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* [SPARK-17346][SQL] Add Kafka source for Structured StreamingShixiong Zhu2016-10-052-1/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? This PR adds a new project ` external/kafka-0-10-sql` for Structured Streaming Kafka source. It's based on the design doc: https://docs.google.com/document/d/19t2rWe51x7tq2e5AOfrsM9qb8_m7BRuv9fel9i0PqR8/edit?usp=sharing tdas did most of work and part of them was inspired by koeninger's work. ### Introduction The Kafka source is a structured streaming data source to poll data from Kafka. The schema of reading data is as follows: Column | Type ---- | ---- key | binary value | binary topic | string partition | int offset | long timestamp | long timestampType | int The source can deal with deleting topics. However, the user should make sure there is no Spark job processing the data when deleting a topic. ### Configuration The user can use `DataStreamReader.option` to set the following configurations. Kafka Source's options | value | default | meaning ------ | ------- | ------ | ----- startingOffset | ["earliest", "latest"] | "latest" | The start point when a query is started, either "earliest" which is from the earliest offset, or "latest" which is just from the latest offset. Note: This only applies when a new Streaming query is started, and that resuming will always pick up from where the query left off. failOnDataLost | [true, false] | true | Whether to fail the query when it's possible that data is lost (e.g., topics are deleted, or offsets are out of range). This may be a false alarm. You can disable it when it doesn't work as you expected. subscribe | A comma-separated list of topics | (none) | The topic list to subscribe. Only one of "subscribe" and "subscribeParttern" options can be specified for Kafka source. subscribePattern | Java regex string | (none) | The pattern used to subscribe the topic. Only one of "subscribe" and "subscribeParttern" options can be specified for Kafka source. kafka.consumer.poll.timeoutMs | long | 512 | The timeout in milliseconds to poll data from Kafka in executors fetchOffset.numRetries | int | 3 | Number of times to retry before giving up fatch Kafka latest offsets. fetchOffset.retryIntervalMs | long | 10 | milliseconds to wait before retrying to fetch Kafka offsets Kafka's own configurations can be set via `DataStreamReader.option` with `kafka.` prefix, e.g, `stream.option("kafka.bootstrap.servers", "host:port")` ### Usage * Subscribe to 1 topic ```Scala spark .readStream .format("kafka") .option("kafka.bootstrap.servers", "host:port") .option("subscribe", "topic1") .load() ``` * Subscribe to multiple topics ```Scala spark .readStream .format("kafka") .option("kafka.bootstrap.servers", "host:port") .option("subscribe", "topic1,topic2") .load() ``` * Subscribe to a pattern ```Scala spark .readStream .format("kafka") .option("kafka.bootstrap.servers", "host:port") .option("subscribePattern", "topic.*") .load() ``` ## How was this patch tested? The new unit tests. Author: Shixiong Zhu <shixiong@databricks.com> Author: Tathagata Das <tathagata.das1565@gmail.com> Author: Shixiong Zhu <zsxwing@gmail.com> Author: cody koeninger <cody@koeninger.org> Closes #15102 from zsxwing/kafka-source.
* [SPARK-17651][SPARKR] Set R package version number along with mvnShivaram Venkataraman2016-09-231-0/+15
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? This PR sets the R package version while tagging releases. Note that since R doesn't accept `-SNAPSHOT` in version number field, we remove that while setting the next version ## How was this patch tested? Tested manually by running locally Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu> Closes #15223 from shivaram/sparkr-version-change.
* [SPARK-17583][SQL] Remove uesless rowSeparator variable and set ↵hyukjinkwon2016-09-215-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | auto-expanding buffer as default for maxCharsPerColumn option in CSV ## What changes were proposed in this pull request? This PR includes the changes below: 1. Upgrade Univocity library from 2.1.1 to 2.2.1 This includes some performance improvement and also enabling auto-extending buffer in `maxCharsPerColumn` option in CSV. Please refer the [release notes](https://github.com/uniVocity/univocity-parsers/releases). 2. Remove useless `rowSeparator` variable existing in `CSVOptions` We have this unused variable in [CSVOptions.scala#L127](https://github.com/apache/spark/blob/29952ed096fd2a0a19079933ff691671d6f00835/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/csv/CSVOptions.scala#L127) but it seems possibly causing confusion that it actually does not care of `\r\n`. For example, we have an issue open about this, [SPARK-17227](https://issues.apache.org/jira/browse/SPARK-17227), describing this variable. This variable is virtually not being used because we rely on `LineRecordReader` in Hadoop which deals with only both `\n` and `\r\n`. 3. Set the default value of `maxCharsPerColumn` to auto-expending. We are setting 1000000 for the length of each column. It'd be more sensible we allow auto-expending rather than fixed length by default. To make sure, using `-1` is being described in the release note, [2.2.0](https://github.com/uniVocity/univocity-parsers/releases/tag/v2.2.0). ## How was this patch tested? N/A Author: hyukjinkwon <gurwls223@gmail.com> Closes #15138 from HyukjinKwon/SPARK-17583.
