| Commit message (Collapse) | Author | Age | Files | Lines |
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This reverts commit 38c1fbd9694430cefd962c90bc36b0d108c6124b.
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This reverts commit d7ac6013483e83caff8ea54c228f37aeca159db8.
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In practice, only 2-4 cores should be required to transfer roughly 10 Gb/s, and each core that we use will have an initial overhead of roughly 32 MB of off-heap memory, which comes at a premium.
Thus, this value should still retain maximum throughput and reduce wasted off-heap memory allocation. It can be overridden by setting the number of serverThreads and clientThreads manually in Spark's configuration.
Author: Aaron Davidson <aaron@databricks.com>
Closes #3469 from aarondav/fewer-pools2 and squashes the following commits:
087c59f [Aaron Davidson] [SPARK-4516] Cap default number of Netty threads at 8
(cherry picked from commit f5f2d27385c243959f03a9d78a149d5f405b2f50)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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Fix [SPARK-4471](https://issues.apache.org/jira/browse/SPARK-4471): blockManagerIdFromJson function throws exception while BlockManagerId be null in MetadataFetchFailedException
Author: hushan[胡珊] <hushan@xiaomi.com>
Closes #3340 from suyanNone/fix-blockmanagerId-jnothing-2 and squashes the following commits:
159f9a3 [hushan[胡珊]] Refine test code for blockmanager is null
4380d73 [hushan[胡珊]] remove useless blank line
3ccf651 [hushan[胡珊]] Fix SPARK-4471: blockManagerIdFromJson function throws exception while metadata fetch failed
(cherry picked from commit 9bdf5da59036c0b052df756fc4a28d64677072e7)
Signed-off-by: Andrew Or <andrew@databricks.com>
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The documentation points the user to run the following
```
sbin/start-history-server.sh
```
The first thing this does is throw an exception that complains a log directory is not specified. The exception message itself does not say anything about what to set. Instead we should have a default and a landing page with a better message. The new default log directory is `file:/tmp/spark-events`.
This is what it looks like as of this PR:
![after](https://issues.apache.org/jira/secure/attachment/12682985/after.png)
Author: Andrew Or <andrew@databricks.com>
Closes #3411 from andrewor14/minor-history-improvements and squashes the following commits:
f33d6b3 [Andrew Or] Point user to set config if default log dir does not exist
fc4c17a [Andrew Or] Improve HistoryServer UX
(cherry picked from commit 9afcbe494a3535a9bf7958429b72e989972f82d9)
Signed-off-by: Andrew Or <andrew@databricks.com>
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**Summary.** On failover, the Master may receive duplicate registrations from the same worker, causing the worker to exit. This is caused by this commit https://github.com/apache/spark/commit/4afe9a4852ebeb4cc77322a14225cd3dec165f3f, which adds logic for the worker to re-register with the master in case of failures. However, the following race condition may occur:
(1) Master A fails and Worker attempts to reconnect to all masters
(2) Master B takes over and notifies Worker
(3) Worker responds by registering with Master B
(4) Meanwhile, Worker's previous reconnection attempt reaches Master B, causing the same Worker to register with Master B twice
**Fix.** Instead of attempting to register with all known masters, the worker should re-register with only the one that it has been communicating with. This is safe because the fact that a failover has occurred means the old master must have died. Then, when the worker is finally notified of a new master, it gives up on the old one in favor of the new one.
**Caveat.** Even this fix is subject to more obscure race conditions. For instance, if Master B fails and Master A recovers immediately, then Master A may still observe duplicate worker registrations. However, this and other potential race conditions summarized in [SPARK-4592](https://issues.apache.org/jira/browse/SPARK-4592), are much, much less likely than the one described above, which is deterministically reproducible.
Author: Andrew Or <andrew@databricks.com>
Closes #3447 from andrewor14/standalone-failover and squashes the following commits:
0d9716c [Andrew Or] Move re-registration logic to actor for thread-safety
79286dc [Andrew Or] Preserve old behavior for initial retries
83b321c [Andrew Or] Tweak wording
1fce6a9 [Andrew Or] Active master actor could be null in the beginning
b6f269e [Andrew Or] Avoid duplicate worker registrations
(cherry picked from commit 1b2ab1cd1b7cab9076f3c511188a610eda935701)
Signed-off-by: Andrew Or <andrew@databricks.com>
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Functionally, this is just a small change on top of #3393 (by jongyoul). The issue being addressed is discussed in the comments there. I have not yet added a test for the bug there. I will add one shortly.
I've also done some minor renaming/clean-up of variables in this class and tests.
Author: Patrick Wendell <pwendell@gmail.com>
Author: Jongyoul Lee <jongyoul@gmail.com>
Closes #3436 from pwendell/mesos-issue and squashes the following commits:
58c35b5 [Patrick Wendell] Adding unit test for this situation
c4f0697 [Patrick Wendell] Additional clean-up and fixes on top of existing fix
f20f1b3 [Jongyoul Lee] [SPARK-4525] MesosSchedulerBackend.resourceOffers cannot decline unused offers from acceptedOffers - Added code for declining unused offers among acceptedOffers - Edited testCase for checking declining unused offers
(cherry picked from commit b043c27424d05e3200e7ba99a1a65656b57fa2f0)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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This reverts commit 4b4797309457b9301710b6e98550817337005eca.
I accidentally committed this using my own authorship credential. However,
I should have given authoriship to the original author: Jongyoul Lee.
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Functionally, this is just a small change on top of #3393 (by jongyoul). The issue being addressed is discussed in the comments there. I have not yet added a test for the bug there. I will add one shortly.
I've also done some minor renaming/clean-up of variables in this class and tests.
Author: Patrick Wendell <pwendell@gmail.com>
Author: Jongyoul Lee <jongyoul@gmail.com>
Closes #3436 from pwendell/mesos-issue and squashes the following commits:
58c35b5 [Patrick Wendell] Adding unit test for this situation
c4f0697 [Patrick Wendell] Additional clean-up and fixes on top of existing fix
f20f1b3 [Jongyoul Lee] [SPARK-4525] MesosSchedulerBackend.resourceOffers cannot decline unused offers from acceptedOffers - Added code for declining unused offers among acceptedOffers - Edited testCase for checking declining unused offers
(cherry picked from commit b043c27424d05e3200e7ba99a1a65656b57fa2f0)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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The commit changes the java script used to show/hide additional
metrics in order to reduce page load time. SPARK-4016 significantly
increased page load time for the stage page when stages had a lot
(thousands or tens of thousands) of tasks, due to the additional
Javascript to hide some metrics by default and stripe the tables.
