch 'master' into SPARK-1149 1e3331e [liguoqiang] Merge branch 'master' into SPARK-1149 3348619 [liguoqiang] Optimize performance for partitions check 61e5a87 [liguoqiang] Merge branch 'master' into SPARK-1149 e68210a [liguoqiang] add partition index check to submitJob 3a65903 [liguoqiang] make the code more readable 6bb725e [liguoqiang] fix #SPARK-1149 Bad partitioners can cause Spark to hang
* [SPARK-1233] Fix running hadoop 0.23 due to java.lang.NoSuchFieldException: ↵Thomas Graves2014-03-121-0/+2
| | | | | | | | | | | | DEFAULT_M... ...APREDUCE_APPLICATION_CLASSPATH Author: Thomas Graves <tgraves@apache.org> Closes #129 from tgravescs/SPARK-1233 and squashes the following commits: 85ff5a6 [Thomas Graves] Fix running hadoop 0.23 due to java.lang.NoSuchFieldException: DEFAULT_MAPREDUCE_APPLICATION_CLASSPATH
* [SPARK-1232] Fix the hadoop 0.23 yarn buildThomas Graves2014-03-121-0/+12
| | | | | | | | Author: Thomas Graves <tgraves@apache.org> Closes #127 from tgravescs/SPARK-1232 and squashes the following commits: c05cfd4 [Thomas Graves] Fix the hadoop 0.23 yarn build
* Spark-1163, Added missing Python RDD functionsprabinb2014-03-112-0/+46
| | | | | | | | Author: prabinb <prabin.banka@imaginea.com> Closes #92 from prabinb/python-api-rdd and squashes the following commits: 51129ca [prabinb] Added missing Python RDD functions Added __repr__ function to StorageLevel class. Added doctest for RDD.getStorageLevel().
* SPARK-1064Sandy Ryza2014-03-113-1/+94
| | | | | | | | | | | This reopens PR 649 from incubator-spark against the new repo Author: Sandy Ryza <sandy@cloudera.com> Closes #102 from sryza/sandy-spark-1064 and squashes the following commits: 270e490 [Sandy Ryza] Handle different application classpath variables in different versions 88b04e0 [Sandy Ryza] SPARK-1064. Make it possible to run on YARN without bundling Hadoop jars in Spark assembly
* SPARK-1167: Remove metrics-ganglia from default build due to LGPL issues...Patrick Wendell2014-03-1112-16/+190
| | | | | | | | | | | | | | | | | | | This patch removes Ganglia integration from the default build. It allows users willing to link against LGPL code to use Ganglia by adding build flags or linking against a new Spark artifact called spark-ganglia-lgpl. This brings Spark in line with the Apache policy on LGPL code enumerated here: https://www.apache.org/legal/3party.html#options-optional Author: Patrick Wendell <pwendell@gmail.com> Closes #108 from pwendell/ganglia and squashes the following commits: 326712a [Patrick Wendell] Responding to review feedback 5f28ee4 [Patrick Wendell] SPARK-1167: Remove metrics-ganglia from default build due to LGPL issues.
* SPARK-1211. In ApplicationMaster, set spark.master system property to "y...Sandy Ryza2014-03-102-0/+6
| | | | | | | | | | ...arn-cluster" Author: Sandy Ryza <sandy@cloudera.com> Closes #118 from sryza/sandy-spark-1211 and squashes the following commits: d4001c7 [Sandy Ryza] SPARK-1211. In ApplicationMaster, set spark.master system property to "yarn-cluster"
* SPARK-1205: Clean up callSite/origin/generator.Patrick Wendell2014-03-108-38/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | This patch removes the `generator` field and simplifies + documents the tracking of callsites. There are two places where we care about call sites, when a job is run and when an RDD is created. This patch retains both of those features but does a slight refactoring and renaming to make things less confusing. There was another feature of an rdd called the `generator` which was by default the user class that in which the RDD was created. This is used exclusively in the JobLogger. It been subsumed by the ability to name a job group. The job logger can later be refectored to read the job group directly (will require some work) but for now this just preserves the default logged value of the user class. I'm not sure any users ever used the ability to override this. Author: Patrick Wendell <pwendell@gmail.com> Closes #106 from pwendell/callsite and squashes the following commits: fc1d009 [Patrick Wendell] Compile fix e17fb76 [Patrick Wendell] Review feedback: callSite -> creationSite 62e77ef [Patrick Wendell] Review feedback 576e60b [Patrick Wendell] SPARK-1205: Clean up callSite/origin/generator.