* [SPARK-17558] Bump Hadoop 2.7 version from 2.7.2 to 2.7.3Reynold Xin2016-09-161-15/+15
| | | | | | | | | | | | ## What changes were proposed in this pull request? This patch bumps the Hadoop version in hadoop-2.7 profile from 2.7.2 to 2.7.3, which was recently released and contained a number of bug fixes. ## How was this patch tested? The change should be covered by existing tests. Author: Reynold Xin <rxin@databricks.com> Closes #15115 from rxin/SPARK-17558.
* [SPARK-17379][BUILD] Upgrade netty-all to 4.0.41 final for bug fixesAdam Roberts2016-09-155-5/+5
| | | | | | | | | | | | ## What changes were proposed in this pull request? Upgrade netty-all to latest in the 4.0.x line which is 4.0.41, mentions several bug fixes and performance improvements we may find useful, see netty.io/news/2016/08/29/4-0-41-Final-4-1-5-Final.html. Initially tried to use 4.1.5 but noticed it's not backwards compatible. ## How was this patch tested? Existing unit tests against branch-1.6 and branch-2.0 using IBM Java 8 on Intel, Power and Z architectures Author: Adam Roberts <aroberts@uk.ibm.com> Closes #14961 from a-roberts/netty.
* [SPARK-17200][PROJECT INFRA][BUILD][SPARKR] Automate building and testing on ↵hyukjinkwon2016-09-082-0/+294
| | | | | | | | | | | | | | | | | | | | | | | Windows (currently SparkR only) ## What changes were proposed in this pull request? This PR adds the build automation on Windows with [AppVeyor](https://www.appveyor.com/) CI tool. Currently, this only runs the tests for SparkR as we have been having some issues with testing Windows-specific PRs (e.g. https://github.com/apache/spark/pull/14743 and https://github.com/apache/spark/pull/13165) and hard time to verify this. One concern is, this build is dependent on [steveloughran/winutils](https://github.com/steveloughran/winutils) for pre-built Hadoop bin package (who is a Hadoop PMC member). ## How was this patch tested? Manually, https://ci.appveyor.com/project/HyukjinKwon/spark/build/88-SPARK-17200-build-profile This takes roughly 40 mins. Some tests are already being failed and this was found in https://github.com/apache/spark/pull/14743#issuecomment-241405287. Author: hyukjinkwon <gurwls223@gmail.com> Closes #14859 from HyukjinKwon/SPARK-17200-build.
* [SPARK-17378][BUILD] Upgrade snappy-java to 1.1.2.6Adam Roberts2016-09-065-5/+5
| | | | | | | | | | | | | ## What changes were proposed in this pull request? Upgrades the Snappy version to 1.1.2.6 from 1.1.2.4, release notes: https://github.com/xerial/snappy-java/blob/master/Milestone.md mention "Fix a bug in SnappyInputStream when reading compressed data that happened to have the same first byte with the stream magic header (#142)" ## How was this patch tested? Existing unit tests using the latest IBM Java 8 on Intel, Power and Z architectures (little and big-endian) Author: Adam Roberts <aroberts@uk.ibm.com> Closes #14958 from a-roberts/master.
* [SPARK-17329][BUILD] Don't build PRs with -Pyarn unless YARN code changedSean Owen2016-09-012-5/+6
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? Only build PRs with -Pyarn if YARN code was modified. ## How was this patch tested? Jenkins tests (will look to verify whether -Pyarn was included in the PR builder for this one.) Author: Sean Owen <sowen@cloudera.com> Closes #14892 from srowen/SPARK-17329.