This commit reduces page load time in two ways:
(1) Now, all of the metrics that are hidden by default are
hidden by setting "display: none;" using CSS for the page,
rather than hiding them using javascript after the page loads.
Without this change, for stages with thousands of tasks, there
was a few second delay after page load, where first the additional
metrics were shown, and then after a delay were hidden once the
relevant JS finished running.
(2) CSS is used to stripe all of the tables except for the summary
table. The summary table needs javascript to do the striping because
some rows are hidden, but the javascript striping is slower, which
again resulted in a delay when it was used for the task table (where
for a few seconds after page load, all of the rows in the task table
would be white, while the browser finished running the JS to stripe
the table).
cc pwendell
This change is intended to be backported to 1.2 to avoid a regression in
UI performance when users run large jobs.
Author: Kay Ousterhout <kayousterhout@gmail.com>
Closes #3328 from kayousterhout/SPARK-4266 and squashes the following commits:
f964091 [Kay Ousterhout] [SPARK-4266] [Web-UI] Reduce stage page load time.
(cherry picked from commit d24d5bf064572a2319627736b1fbf112b4a78edf)
Signed-off-by: Kay Ousterhout <kayousterhout@gmail.com>
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Re-implement the Python broadcast using file:
1) serialize the python object using cPickle, write into disks.
2) Create a wrapper in JVM (for the dumped file), it read data from during serialization
3) Using TorrentBroadcast or HttpBroadcast to transfer the data (compressed) into executors
4) During deserialization, writing the data into disk.
5) Passing the path into Python worker, read data from disk and unpickle it into python object, until the first access.
It fixes the performance regression introduced in #2659, has similar performance as 1.1, but support object larger than 2G, also improve the memory efficiency (only one compressed copy in driver and executor).
Testing with a 500M broadcast and 4 tasks (excluding the benefit from reused worker in 1.2):
name | 1.1 | 1.2 with this patch | improvement
---------|--------|---------|--------
python-broadcast-w-bytes | 25.20 | 9.33 | 170.13% |
python-broadcast-w-set | 4.13 | 4.50 | -8.35% |
Testing with 100 tasks (16 CPUs):
name | 1.1 | 1.2 with this patch | improvement
---------|--------|---------|--------
python-broadcast-w-bytes | 38.16 | 8.40 | 353.98%
python-broadcast-w-set | 23.29 | 9.59 | 142.80%
Author: Davies Liu <davies@databricks.com>
Closes #3417 from davies/pybroadcast and squashes the following commits:
50a58e0 [Davies Liu] address comments
b98de1d [Davies Liu] disable gc while unpickle
e5ee6b9 [Davies Liu] support large string
09303b8 [Davies Liu] read all data into memory
dde02dd [Davies Liu] improve performance of python broadcast
(cherry picked from commit 6cf507685efd01df77d663145ae08e48c7f92948)
Signed-off-by: Josh Rosen <joshrosen@databricks.com>
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This PR adds two new pages to the Spark Web UI:
- A jobs overview page, which shows details on running / completed / failed jobs.
- A job details page, which displays information on an individual job's stages.
The jobs overview page is now the default UI homepage; the old homepage is still accessible at `/stages`.
### Screenshots
#### New UI homepage
![image](https://cloud.githubusercontent.com/assets/50748/5119035/fd0a69e6-701f-11e4-89cb-db7e9705714f.png)
#### Job details page
(This is effectively a per-job version of the stages page that can be extended later with other things, such as DAG visualizations)
![image](https://cloud.githubusercontent.com/assets/50748/5134910/50b340d4-70c7-11e4-88e1-6b73237ea7c8.png)
### Key changes in this PR
- Rename `JobProgressPage` to `AllStagesPage`
- Expose `StageInfo` objects in the ``SparkListenerJobStart` event; add backwards-compatibility tests to JsonProtocol.
- Add additional data structures to `JobProgressListener` to map from stages to jobs.
- Add several fields to `JobUIData`.
I also added ~150 lines of Selenium tests as I uncovered UI issues while developing this patch.
### Limitations
If a job contains stages that aren't run, then its overall job progress bar may be an underestimate of the total job progress; in other words, a completed job may appear to have a progress bar that's not at 100%.
If stages or tasks fail, then the progress bar will not go backwards to reflect the true amount of remaining work.
Author: Josh Rosen <joshrosen@databricks.com>
Closes #3009 from JoshRosen/job-page and squashes the following commits:
eb05e90 [Josh Rosen] Disable kill button in completed stages tables.
f00c851 [Josh Rosen] Fix JsonProtocol compatibility
b89c258 [Josh Rosen] More JSON protocol backwards-compatibility fixes.
ff804cd [Josh Rosen] Don't write "Stage Ids" field in JobStartEvent JSON.
6f17f3f [Josh Rosen] Only store StageInfos in SparkListenerJobStart event.
2bbf41a [Josh Rosen] Update job progress bar to reflect skipped tasks/stages.
61c265a [Josh Rosen] Add “skipped stages” table; only display non-empty tables.
1f45d44 [Josh Rosen] Incorporate a bunch of minor review feedback.
0b77e3e [Josh Rosen] More bug fixes for phantom stages.
034aa8d [Josh Rosen] Use `.max()` to find result stage for job.
eebdc2c [Josh Rosen] Don’t display pending stages for completed jobs.
67080ba [Josh Rosen] Ensure that "phantom stages" don't cause memory leaks.
7d10b97 [Josh Rosen] Merge remote-tracking branch 'apache/master' into job-page
d69c775 [Josh Rosen] Fix table sorting on all jobs page.
5eb39dc [Josh Rosen] Add pending stages table to job page.
f2a15da [Josh Rosen] Add status field to job details page.