* SPARK-1168, Added foldByKey to pyspark.Prashant Sharma2014-03-101-0/+14
| | | | | | | | Author: Prashant Sharma <prashant.s@imaginea.com> Closes #115 from ScrapCodes/SPARK-1168/pyspark-foldByKey and squashes the following commits: db6f67e [Prashant Sharma] SPARK-1168, Added foldByKey to pyspark.
* [SPARK-972] Added detailed callsite info for ValueError in context.py ↵jyotiska2014-03-102-8/+29
| | | | | | | | | | | (resubmitted) Author: jyotiska <jyotiska123@gmail.com> Closes #34 from jyotiska/pyspark_code and squashes the following commits: c9439be [jyotiska] replaced dict with namedtuple a6bf4cd [jyotiska] added callsite info for context.py
* SPARK-977 Added Python RDD.zip functionPrabin Banka2014-03-102-2/+47
| | | | | | | | | | was raised earlier as a part of apache/incubator-spark#486 Author: Prabin Banka <prabin.banka@imaginea.com> Closes #76 from prabinb/python-api-zip and squashes the following commits: b1a31a0 [Prabin Banka] Added Python RDD.zip function
* maintain arbitrary state data for each keyChen Chao2014-03-091-1/+1
| | | | | | | | | | RT Author: Chen Chao <crazyjvm@gmail.com> Closes #114 from CrazyJvm/patch-1 and squashes the following commits: dcb0df5 [Chen Chao] maintain arbitrary state data for each key
* SPARK-782 Clean up for ASM dependency.Patrick Wendell2014-03-096-25/+53
| | | | | | | | | | | | | | | | This makes two changes. 1) Spark uses the shaded version of asm that is (conveniently) published with Kryo. 2) Existing exclude rules around asm are updated to reflect the new groupId of `org.ow2.asm`. This made all of the old rules not work with newer Hadoop versions that pull in new asm versions. Author: Patrick Wendell <pwendell@gmail.com> Closes #100 from pwendell/asm and squashes the following commits: 9235f3f [Patrick Wendell] SPARK-782 Clean up for ASM dependency.
* Fix markup errors introduced in #33 (SPARK-1189)Patrick Wendell2014-03-091-3/+3
| | | | | | | | | | These were causing errors on the configuration page. Author: Patrick Wendell <pwendell@gmail.com> Closes #111 from pwendell/master and squashes the following commits: 8467a86 [Patrick Wendell] Fix markup errors introduced in #33 (SPARK-1189)
* Add timeout for fetch fileJiacheng Guo2014-03-092-0/+13
| | | | | | | | | | | | | | | Currently, when fetch a file, the connection's connect timeout and read timeout is based on the default jvm setting, in this change, I change it to use spark.worker.timeout. This can be usefull, when the connection status between worker is not perfect. And prevent prematurely remove task set. Author: Jiacheng Guo <guojc03@gmail.com> Closes #98 from guojc/master and squashes the following commits: abfe698 [Jiacheng Guo] add space according request 2a37c34 [Jiacheng Guo] Add timeout for fetch file Currently, when fetch a file, the connection's connect timeout and read timeout is based on the default jvm setting, in this change, I change it to use spark.worker.timeout. This can be usefull, when the connection status between worker is not perfect. And prevent prematurely remove task set.