* [SPARK-17320] add build_profile_flags entry to mesos build moduleMichael Gummelt2016-08-311-0/+1
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? add build_profile_flags entry to mesos build module ## How was this patch tested? unit tests Author: Michael Gummelt <mgummelt@mesosphere.io> Closes #14885 from mgummelt/mesos-profile.
* [SPARK-5682][CORE] Add encrypted shuffle in sparkFerdinand Xu2016-08-305-0/+5
| | | | | | | | | This patch is using Apache Commons Crypto library to enable shuffle encryption support. Author: Ferdinand Xu <cheng.a.xu@intel.com> Author: kellyzly <kellyzly@126.com> Closes #8880 from winningsix/SPARK-10771.
* [SPARK-17303] Added spark-warehouse to dev/.rat-excludesfrreiss2016-08-291-0/+1
| | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Excludes the `spark-warehouse` directory from the Apache RAT checks that src/run-tests performs. `spark-warehouse` is created by some of the Spark SQL tests, as well as by `bin/spark-sql`. ## How was this patch tested? Ran src/run-tests twice. The second time, the script failed because the first iteration Made the change in this PR. Ran src/run-tests a third time; RAT checks succeeded. Author: frreiss <frreiss@us.ibm.com> Closes #14870 from frreiss/fred-17303.
* [SPARK-16967] move mesos to moduleMichael Gummelt2016-08-266-10/+19
| | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Move Mesos code into a mvn module ## How was this patch tested? unit tests manually submitting a client mode and cluster mode job spark/mesos integration test suite Author: Michael Gummelt <mgummelt@mesosphere.io> Closes #14637 from mgummelt/mesos-module.
* [SPARK-16781][PYSPARK] java launched by PySpark as gateway may not be the ↵Sean Owen2016-08-245-5/+5
| | | | | | | | | | | | | | | | same java used in the spark environment ## What changes were proposed in this pull request? Update to py4j 0.10.3 to enable JAVA_HOME support ## How was this patch tested? Pyspark tests Author: Sean Owen <sowen@cloudera.com> Closes #14748 from srowen/SPARK-16781.
* [SPARK-14743][YARN] Add a configurable credential manager for Spark running ↵jerryshao2016-08-101-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | on YARN ## What changes were proposed in this pull request? Add a configurable token manager for Spark on running on yarn. ### Current Problems ### 1. Supported token provider is hard-coded, currently only hdfs, hbase and hive are supported and it is impossible for user to add new token provider without code changes. 2. Also this problem exits in timely token renewer and updater. ### Changes In This Proposal ### In this proposal, to address the problems mentioned above and make the current code more cleaner and easier to understand, mainly has 3 changes: 1. Abstract a `ServiceTokenProvider` as well as `ServiceTokenRenewable` interface for token provider. Each service wants to communicate with Spark through token way needs to implement this interface. 2. Provide a `ConfigurableTokenManager` to manage all the register token providers, also token renewer and updater. Also this class offers the API for other modules to obtain tokens, get renewal interval and so on. 3. Implement 3 built-in token providers `HDFSTokenProvider`, `HiveTokenProvider` and `HBaseTokenProvider` to keep the same semantics as supported today. Whether to load in these built-in token providers is controlled by configuration "spark.yarn.security.tokens.${service}.enabled", by default for all the built-in token providers are loaded. ### Behavior Changes ### For the end user there's no behavior change, we still use the same configuration `spark.yarn.security.tokens.${service}.enabled` to decide which token provider is enabled (hbase or hive). For user implemented token provider (assume the name of token provider is "test") needs to add into this class should have two configurations: 1. `spark.yarn.security.tokens.test.enabled` to true 2. `spark.yarn.security.tokens.test.class` to the full qualified class name. So we still keep the same semantics as current code while add one new configuration. ### Current Status ### - [x] token provider interface and management framework. - [x] implement built-in token providers (hdfs, hbase, hive). - [x] Coverage of unit test. - [x] Integrated test with security cluster. ## How was this patch tested? Unit test and integrated test. Please suggest and review, any comment is greatly appreciated. Author: jerryshao <sshao@hortonworks.com> Closes #14065 from jerryshao/SPARK-16342.