171b53c [Josh Rosen] Move `startTime` to the start of SparkContext.
e2f2c43 [Josh Rosen] Fix sorting of stages in job details page.
8955f4c [Josh Rosen] Display information for pending stages on jobs page.
8ab6c28 [Josh Rosen] Compute numTasks from job start stage infos.
5884f91 [Josh Rosen] Add StageInfos to SparkListenerJobStart event.
79793cd [Josh Rosen] Track indices of completed stage to avoid overcounting when failures occur.
d62ea7b [Josh Rosen] Add failing Selenium test for stage overcounting issue.
1145c60 [Josh Rosen] Display text instead of progress bar for stages.
3d0a007 [Josh Rosen] Merge remote-tracking branch 'origin/master' into job-page
8a2351b [Josh Rosen] Add help tooltip to Spark Jobs page.
b7bf30e [Josh Rosen] Add stages progress bar; fix bug where active stages show as completed.
4846ce4 [Josh Rosen] Hide "(Job Group") if no jobs were submitted in job groups.
4d58e55 [Josh Rosen] Change label to "Tasks (for all stages)"
85e9c85 [Josh Rosen] Extract startTime into separate variable.
1cf4987 [Josh Rosen] Fix broken kill links; add Selenium test to avoid future regressions.
56701fa [Josh Rosen] Move last stage name / description logic out of markup.
a475ea1 [Josh Rosen] Add progress bars to jobs page.
45343b8 [Josh Rosen] More comments
4b206fb [Josh Rosen] Merge remote-tracking branch 'origin/master' into job-page
bfce2b9 [Josh Rosen] Address review comments, except for progress bar.
4487dcb [Josh Rosen] [SPARK-4145] Web UI job pages
2568a6c [Josh Rosen] Rename JobProgressPage to AllStagesPage:
(cherry picked from commit 4a90276ab22d6989dffb2ee2d8118d9253365646)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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shuffle is on
This PR is a workaround for SPARK-4479. Two changes are introduced: when merge sort is bypassed in `ExternalSorter`,
1. also bypass RDD elements buffering as buffering is the reason that `MutableRow` backed row objects must be copied, and
2. avoids defensive copies in `Exchange` operator
<!-- Reviewable:start -->
[<img src="https://reviewable.io/review_button.png" height=40 alt="Review on Reviewable"/>](https://reviewable.io/reviews/apache/spark/3422)
<!-- Reviewable:end -->
Author: Cheng Lian <lian@databricks.com>
Closes #3422 from liancheng/avoids-defensive-copies and squashes the following commits:
591f2e9 [Cheng Lian] Passes all shuffle suites
0c3c91e [Cheng Lian] Fixes shuffle write metrics when merge sort is bypassed
ed5df3c [Cheng Lian] Fixes styling changes
f75089b [Cheng Lian] Avoids unnecessary defensive copies when sort based shuffle is on
(cherry picked from commit a6d7b61f92dc7c1f9632cecb232afa8040ab2b4d)
Signed-off-by: Michael Armbrust <michael@databricks.com>
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MetadataCleaner schedule task with a wrong param for delay time .
Author: Leolh <leosandylh@gmail.com>
Closes #3306 from Leolh/master and squashes the following commits:
4a21f4e [Leolh] Update MetadataCleaner.scala
(cherry picked from commit e216ffaead983274428052caa992b20760b2c5e0)
Signed-off-by: Andrew Or <andrew@databricks.com>
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**Summary.** Currently, we may spill many small files in `ExternalAppendOnlyMap` and `ExternalSorter`. The underlying root cause of this is summarized in [SPARK-4452](https://issues.apache.org/jira/browse/SPARK-4452). This PR does not address this root cause, but simply provides the guarantee that we never spill the in-memory data structure if its size is less than a configurable threshold of 5MB. This config is not documented because we don't want users to set it themselves, and it is not hard-coded because we need to change it in tests.
**Symptom.** Each spill is orders of magnitude smaller than 1MB, and there are many spills. In environments where the ulimit is set, this frequently causes "too many open file" exceptions observed in [SPARK-3633](https://issues.apache.org/jira/browse/SPARK-3633).
```
14/11/13 19:20:43 INFO collection.ExternalSorter: Thread 60 spilling in-memory batch of 4792 B to disk (292769 spills so far)
14/11/13 19:20:43 INFO collection.ExternalSorter: Thread 60 spilling in-memory batch of 4760 B to disk (292770 spills so far)
14/11/13 19:20:43 INFO collection.ExternalSorter: Thread 60 spilling in-memory batch of 4520 B to disk (292771 spills so far)
14/11/13 19:20:43 INFO collection.ExternalSorter: Thread 60 spilling in-memory batch of 4560 B to disk (292772 spills so far)
14/11/13 19:20:43 INFO collection.ExternalSorter: Thread 60 spilling in-memory batch of 4792 B to disk (292773 spills so far)
14/11/13 19:20:43 INFO collection.ExternalSorter: Thread 60 spilling in-memory batch of 4784 B to disk (292774 spills so far)
```
**Reproduction.** I ran the following on a small 4-node cluster with 512MB executors. Note that the back-to-back shuffle here is necessary for reasons described in [SPARK-4522](https://issues.apache.org/jira/browse/SPARK-4452). The second shuffle is a `reduceByKey` because it performs a map-side combine.
```
sc.parallelize(1 to 100000000, 100)
.map { i => (i, i) }
.groupByKey()
.reduceByKey(_ ++ _)
.count()
```
Before the change, I notice that each thread may spill up to 1000 times, and the size of each spill is on the order of 10KB. After the change, each thread spills only up to 20 times in the worst case, and the size of each spill is on the order of 1MB.