* SPARK-929: Fully deprecate usage of SPARK_MEMAaron Davidson2014-03-097-59/+90
| | | | | | | | | | | | | | | | | | | | | | | | | (Continued from old repo, prior discussion at https://github.com/apache/incubator-spark/pull/615) This patch cements our deprecation of the SPARK_MEM environment variable by replacing it with three more specialized variables: SPARK_DAEMON_MEMORY, SPARK_EXECUTOR_MEMORY, and SPARK_DRIVER_MEMORY The creation of the latter two variables means that we can safely set driver/job memory without accidentally setting the executor memory. Neither is public. SPARK_EXECUTOR_MEMORY is only used by the Mesos scheduler (and set within SparkContext). The proper way of configuring executor memory is through the "spark.executor.memory" property. SPARK_DRIVER_MEMORY is the new way of specifying the amount of memory run by jobs launched by spark-class, without possibly affecting executor memory. Other memory considerations: - The repl's memory can be set through the "--drivermem" command-line option, which really just sets SPARK_DRIVER_MEMORY. - run-example doesn't use spark-class, so the only way to modify examples' memory is actually an unusual use of SPARK_JAVA_OPTS (which is normally overriden in all cases by spark-class). This patch also fixes a lurking bug where spark-shell misused spark-class (the first argument is supposed to be the main class name, not java options), as well as a bug in the Windows spark-class2.cmd. I have not yet tested this patch on either Windows or Mesos, however. Author: Aaron Davidson <aaron@databricks.com> Closes #99 from aarondav/sparkmem and squashes the following commits: 9df4c68 [Aaron Davidson] SPARK-929: Fully deprecate usage of SPARK_MEM
* SPARK-1190: Do not initialize log4j if slf4j log4j backend is not being usedPatrick Wendell2014-03-081-2/+5
| | | | | | | | Author: Patrick Wendell <pwendell@gmail.com> Closes #107 from pwendell/logging and squashes the following commits: be21c11 [Patrick Wendell] Logging fix
* Update junitxml plugin to the latest version to avoid recompilation in every ↵Reynold Xin2014-03-082-26/+1
| | | | | | | | | | SBT command. Author: Reynold Xin <rxin@apache.org> Closes #104 from rxin/junitxml and squashes the following commits: 67ef7bf [Reynold Xin] Update junitxml plugin to the latest version to avoid recompilation in every SBT command.
* [SPARK-1194] Fix the same-RDD rule for cache replacementCheng Lian2014-03-072-6/+19
| | | | | | | | | | | | | | | | | SPARK-1194: https://spark-project.atlassian.net/browse/SPARK-1194 In the current implementation, when selecting candidate blocks to be swapped out, once we find a block from the same RDD that the block to be stored belongs to, cache eviction fails and aborts. In this PR, we keep selecting blocks *not* from the RDD that the block to be stored belongs to until either enough free space can be ensured (cache eviction succeeds) or all such blocks are checked (cache eviction fails). Author: Cheng Lian <lian.cs.zju@gmail.com> Closes #96 from liancheng/fix-spark-1194 and squashes the following commits: 2524ab9 [Cheng Lian] Added regression test case for SPARK-1194 6e40c22 [Cheng Lian] Remove redundant comments 40cdcb2 [Cheng Lian] Bug fix, and addressed PR comments from @mridulm 62c92ac [Cheng Lian] Fixed SPARK-1194 https://spark-project.atlassian.net/browse/SPARK-1194
* Allow sbt to use more than 1G of heap.Reynold Xin2014-03-071-1/+1
| | | | | | | | | | | | There was a mistake in sbt build file ( introduced by 012bd5fbc97dc40bb61e0e2b9cc97ed0083f37f6 ) in which we set the default to 2048 and the immediately reset it to 1024. Without this, building Spark can run out of permgen space on my machine. Author: Reynold Xin <rxin@apache.org> Closes #103 from rxin/sbt and squashes the following commits: 8829c34 [Reynold Xin] Allow sbt to use more than 1G of heap.