* [SPARK-16770][BUILD] Fix JLine dependency management and version (Sca…Stefan Schulze2016-08-035-5/+5
| | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? As of Scala 2.11.x there is no longer a org.scala-lang:jline version aligned to the scala version itself. Scala console now uses the plain jline:jline module. Spark's dependency management did not reflect this change properly, causing Maven to pull in Jline via transitive dependency. Unfortunately Jline 2.12 contained a minor but very annoying bug rendering the shell almost useless for developers with german keyboard layout. This request contains the following chages: - Exclude transitive dependency 'jline:jline' from hive-exec module - Remove global properties 'jline.version' and 'jline.groupId' - Add both properties and dependency to 'scala-2.11' profile - Add explicit dependency on 'jline:jline' to module 'spark-repl' ## How was this patch tested? - Running mvn dependency:tree and checking for correct Jline version 2.12.1 - Running full builds with assembly and checking for jline-2.12.1.jar in 'lib' folder of generated tarball Author: Stefan Schulze <stefan.schulze@pentasys.de> Closes #14429 from stsc-pentasys/SPARK-16770.
* [SPARK-16637] Unified containerizerMichael Gummelt2016-07-295-5/+5
| | | | | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? New config var: spark.mesos.docker.containerizer={"mesos","docker" (default)} This adds support for running docker containers via the Mesos unified containerizer: http://mesos.apache.org/documentation/latest/container-image/ The benefit is losing the dependency on `dockerd`, and all the costs which it incurs. I've also updated the supported Mesos version to 0.28.2 for support of the required protobufs. This is blocked on: https://github.com/apache/spark/pull/14167 ## How was this patch tested? - manually testing jobs submitted with both "mesos" and "docker" settings for the new config var. - spark/mesos integration test suite Author: Michael Gummelt <mgummelt@mesosphere.io> Closes #14275 from mgummelt/unified-containerizer.
* [SPARK-16751] Upgrade derby to 10.12.1.1Adam Roberts2016-07-295-5/+5
| | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Version of derby upgraded based on important security info at VersionEye. Test scope added so we don't include it in our final package anyway. NB: I think this should be backported to all previous releases as it is a security problem https://www.versioneye.com/java/org.apache.derby:derby/10.11.1.1 The CVE number is 2015-1832. I also suggest we add a SECURITY tag for JIRAs ## How was this patch tested? Existing tests with the change making sure that we see no new failures. I checked derby 10.12.x and not derby 10.11.x is downloaded to our ~/.m2 folder. I then used dev/make-distribution.sh and checked the dist/jars folder for Spark 2.0: no derby jar is present. I don't know if this would also remove it from the assembly jar in our 1.x branches. Author: Adam Roberts <aroberts@uk.ibm.com> Closes #14379 from a-roberts/patch-4.
* [SPARK-15271][MESOS] Allow force pulling executor docker imagesPhilipp Hoffmann2016-07-265-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? (Please fill in changes proposed in this fix) ## How was this patch tested? (Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests) (If this patch involves UI changes, please attach a screenshot; otherwise, remove this) Mesos agents by default will not pull docker images which are cached locally already. In order to run Spark executors from mutable tags like `:latest` this commit introduces a Spark setting (`spark.mesos.executor.docker.forcePullImage`). Setting this flag to true will tell the Mesos agent to force pull the docker image (default is `false` which is consistent with the previous implementation and Mesos' default behaviour). Author: Philipp Hoffmann <mail@philipphoffmann.de> Closes #14348 from philipphoffmann/force-pull-image.
* Revert "[SPARK-15271][MESOS] Allow force pulling executor docker images"Josh Rosen2016-07-255-5/+5
| | | | This reverts commit 978cd5f125eb5a410bad2e60bf8385b11cf1b978.
* [SPARK-15271][MESOS] Allow force pulling executor docker imagesPhilipp Hoffmann2016-07-255-5/+5
| | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Mesos agents by default will not pull docker images which are cached locally already. In order to run Spark executors from mutable tags like `:latest` this commit introduces a Spark setting `spark.mesos.executor.docker.forcePullImage`. Setting this flag to true will tell the Mesos agent to force pull the docker image (default is `false` which is consistent with the previous implementation and Mesos' default behaviour). ## How was this patch tested? I ran a sample application including this change on a Mesos cluster and verified the correct behaviour for both, with and without, force pulling the executor image. As expected the image is being force pulled if the flag is set. Author: Philipp Hoffmann <mail@philipphoffmann.de> Closes #13051 from philipphoffmann/force-pull-image.