Author: Andrew Or <andrew@databricks.com>
Closes #3353 from andrewor14/avoid-small-spills and squashes the following commits:
49f380f [Andrew Or] Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/spark into avoid-small-spills
27d6966 [Andrew Or] Merge branch 'master' of github.com:apache/spark into avoid-small-spills
f4736e3 [Andrew Or] Fix tests
a919776 [Andrew Or] Avoid many small spills
(cherry picked from commit 0eb4a7fb0fa1fa56677488cbd74eb39e65317621)
Signed-off-by: Andrew Or <andrew@databricks.com>
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message
The check for maxResultSize > 0 is missing, results in failures. Also, error message needs to be improved so the developers know that there is a new parameter to be configured
Author: Nishkam Ravi <nravi@cloudera.com>
Author: nravi <nravi@c1704.halxg.cloudera.com>
Author: nishkamravi2 <nishkamravi@gmail.com>
Closes #3360 from nishkamravi2/master_nravi and squashes the following commits:
5c9a4cb [nishkamravi2] Update TaskSetManagerSuite.scala
535295a [nishkamravi2] Update TaskSetManager.scala
3e1b616 [Nishkam Ravi] Modify test for maxResultSize
9f6583e [Nishkam Ravi] Changes to maxResultSize code (improve error message and add condition to check if maxResultSize > 0)
5f8f9ed [Nishkam Ravi] Merge branch 'master' of https://github.com/apache/spark into master_nravi
636a9ff [nishkamravi2] Update YarnAllocator.scala
8f76c8b [Nishkam Ravi] Doc change for yarn memory overhead
35daa64 [Nishkam Ravi] Slight change in the doc for yarn memory overhead
5ac2ec1 [Nishkam Ravi] Remove out
dac1047 [Nishkam Ravi] Additional documentation for yarn memory overhead issue
42c2c3d [Nishkam Ravi] Additional changes for yarn memory overhead issue
362da5e [Nishkam Ravi] Additional changes for yarn memory overhead
c726bd9 [Nishkam Ravi] Merge branch 'master' of https://github.com/apache/spark into master_nravi
f00fa31 [Nishkam Ravi] Improving logging for AM memoryOverhead
1cf2d1e [nishkamravi2] Update YarnAllocator.scala
ebcde10 [Nishkam Ravi] Modify default YARN memory_overhead-- from an additive constant to a multiplier (redone to resolve merge conflicts)
2e69f11 [Nishkam Ravi] Merge branch 'master' of https://github.com/apache/spark into master_nravi
efd688a [Nishkam Ravi] Merge branch 'master' of https://github.com/apache/spark
2b630f9 [nravi] Accept memory input as "30g", "512M" instead of an int value, to be consistent with rest of Spark
3bf8fad [nravi] Merge branch 'master' of https://github.com/apache/spark
5423a03 [nravi] Merge branch 'master' of https://github.com/apache/spark
eb663ca [nravi] Merge branch 'master' of https://github.com/apache/spark
df2aeb1 [nravi] Improved fix for ConcurrentModificationIssue (Spark-1097, Hadoop-10456)
6b840f0 [nravi] Undo the fix for SPARK-1758 (the problem is fixed)
5108700 [nravi] Fix in Spark for the Concurrent thread modification issue (SPARK-1097, HADOOP-10456)
681b36f [nravi] Fix for SPARK-1758: failing test org.apache.spark.JavaAPISuite.wholeTextFiles
(cherry picked from commit 73fedf5a6e662b640dfe29936753721988bff6ea)
Signed-off-by: Andrew Or <andrew@databricks.com>
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This rebases PR 3368.
This commit fixes totalRegisteredExecutors update [SPARK-4478], so that we can correctly keep track of number of registered executors.
Author: Akshat Aranya <aaranya@quantcast.com>
Closes #3373 from coolfrood/topic/SPARK-4478 and squashes the following commits:
8a4d1e4 [Akshat Aranya] Added comment
150ae93 [Akshat Aranya] [SPARK-4478] Keep totalRegisteredExecutors up-to-date
(cherry picked from commit 9ccc53c72c5bcffcc121291710754e1e2d659341)
Signed-off-by: Andrew Or <andrew@databricks.com>
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This commit fixes a memory leak in JobProgressListener that I introduced in SPARK-2321 and adds a testing framework to ensure that it’s very difficult to inadvertently introduce new memory leaks.
This solution might be overkill, but the main idea is to partition JobProgressListener's state into three buckets: collections that should be empty once Spark is idle, collections that must obey some hard size limit, and collections that have a soft size limit (they can grow arbitrarily large when Spark is active but must shrink to fit within some bound after Spark becomes idle).
Based on this, we can write fairly generic tests that run workloads that submit more than `spark.ui.retainedStages` stages and `spark.ui.retainedJobs` jobs then check that these various collections' sizes obey their contracts.
Author: Josh Rosen <joshrosen@databricks.com>
Closes #3372 from JoshRosen/SPARK-4495 and squashes the following commits:
c73fab5 [Josh Rosen] "data structures" -> collections
be72e81 [Josh Rosen] [SPARK-4495] Fix memory leaks in JobProgressListener
(cherry picked from commit 04d462f648aba7b18fc293b7189b86af70e421bc)
Signed-off-by: Josh Rosen <joshrosen@databricks.com>
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When running Spark locally, if number of threads is specified as 0 (e.g., `spark-submit --master local[0] ...`), the job got stuck and does not run at all.
I think it's better to validate the parameter.
Fix for [SPARK-4470](https://issues.apache.org/jira/browse/SPARK-4470).
Author: Kenichi Maehashi <webmaster@kenichimaehashi.com>
Closes #3337 from kmaehashi/spark-4470 and squashes the following commits:
3ad76f3 [Kenichi Maehashi] fix code style
7716734 [Kenichi Maehashi] SPARK-4470: Validate number of threads in local mode
(cherry picked from commit eacc788346ccae232bd530dd880f801475a49734)
Signed-off-by: Andrew Or <andrew@databricks.com>
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the elementsRead variable should be reset to 0 after each spilling
Author: Tianshuo Deng <tdeng@twitter.com>
Closes #3302 from tsdeng/fix_external_sorter_record_count and squashes the following commits:
7b56ca0 [Tianshuo Deng] fix method signature
782c7de [Tianshuo Deng] make elementsRead private, fix comment
bb7ff28 [Tianshuo Deng] update elemetsRead through addElementsRead method
74ca246 [Tianshuo Deng] fix elements read count
(cherry picked from commit d75579d09912cfb1eeac0589d625ea0452701fa0)
Signed-off-by: Andrew Or <andrew@databricks.com>
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InStream is not closed after data is read from Tachyon. which makes the blocks in Tachyon locked after accessed.