* SPARK-1193. Fix indentation in pom.xmlsSandy Ryza2014-03-0714-319/+305
| | | | | | | | Author: Sandy Ryza <sandy@cloudera.com> Closes #91 from sryza/sandy-spark-1193 and squashes the following commits: a878124 [Sandy Ryza] SPARK-1193. Fix indentation in pom.xmls
* Spark 1165 rdd.intersection in python and javaPrashant Sharma2014-03-075-0/+75
| | | | | | | | | | | | Author: Prashant Sharma <prashant.s@imaginea.com> Author: Prashant Sharma <scrapcodes@gmail.com> Closes #80 from ScrapCodes/SPARK-1165/RDD.intersection and squashes the following commits: 9b015e9 [Prashant Sharma] Added a note, shuffle is required for intersection. 1fea813 [Prashant Sharma] correct the lines wrapping d0c71f3 [Prashant Sharma] SPARK-1165 RDD.intersection in java d6effee [Prashant Sharma] SPARK-1165 Implemented RDD.intersection in python.
* SPARK-1195: set map_input_file environment variable in PipedRDDThomas Graves2014-03-073-53/+158
| | | | | | | | | | | | | | | | Hadoop uses the config mapreduce.map.input.file to indicate the input filename to the map when the input split is of type FileSplit. Some of the hadoop input and output formats set or use this config. This config can also be used by user code. PipedRDD runs an external process and the configs aren't available to that process. Hadoop Streaming does something very similar and the way they make configs available is exporting them into the environment replacing '.' with '_'. Spark should also export this variable when launching the pipe command so the user code has access to that config. Note that the config mapreduce.map.input.file is the new one, the old one which is deprecated but not yet removed is map.input.file. So we should handle both. Perhaps it would be better to abstract this out somehow so it goes into the HadoopParition code? Author: Thomas Graves <tgraves@apache.org> Closes #94 from tgravescs/map_input_file and squashes the following commits: cc97a6a [Thomas Graves] Update test to check for existence of command, add a getPipeEnvVars function to HadoopRDD e3401dc [Thomas Graves] Merge remote-tracking branch 'upstream/master' into map_input_file 2ba805e [Thomas Graves] set map_input_file environment variable in PipedRDD
* SPARK-1136: Fix FaultToleranceTest for Docker 0.8.1Aaron Davidson2014-03-076-12/+73
| | | | | | | | | | | | | | | This patch allows the FaultToleranceTest to work in newer versions of Docker. See https://spark-project.atlassian.net/browse/SPARK-1136 for more details. Besides changing the Docker and FaultToleranceTest internals, this patch also changes the behavior of Master to accept new Workers which share an address with a Worker that we are currently trying to recover. This can only happen when the Worker itself was restarted and got the same IP address/port at the same time as a Master recovery occurs. Finally, this adds a good bit of ASCII art to the test to make failures, successes, and actions more apparent. This is very much needed. Author: Aaron Davidson <aaron@databricks.com> Closes #5 from aarondav/zookeeper and squashes the following commits: 5d7a72a [Aaron Davidson] SPARK-1136: Fix FaultToleranceTest for Docker 0.8.1
* Small clean-up to flatmap testsPatrick Wendell2014-03-061-8/+3
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* Example for cassandra CQL read/write from sparkanitatailor2014-03-061-0/+137
| | | | | | | | | | | Cassandra read/write using CqlPagingInputFormat/CqlOutputFormat Author: anitatailor <tailor.anita@gmail.com> Closes #87 from anitatailor/master and squashes the following commits: 3493f81 [anitatailor] Fixed scala style as per review 19480b7 [anitatailor] Example for cassandra CQL read/write from spark
* SPARK-1197. Change yarn-standalone to yarn-cluster and fix up running on ↵Sandy Ryza2014-03-064-34/+51
| | | | | | | | | | | | | YARN docs This patch changes "yarn-standalone" to "yarn-cluster" (but still supports the former). It also cleans up the Running on YARN docs and adds a section on how to view logs. Author: Sandy Ryza <sandy@cloudera.com> Closes #95 from sryza/sandy-spark-1197 and squashes the following commits: 563ef3a [Sandy Ryza] Review feedback 6ad06d4 [Sandy Ryza] Change yarn-standalone to yarn-cluster and fix up running on YARN docs
* SPARK-1189: Add Security to Spark - Akka, Http, ConnectionManager, UI use ↵Thomas Graves2014-03-0672-292/+2251
| | | | | | | | | | | | | | | | | | | | | | | | | | | servlets resubmit pull request. was https://github.com/apache/incubator-spark/pull/332. Author: Thomas Graves <tgraves@apache.org> Closes #33 from tgravescs/security-branch-0.9-with-client-rebase and squashes the following commits: dfe3918 [Thomas Graves] Fix merge conflict since startUserClass now using runAsUser 05eebed [Thomas Graves] Fix dependency lost in upmerge d1040ec [Thomas Graves] Fix up various imports 05ff5e0 [Thomas Graves] Fix up imports after upmerging to master ac046b3 [Thomas Graves] Merge remote-tracking branch 'upstream/master' into security-branch-0.9-with-client-rebase 13733e1 [Thomas Graves] Pass securityManager and SparkConf around where we can. Switch to use sparkConf for reading config whereever possible. Added ConnectionManagerSuite unit tests. 4a57acc [Thomas Graves] Change UI createHandler routines to createServlet since they now return servlets 2f77147 [Thomas Graves] Rework from comments 50dd9f2 [Thomas Graves] fix header in SecurityManager ecbfb65 [Thomas Graves] Fix spacing and formatting b514bec [Thomas Graves] Fix reference to config ed3d1c1 [Thomas Graves] Add security.md 6f7ddf3 [Thomas Graves] Convert SaslClient and SaslServer to scala, change spark.authenticate.ui to spark.ui.acls.enable, and fix up various other things from review comments 2d9e23e [Thomas Graves] Merge remote-tracking branch 'upstream/master' into security-branch-0.9-with-client-rebase_rework 5721c5a [Thomas Graves] update AkkaUtilsSuite test for the actorSelection changes, fix typos based on comments, and remove extra lines I missed in rebase from AkkaUtils f351763 [Thomas Graves] Add Security to Spark - Akka, Http, ConnectionManager, UI to use servlets
* SPARK-942: Do not materialize partitions when DISK_ONLY storage level is usedKyle Ellrott2014-03-068-53/+226
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a port of a pull request original targeted at incubator-spark: https://github.com/apache/incubator-spark/pull/180 Essentially if a user returns a generative iterator (from a flatMap operation), when trying to persist the data, Spark would first unroll the iterator into an ArrayBuffer, and then try to figure out if it could store the data. In cases where the user provided an iterator that generated more data then available memory, this would case a crash. With this patch, if the user requests a persist with a 'StorageLevel.DISK_ONLY', the iterator will be unrolled as it is inputed into the serializer. To do this, two changes where made: 1) The type of the 'values' argument in the putValues method of the BlockStore interface was changed from ArrayBuffer to Iterator (and all code interfacing with this method was modified to connect correctly. 2) The JavaSerializer now calls the ObjectOutputStream 'reset' method every 1000 objects. This was done because the ObjectOutputStream caches objects (thus preventing them from being GC'd) to write more compact serialization. If reset is never called, eventually the memory fills up, if it is called too often then the serialization streams become much larger because of redundant class descriptions. Author: Kyle Ellrott <kellrott@gmail.com> Closes #50 from kellrott/iterator-to-disk and squashes the following commits: 9ef7cb8 [Kyle Ellrott] Fixing formatting issues. 