Author: Mingfei <mingfei.shi@intel.com>
Closes #3290 from shimingfei/lockFix and squashes the following commits:
fffe345 [Mingfei] close InStream after the block is accessed
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Currently Tachyon client is not closed when TachyonBlockManager is shut down. which causes some resources in Tachyon not reclaimed
Author: Mingfei <mingfei.shi@intel.com>
Closes #3299 from shimingfei/closeClient and squashes the following commits:
0913fbd [Mingfei] close Tachyon client when TachyonBlockManager is shutdown
(cherry picked from commit 67e9876b3e457b151c123fdb5ac2d8e8371e6acf)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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Spark hangs with the following code:
~~~
sc.parallelize(1 to 10).zipWithIndex.repartition(10).count()
~~~
This is because ZippedWithIndexRDD triggers a job in getPartitions and it causes a deadlock in DAGScheduler.getPreferredLocs (synced). The fix is to compute `startIndices` during construction.
This should be applied to branch-1.0, branch-1.1, and branch-1.2.
pwendell
Author: Xiangrui Meng <meng@databricks.com>
Closes #3291 from mengxr/SPARK-4433 and squashes the following commits:
c284d9f [Xiangrui Meng] fix a racing condition in zipWithIndex
(cherry picked from commit bb46046154a438df4db30a0e1fd557bd3399ee7b)
Signed-off-by: Xiangrui Meng <meng@databricks.com>
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This patch will bring support for broadcasting objects larger than 2G.
pickle, zlib, FrameSerializer and Array[Byte] all can not support objects larger than 2G, so this patch introduce LargeObjectSerializer to serialize broadcast objects, the object will be serialized and compressed into small chunks, it also change the type of Broadcast[Array[Byte]]] into Broadcast[Array[Array[Byte]]]].
Testing for support broadcast objects larger than 2G is slow and memory hungry, so this is tested manually, could be added into SparkPerf.
Author: Davies Liu <davies@databricks.com>
Author: Davies Liu <davies.liu@gmail.com>
Closes #2659 from davies/huge and squashes the following commits:
7b57a14 [Davies Liu] add more tests for broadcast
28acff9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into huge
a2f6a02 [Davies Liu] bug fix
4820613 [Davies Liu] Merge branch 'master' of github.com:apache/spark into huge
5875c73 [Davies Liu] address comments
10a349b [Davies Liu] address comments
0c33016 [Davies Liu] Merge branch 'master' of github.com:apache/spark into huge
6182c8f [Davies Liu] Merge branch 'master' into huge
d94b68f [Davies Liu] Merge branch 'master' of github.com:apache/spark into huge
2514848 [Davies Liu] address comments
fda395b [Davies Liu] Merge branch 'master' of github.com:apache/spark into huge
1c2d928 [Davies Liu] fix scala style
091b107 [Davies Liu] broadcast objects larger than 2G
(cherry picked from commit 4a377aff2d36b64a65b54192a987aba44b8f78e0)
Signed-off-by: Josh Rosen <joshrosen@databricks.com>
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This commit removes the behavior where when a user clicks
"Show additional metrics" on the stage page, all of the additional
metrics are automatically selected; now, collapsing and expanding
the additional metrics has no effect on which options are selected.
Instead, there's a "(De)select All" box at the top; checking this box
checks all additional metrics (and similarly, unchecking it unchecks
all additional metrics).
This commit is intended to be backported to 1.2, so that the additional
metrics behavior is not confusing to users.
Now when a user clicks the "Show additional metrics" menu, this is what
it looks like:
![image](https://cloud.githubusercontent.com/assets/1108612/5094347/1541ead6-6f15-11e4-8e8c-25a65ddbdfb2.png)
Author: Kay Ousterhout <kayousterhout@gmail.com>
Closes #3331 from kayousterhout/SPARK-4463 and squashes the following commits:
9e17cea [Kay Ousterhout] Added italics
b731230 [Kay Ousterhout] [SPARK-4463] Add (de)select all button for add'l metrics.
(cherry picked from commit 010bc86e40a0e54b6850b75abd6105e70eb1af10)
Signed-off-by: Andrew Or <andrew@databricks.com>
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The progress bar will look like this:
![1___spark_job__85_250_finished__4_are_running___java_](https://cloud.githubusercontent.com/assets/40902/4854813/a02f44ac-6099-11e4-9060-7c73a73151d6.png)
In the right corner, the numbers are: finished tasks, running tasks, total tasks.
After the stage has finished, it will disappear.
The progress bar is only showed if logging level is WARN or higher (but progress in title is still showed), it can be turned off by spark.driver.showConsoleProgress.
Author: Davies Liu <davies@databricks.com>
Closes #3029 from davies/progress and squashes the following commits:
95336d5 [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress
fc49ac8 [Davies Liu] address commentse
2e90f75 [Davies Liu] show multiple stages in same time
0081bcc [Davies Liu] address comments
38c42f1 [Davies Liu] fix tests
ab87958 [Davies Liu] disable progress bar during tests
30ac852 [Davies Liu] re-implement progress bar
b3f34e5 [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress
6fd30ff [Davies Liu] show progress bar if no task finished in 500ms
e4e7344 [Davies Liu] refactor
e1f524d [Davies Liu] revert unnecessary change
a60477c [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress
5cae3f2 [Davies Liu] fix style
ea49fe0 [Davies Liu] address comments
bc53d99 [Davies Liu] refactor
e6bb189 [Davies Liu] fix logging in sparkshell
7e7d4e7 [Davies Liu] address commments
5df26bb [Davies Liu] fix style
9e42208 [Davies Liu] show progress bar in console and title
(cherry picked from commit e34f38ff1a0dfbb0ffa4bd11071e03b1a58de998)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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If SparkSubmit die first, then bootstrapper will be blocked by shutdown hook. sys.exit() in a shutdown hook will cause some kind of dead lock.
cc andrewor14
Author: Davies Liu <davies@databricks.com>
Closes #3289 from davies/fix_bootstraper and squashes the following commits:
ea5cdd1 [Davies Liu] Merge branch 'master' of github.com:apache/spark into fix_bootstraper
e04b690 [Davies Liu] remove sys.exit in hook
4d11366 [Davies Liu] remove shutdown hook if subprocess die fist
(cherry picked from commit 80f31778820586a93d73fa15279a204611cc3c60)
Signed-off-by: Andrew Or <andrew@databricks.com>
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This PR adds a regression test for SPARK-4434.