60e0c57 [Kyle Ellrott] Fixing issues (formatting, variable names, etc.) from review comments 8aa31cd [Kyle Ellrott] Merge ../incubator-spark into iterator-to-disk 33ac390 [Kyle Ellrott] Merge branch 'iterator-to-disk' of github.com:kellrott/incubator-spark into iterator-to-disk 2f684ea [Kyle Ellrott] Refactoring the BlockManager to replace the Either[Either[A,B]] usage. Now using trait 'Values'. Also modified BlockStore.putBytes call to return PutResult, so that it behaves like putValues. f70d069 [Kyle Ellrott] Adding docs for spark.serializer.objectStreamReset configuration 7ccc74b [Kyle Ellrott] Moving the 'LargeIteratorSuite' to simply test persistance of iterators. It doesn't try to invoke a OOM error any more 16a4cea [Kyle Ellrott] Streamlined the LargeIteratorSuite unit test. It should now run in ~25 seconds. Confirmed that it still crashes an unpatched copy of Spark. c2fb430 [Kyle Ellrott] Removing more un-needed array-buffer to iterator conversions 627a8b7 [Kyle Ellrott] Wrapping a few long lines 0f28ec7 [Kyle Ellrott] Adding second putValues to BlockStore interface that accepts an ArrayBuffer (rather then an Iterator). This will allow BlockStores to have slightly different behaviors dependent on whether they get an Iterator or ArrayBuffer. In the case of the MemoryStore, it needs to duplicate and cache an Iterator into an ArrayBuffer, but if handed a ArrayBuffer, it can skip the duplication. 656c33e [Kyle Ellrott] Fixing the JavaSerializer to read from the SparkConf rather then the System property. 8644ee8 [Kyle Ellrott] Merge branch 'master' into iterator-to-disk 00c98e0 [Kyle Ellrott] Making the Java ObjectStreamSerializer reset rate configurable by the system variable 'spark.serializer.objectStreamReset', default is not 10000. 40fe1d7 [Kyle Ellrott] Removing rouge space 31fe08e [Kyle Ellrott] Removing un-needed semi-colons 9df0276 [Kyle Ellrott] Added check to make sure that streamed-to-dist RDD actually returns good data in the LargeIteratorSuite a6424ba [Kyle Ellrott] Wrapping long line 2eeda75 [Kyle Ellrott] Fixing dumb mistake ("||" instead of "&&") 0e6f808 [Kyle Ellrott] Deleting temp output directory when done 95c7f67 [Kyle Ellrott] Simplifying StorageLevel checks 56f71cd [Kyle Ellrott] Merge branch 'master' into iterator-to-disk 44ec35a [Kyle Ellrott] Adding some comments. 5eb2b7e [Kyle Ellrott] Changing the JavaSerializer reset to occur every 1000 objects. f403826 [Kyle Ellrott] Merge branch 'master' into iterator-to-disk 81d670c [Kyle Ellrott] Adding unit test for straight to disk iterator methods. d32992f [Kyle Ellrott] Merge remote-tracking branch 'origin/master' into iterator-to-disk cac1fad [Kyle Ellrott] Fixing MemoryStore, so that it converts incoming iterators to ArrayBuffer objects. This was previously done higher up the stack. efe1102 [Kyle Ellrott] Changing CacheManager and BlockManager to pass iterators directly to the serializer when a 'DISK_ONLY' persist is called. This is in response to SPARK-942.
* SPARK-1187, Added missing Python APIsPrabin Banka2014-03-062-0/+38
| | | | | | | | | | | | | | | | | The following Python APIs are added, RDD.id() SparkContext.setJobGroup() SparkContext.setLocalProperty() SparkContext.getLocalProperty() SparkContext.sparkUser() was raised earlier as a part of apache/incubator-spark#486 Author: Prabin Banka <prabin.banka@imaginea.com> Closes #75 from prabinb/python-api-backup and squashes the following commits: cc3c6cd [Prabin Banka] Added missing Python APIs
* SPARK-1156: allow user to login into a cluster without slavesCodingCat2014-03-051-5/+6
| | | | | | | | | | | | | | Reported in https://spark-project.atlassian.net/browse/SPARK-1156 The current spark-ec2 script doesn't allow user to login to a cluster without slaves. One of the issues brought by this behaviour is that when all the worker died, the user cannot even login to the cluster for debugging, etc. Author: CodingCat <zhunansjtu@gmail.com> Closes #58 from CodingCat/SPARK-1156 and squashes the following commits: 104af07 [CodingCat] output ERROR to stderr 9a71769 [CodingCat] do not allow user to start 0-slave cluster 24a7c79 [CodingCat] allow user to login into a cluster without slaves
* SPARK-1184: Update the distribution tar.gz to include spark-assembly jarMark Grover2014-03-052-1/+15
| | | | | | | | | | See JIRA for details. Author: Mark Grover <mark@apache.org> Closes #78 from markgrover/SPARK-1184 and squashes the following commits: 12b78e6 [Mark Grover] SPARK-1184: Update the distribution tar.gz to include spark-assembly jar
* Improve building with maven docsliguoqiang2014-03-051-1/+1
| | | | | | | | | | | | | | mvn -Dhadoop.version=... -Dsuites=spark.repl.ReplSuite test to mvn -Dhadoop.version=... -Dsuites=org.apache.spark.repl.ReplSuite test Author: liguoqiang <liguoqiang@rd.tuan800.com> Closes #70 from witgo/building_with_maven and squashes the following commits: 6ec8a54 [liguoqiang] spark.repl.ReplSuite to org.apache.spark.repl.ReplSuite
* SPARK-1171: when executor is removed, we should minus totalCores instead of ↵CodingCat2014-03-052-3/+7
| | | | | | | | | | | | | | | | | | | just freeCores on that executor https://spark-project.atlassian.net/browse/SPARK-1171 When the executor is removed, the current implementation will only minus the freeCores of that executor. Actually we should minus the totalCores... Author: CodingCat <zhunansjtu@gmail.com> Author: Nan Zhu <CodingCat@users.noreply.github.com> Closes #63 from CodingCat/simplify_CoarseGrainedSchedulerBackend and squashes the following commits: f6bf93f [Nan Zhu] code clean 19c2bb4 [CodingCat] use copy idiom to reconstruct the workerOffers 43c13e9 [CodingCat] keep WorkerOffer immutable af470d3 [CodingCat] style fix 0c0e409 [CodingCat] simplify the implementation of CoarseGrainedSchedulerBackend
* SPARK-1109 wrong API docs for pyspark map functionPrashant Sharma2014-03-041-1/+1
| | | | | | | | Author: Prashant Sharma <prashant.s@imaginea.com> Closes #73 from ScrapCodes/SPARK-1109/wrong-API-docs and squashes the following commits: 1a55b58 [Prashant Sharma] SPARK-1109 wrong API docs for pyspark map function
* SPARK-1178: missing document of spark.scheduler.revive.intervalCodingCat2014-03-041-0/+7
| | | | | | | | | | | | | | https://spark-project.atlassian.net/browse/SPARK-1178 The configuration on spark.scheduler.revive.interval is undocumented but actually used https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/cluster/CoarseGrainedSchedulerBackend.scala#L64 Author: CodingCat <zhunansjtu@gmail.com> Closes #74 from CodingCat/SPARK-1178 and squashes the following commits: 783ec69 [CodingCat] missing document of spark.scheduler.revive.interval
* SPARK-1164 Deprecated reduceByKeyToDriver as it is an alias for ↵Prashant Sharma2014-03-041-0/+1
| | | | | | | | | | reduceByKeyLocally Author: Prashant Sharma <prashant.s@imaginea.com> Closes #72 from ScrapCodes/SPARK-1164/deprecate-reducebykeytodriver and squashes the following commits: ee521cd [Prashant Sharma] SPARK-1164 Deprecated reduceByKeyToDriver as it is an alias for reduceByKeyLocally
* [java8API] SPARK-964 Investigate the potential for using JDK 8 lambda ↵Prashant Sharma2014-03-0352-551/+1946
| | | | | | | | | | | | | | | | | | | expressions for the Java/Scala APIs Author: Prashant Sharma <prashant.s@imaginea.com> Author: Patrick Wendell <pwendell@gmail.com> Closes #17 from ScrapCodes/java8-lambdas and squashes the following commits: 95850e6 [Patrick Wendell] Some doc improvements and build changes to the Java 8 patch. 85a954e [Prashant Sharma] Nit. import orderings. 673f7ac [Prashant Sharma] Added support for -java-home as well 80a13e8 [Prashant Sharma] Used fake class tag syntax 26eb3f6 [Prashant Sharma] Patrick's comments on PR. 35d8d79 [Prashant Sharma] Specified java 8 building in the docs 31d4cd6 [Prashant Sharma] Maven build to support -Pjava8-tests flag. 4ab87d3 [Prashant Sharma] Review feedback on the pr c33dc2c [Prashant Sharma] SPARK-964, Java 8 API Support.
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