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes #3326 from sarutak/add-triple-slash-testcase and squashes the following commits:
82bc9cc [Kousuke Saruta] Fixed wrong grammar in comment
9149027 [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into add-triple-slash-testcase
c1c80ca [Kousuke Saruta] Fixed style
4f30210 [Kousuke Saruta] Modified comments
9e09da2 [Kousuke Saruta] Fixed URI validation for jar file
d4b99ef [Kousuke Saruta] [SPARK-4075] [Deploy] Jar url validation is not enough for Jar file
ac79906 [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into add-triple-slash-testcase
6d4f47e [Kousuke Saruta] Added a test case as a regression check for SPARK-4434
(cherry picked from commit bfebfd8b28eeb7e75292333f7885aa0830fcb5fe)
Signed-off-by: Andrew Or <andrew@databricks.com>
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The maven release plug-in does not have support for publishing two separate sets of artifacts for a single release. Because of the way that Scala 2.11 support in Spark works, we have to write some customized code to do this. The good news is that the Maven release API is just a thin wrapper on doing git commits and pushing artifacts to the HTTP API of Apache's Sonatype server and this might overall make our deployment easier to understand.
This was already used for the 1.2 snapshot, so I think it is working well. One other nice thing is this could be pretty easily extended to publish nightly snapshots.
Author: Patrick Wendell <pwendell@gmail.com>
Closes #3332 from pwendell/releases and squashes the following commits:
2fedaed [Patrick Wendell] Automate the opening and closing of Sonatype repos
e2a24bb [Patrick Wendell] Fixing issue where we overrode non-spark version numbers
9df3a50 [Patrick Wendell] Adding TODO
1cc1749 [Patrick Wendell] Don't build the thriftserver for 2.11
933201a [Patrick Wendell] Make tagging of release commit eager
d0388a6 [Patrick Wendell] Support Scala 2.11 build
4f4dc62 [Patrick Wendell] Change to 2.11 should not be included when committing new patch
bf742e1 [Patrick Wendell] Minor fixes
ffa1df2 [Patrick Wendell] Adding a Scala 2.11 package to test it
9ac4381 [Patrick Wendell] Addressing TODO
b3105ff [Patrick Wendell] Removing commented out code
d906803 [Patrick Wendell] Small fix
3f4d985 [Patrick Wendell] More work
fcd54c2 [Patrick Wendell] Consolidating use of keys
df2af30 [Patrick Wendell] Changes to release stuff
(cherry picked from commit c6e0c2ab1c29c184a9302d23ad75e4ccd8060242)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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This patch adds error-detection logic to throw an exception when attempting to create multiple active SparkContexts in the same JVM, since this is currently unsupported and has been known to cause confusing behavior (see SPARK-2243 for more details).
**The solution implemented here is only a partial fix.** A complete fix would have the following properties:
1. Only one SparkContext may ever be under construction at any given time.
2. Once a SparkContext has been successfully constructed, any subsequent construction attempts should fail until the active SparkContext is stopped.
3. If the SparkContext constructor throws an exception, then all resources created in the constructor should be cleaned up (SPARK-4194).
4. If a user attempts to create a SparkContext but the creation fails, then the user should be able to create new SparkContexts.
This PR only provides 2) and 4); we should be able to provide all of these properties, but the correct fix will involve larger changes to SparkContext's construction / initialization, so we'll target it for a different Spark release.
### The correct solution:
I think that the correct way to do this would be to move the construction of SparkContext's dependencies into a static method in the SparkContext companion object. Specifically, we could make the default SparkContext constructor `private` and change it to accept a `SparkContextDependencies` object that contains all of SparkContext's dependencies (e.g. DAGScheduler, ContextCleaner, etc.). Secondary constructors could call a method on the SparkContext companion object to create the `SparkContextDependencies` and pass the result to the primary SparkContext constructor. For example:
```scala
class SparkContext private (deps: SparkContextDependencies) {
def this(conf: SparkConf) {
this(SparkContext.getDeps(conf))
}
}
object SparkContext(
private[spark] def getDeps(conf: SparkConf): SparkContextDependencies = synchronized {
if (anotherSparkContextIsActive) { throw Exception(...) }
var dagScheduler: DAGScheduler = null
try {
dagScheduler = new DAGScheduler(...)
[...]
} catch {
case e: Exception =>
Option(dagScheduler).foreach(_.stop())
[...]
}
SparkContextDependencies(dagScheduler, ....)
}
}
```
This gives us mutual exclusion and ensures that any resources created during the failed SparkContext initialization are properly cleaned up.
This indirection is necessary to maintain binary compatibility. In retrospect, it would have been nice if SparkContext had no private constructors and could only be created through builder / factory methods on its companion object, since this buys us lots of flexibility and makes dependency injection easier.
### Alternative solutions:
As an alternative solution, we could refactor SparkContext's primary constructor to perform all object creation in a giant `try-finally` block. Unfortunately, this will require us to turn a bunch of `vals` into `vars` so that they can be assigned from the `try` block. If we still want `vals`, we could wrap each `val` in its own `try` block (since the try block can return a value), but this will lead to extremely messy code and won't guard against the introduction of future code which doesn't properly handle failures.
The more complex approach outlined above gives us some nice dependency injection benefits, so I think that might be preferable to a `var`-ification.
### This PR's solution:
- At the start of the constructor, check whether some other SparkContext is active; if so, throw an exception.
- If another SparkContext might be under construction (or has thrown an exception during construction), allow the new SparkContext to begin construction but log a warning (since resources might have been leaked from a failed creation attempt).
- At the end of the SparkContext constructor, check whether some other SparkContext constructor has raced and successfully created an active context. If so, throw an exception.
This guarantees that no two SparkContexts will ever be active and exposed to users (since we check at the very end of the constructor). If two threads race to construct SparkContexts, then one of them will win and another will throw an exception.
This exception can be turned into a warning by setting `spark.driver.allowMultipleContexts = true`. The exception is disabled in unit tests, since there are some suites (such as Hive) that may require more significant refactoring to clean up their SparkContexts. I've made a few changes to other suites' test fixtures to properly clean up SparkContexts so that the unit test logs contain fewer warnings.
Author: Josh Rosen <joshrosen@databricks.com>
Closes #3121 from JoshRosen/SPARK-4180 and squashes the following commits:
23c7123 [Josh Rosen] Merge remote-tracking branch 'origin/master' into SPARK-4180
d38251b [Josh Rosen] Address latest round of feedback.
c0987d3 [Josh Rosen] Accept boolean instead of SparkConf in methods.
85a424a [Josh Rosen] Incorporate more review feedback.
372d0d3 [Josh Rosen] Merge remote-tracking branch 'origin/master' into SPARK-4180
f5bb78c [Josh Rosen] Update mvn build, too.
d809cb4 [Josh Rosen] Improve handling of failed SparkContext creation attempts.
79a7e6f [Josh Rosen] Fix commented out test
a1cba65 [Josh Rosen] Merge remote-tracking branch 'origin/master' into SPARK-4180
7ba6db8 [Josh Rosen] Add utility to set system properties in tests.
4629d5c [Josh Rosen] Set spark.driver.allowMultipleContexts=true in tests.
ed17e14 [Josh Rosen] Address review feedback; expose hack workaround for existing unit tests.
1c66070 [Josh Rosen] Merge remote-tracking branch 'origin/master' into SPARK-4180
06c5c54 [Josh Rosen] Add / improve SparkContext cleanup in streaming BasicOperationsSuite
d0437eb [Josh Rosen] StreamingContext.stop() should stop SparkContext even if StreamingContext has not been started yet.
c4d35a2 [Josh Rosen] Log long form of creation site to aid debugging.
918e878 [Josh Rosen] Document "one SparkContext per JVM" limitation.
afaa7e3 [Josh Rosen] [SPARK-4180] Prevent creations of multiple active SparkContexts.
(cherry picked from commit 0f3ceb56c78e7260725a09fba0e10aa193cbda4b)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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This reverts commit 098f83c7ccd7dad9f9228596da69fe5f55711a52.
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persisted.
Author: Prashant Sharma <prashant.s@imaginea.com>
Closes #3310 from ScrapCodes/SPARK-4445/rddDebugStringFix and squashes the following commits:
4e57c52 [Prashant Sharma] SPARK-4445, Don't display storage level in toDebugString unless RDD is persisted
(cherry picked from commit 5c92d47ad2e3414f2ae089cb47f3c6daccba8d90)
Signed-off-by: Patrick Wendell <pwendell@gmail.com>
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This reverts commit bc09875799aa373f4320d38b02618173ffa4c96f.
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This reverts commit 6c6fd218c83a049c874b8a0ea737333c1899c94a.
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use HashedWheelTimer
This patch is intended to fix a subtle memory leak in ConnectionManager's ACK timeout TimerTasks: in the old code, each TimerTask held a reference to the message being sent and a cancelled TimerTask won't necessarily be garbage-collected until it's scheduled to run, so this caused huge buildups of messages that weren't garbage collected until their timeouts expired, leading to OOMs.
This patch addresses this problem by capturing only the message ID in the TimerTask instead of the whole message, and by keeping a WeakReference to the promise in the TimerTask. I've also modified this code to use Netty's HashedWheelTimer, whose performance characteristics should be better for this use-case.
Thanks to cristianopris for narrowing down this issue!
Author: Josh Rosen <joshrosen@databricks.com>
Closes #3259 from JoshRosen/connection-manager-timeout-bugfix and squashes the following commits:
afcc8d6 [Josh Rosen] Address rxin's review feedback.
2a2e92d [Josh Rosen] Keep only WeakReference to promise in TimerTask;
0f0913b [Josh Rosen] Spelling fix: timout => timeout
3200c33 [Josh Rosen] Use Netty HashedWheelTimer
f847dd4 [Josh Rosen] Don't capture entire message in ACK timeout task.
(cherry picked from commit 7850e0c707affd5eafd570fb43716753396cf479)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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This PR refactors / extends the status API introduced in #2696.
- Change StatusAPI from a mixin trait to a class. Before, the new status API methods were directly accessible through SparkContext, whereas now they're accessed through a `sc.statusAPI` field. As long as we were going to add these methods directly to SparkContext, the mixin trait seemed like a good idea, but this might be simpler to reason about and may avoid pitfalls that I've run into while attempting to refactor other parts of SparkContext to use mixins (see #3071, for example).
- Change the name from SparkStatusAPI to SparkStatusTracker.
- Make `getJobIdsForGroup(null)` return ids for jobs that aren't associated with any job group.
- Add `getActiveStageIds()` and `getActiveJobIds()` methods that return the ids of whatever's currently active in this SparkContext. This should simplify davies's progress bar code.
Author: Josh Rosen <joshrosen@databricks.com>
Closes #3197 from JoshRosen/progress-api-improvements and squashes the following commits:
30b0afa [Josh Rosen] Rename SparkStatusAPI to SparkStatusTracker.
d1b08d8 [Josh Rosen] Add missing newlines
2cc7353 [Josh Rosen] Add missing file.
d5eab1f [Josh Rosen] Add getActive[Stage|Job]Ids() methods.
a227984 [Josh Rosen] getJobIdsForGroup(null) should return jobs for default group
c47e294 [Josh Rosen] Remove StatusAPI mixin trait.
(cherry picked from commit 40eb8b6ef3a67e36d0d9492c044981a1da76351d)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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Httpbroadcast sets read timeout but doesn't set connection timeout.
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes #3122 from sarutak/httpbroadcast-timeout and squashes the following commits:
c7f3a56 [Kousuke Saruta] Added Connection timeout for Http Connection to HttpBroadcast.scala
(cherry picked from commit 60969b0336930449a826821a48f83f65337e8856)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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Author: zsxwing <zsxwing@gmail.com>
Closes #3226 from zsxwing/SPARK-4363 and squashes the following commits:
8109914 [zsxwing] Update the Broadcast example
(cherry picked from commit 861223ee5bea8e434a9ebb0d53f436ce23809f9c)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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It's better to change to SparkException. However, it's a breaking change since it will change the exception type.
Author: zsxwing <zsxwing@gmail.com>
Closes #3241 from zsxwing/SPARK-4379 and squashes the following commits:
409f3af [zsxwing] Change Exception to SparkException in checkpoint
(cherry picked from commit dba14058230194122a715c219e35ab8eaa786321)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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When JVM is started in a Python process, it should exit once the stdin is closed.
test: add spark.driver.memory in conf/spark-defaults.conf
```
daviesdm:~/work/spark$ cat conf/spark-defaults.conf
spark.driver.memory 8g
daviesdm:~/work/spark$ bin/pyspark
>>> quit
daviesdm:~/work/spark$ jps
4931 Jps
286
daviesdm:~/work/spark$ python wc.py
943738
0.719928026199
daviesdm:~/work/spark$ jps
286
4990 Jps
```
Author: Davies Liu <davies@databricks.com>
Closes #3274 from davies/exit and squashes the following commits:
df0e524 [Davies Liu] address comments
ce8599c [Davies Liu] address comments
050651f [Davies Liu] JVM should exit after Python exit
(cherry picked from commit 7fe08b43c78bf9e8515f671e72aa03a83ea782f8)
Signed-off-by: Andrew Or <andrew@databricks.com>
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sub-proc...
...ess ends
https://issues.apache.org/jira/browse/SPARK-4404
When we have spark.driver.extra* or spark.driver.memory in SPARK_SUBMIT_PROPERTIES_FILE, spark-class will use SparkSubmitDriverBootstrapper to launch driver.
If we get process id of SparkSubmitDriverBootstrapper and wanna kill it during its running, we expect its SparkSubmit sub-process stop also.
Author: WangTao <barneystinson@aliyun.com>
Author: WangTaoTheTonic <barneystinson@aliyun.com>
Closes #3266 from WangTaoTheTonic/killsubmit and squashes the following commits:
e03eba5 [WangTaoTheTonic] add comments
57b5ca1 [WangTao] SparkSubmitDriverBootstrapper should stop after its SparkSubmit sub-process ends
(cherry picked from commit 303a4e4d23e5cd93b541480cf88d5badb9cf9622)
Signed-off-by: Andrew Or <andrew@databricks.com>
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... executors than pending tasks need.
WIP. Still need to add and fix tests.
Author: Sandy Ryza <sandy@cloudera.com>
Closes #3204 from sryza/sandy-spark-4214 and squashes the following commits:
35cf0e0 [Sandy Ryza] Add comment
13b53df [Sandy Ryza] Review feedback
067465f [Sandy Ryza] Whitespace fix
6ae080c [Sandy Ryza] Add tests and get num pending tasks from ExecutorAllocationListener
531e2b6 [Sandy Ryza] SPARK-4214. With dynamic allocation, avoid outstanding requests for more executors than pending tasks need.
(cherry picked from commit ad42b283246b93654c5fd731cd618fee74d8c4da)
Signed-off-by: Andrew Or <andrew@databricks.com>
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Author: Jeff Hammerbacher <jeff.hammerbacher@gmail.com>
Closes #3242 from hammer/patch-1 and squashes the following commits:
f88d635 [Jeff Hammerbacher] Update failed assert text to match code in SizeEstimatorSuite
(cherry picked from commit c258db9ed4104b6eefe9f55f3e3959a3c46c2900)
Signed-off-by: Andrew Or <andrew@databricks.com>
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yarn-cluster mode
In yarn-cluster mode, the Web UI is running behind a yarn proxy server. Some features(or bugs?) of yarn proxy server will break the links for thread dump.
1. Yarn proxy server will do http redirect internally, so if opening `http://example.com:8088/cluster/app/application_1415344371838_0012/executors`, it will fetch `http://example.com:8088/cluster/app/application_1415344371838_0012/executors/` and return the content but won't change the link in the browser. Then when a user clicks `Thread Dump`, it will jump to `http://example.com:8088/proxy/application_1415344371838_0012/threadDump/?executorId=2`. This is a wrong link. The correct link should be `http://example.com:8088/proxy/application_1415344371838_0012/executors/threadDump/?executorId=2`.
Adding "/" to the tab links will fix it.
2. Yarn proxy server has a bug about the URL encode/decode. When a user accesses `http://example.com:8088/proxy/application_1415344371838_0006/executors/threadDump/?executorId=%3Cdriver%3E`, the yarn proxy server will require `http://example.com:36429/executors/threadDump/?executorId=%25253Cdriver%25253E`. But Spark web server expects `http://example.com:36429/executors/threadDump/?executorId=%3Cdriver%3E`. Related to [YARN-2844](https://issues.apache.org/jira/browse/YARN-2844).
For now, it's a tricky approach to bypass the yarn bug.
![threaddump](https://cloud.githubusercontent.com/assets/1000778/4972567/d1ccba64-68ad-11e4-983e-257530cef35a.png)
Author: zsxwing <zsxwing@gmail.com>
Closes #3183 from zsxwing/SPARK-4313 and squashes the following commits:
3379ca8 [zsxwing] Encode the executor id in the thread dump link and update the comment
abfa063 [zsxwing] Fix link issue of the executor thread dump page in yarn-cluster mode
(cherry picked from commit 156cf3333dcd93304eb5240f5a6466a3a0311957)
Signed-off-by: Andrew Or <andrew@databricks.com>
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https://issues.apache.org/jira/browse/SPARK-4380
Author: Hong Shen <hongshen@tencent.com>
Closes #3243 from shenh062326/spark_change and squashes the following commits:
4653378 [Hong Shen] Edit spilling log from MB to B
21ee960 [Hong Shen] Edit spilling log from MB to B
e9145e8 [Hong Shen] Edit spilling log from MB to B
da761c2 [Hong Shen] Edit spilling log from MB to B
946351c [Hong Shen] Edit spilling log from MB to B
(cherry picked from commit 0c56a039a9c5b871422f0fc55ff4394bc077fb34)
Signed-off-by: Andrew Or <andrew@databricks.com>
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deploying a Tachyon system locally."
This reverts commit c127ff8c87fc4f3aa6f09697928832dc6d37cc0f.
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