* [SPARK-16685] Remove audit-release scripts.Reynold Xin2016-07-2524-1020/+0
| | | | | | | | | | | | ## What changes were proposed in this pull request? This patch removes dev/audit-release. It was initially created to do basic release auditing. They have been unused by for the last one year+. ## How was this patch tested? N/A Author: Reynold Xin <rxin@databricks.com> Closes #14342 from rxin/SPARK-16685.
* [SPARK-16494][ML] Upgrade breeze version to 0.12Yanbo Liang2016-07-195-10/+15
| | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? breeze 0.12 has been released for more than half a year, and it brings lots of new features, performance improvement and bug fixes. One of the biggest features is ```LBFGS-B``` which is an implementation of ```LBFGS``` with box constraints and much faster for some special case. We would like to implement Huber loss function for ```LinearRegression``` ([SPARK-3181](https://issues.apache.org/jira/browse/SPARK-3181)) and it requires ```LBFGS-B``` as the optimization solver. So we should bump up the dependent breeze version to 0.12. For more features, improvements and bug fixes of breeze 0.12, you can refer the following link: https://groups.google.com/forum/#!topic/scala-breeze/nEeRi_DcY5c ## How was this patch tested? No new tests, should pass the existing ones. Author: Yanbo Liang <ybliang8@gmail.com> Closes #14150 from yanboliang/spark-16494.
* [SPARK-16507][SPARKR] Add a CRAN checker, fix Rd aliasesShivaram Venkataraman2016-07-161-0/+1
| | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Add a check-cran.sh script that runs `R CMD check` as CRAN. Also fixes a number of issues pointed out by the check. These include - Updating `DESCRIPTION` to be appropriate - Adding a .Rbuildignore to ignore lintr, src-native, html that are non-standard files / dirs - Adding aliases to all S4 methods in DataFrame, Column, GroupedData etc. This is required as stated in https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Documenting-S4-classes-and-methods - Other minor fixes ## How was this patch tested? SparkR unit tests, running the above mentioned script Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu> Closes #14173 from shivaram/sparkr-cran-changes.
* [SPARK-15467][BUILD] update janino version to 3.0.0Kazuaki Ishizaki2016-07-105-5/+5
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? This PR updates version of Janino compiler from 2.7.8 to 3.0.0. This version fixes [an Janino issue](https://github.com/janino-compiler/janino/issues/1) that fixes [an issue](https://issues.apache.org/jira/browse/SPARK-15467), which throws Java exception, in Spark. ## How was this patch tested? Manually tested using a program in [the JIRA entry](https://issues.apache.org/jira/browse/SPARK-15467) Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Closes #14127 from kiszk/SPARK-15467.
* [SPARK-16453][BUILD] release-build.sh is missing hive-thriftserver for scala ↵Yin Huai2016-07-081-5/+3
| | | | | | | | | | | 2.10 ## What changes were proposed in this pull request? This PR adds hive-thriftserver profile to scala 2.10 build created by release-build.sh. Author: Yin Huai <yhuai@databricks.com> Closes #14108 from yhuai/SPARK-16453.
* [SPARK-15975] Fix improper Popen retcode code handling in dev/run-testsJosh Rosen2016-06-162-2/+5
| | | | | | | | | | In the `dev/run-tests.py` script we check a `Popen.retcode` for success using `retcode > 0`, but this is subtlety wrong because Popen's return code will be negative if the child process was terminated by a signal: https://docs.python.org/2/library/subprocess.html#subprocess.Popen.returncode In order to properly handle signals, we should change this to check `retcode != 0` instead. Author: Josh Rosen <joshrosen@databricks.com> Closes #13692 from JoshRosen/dev-run-tests-return-code-handling.
* [SPARK-15935][PYSPARK] Fix a wrong format tag in the error messageShixiong Zhu2016-06-141-1/+1
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? A follow up PR for #13655 to fix a wrong format tag. ## How was this patch tested? Jenkins unit tests. Author: Shixiong Zhu <shixiong@databricks.com> Closes #13665 from zsxwing/fix.
* [SPARK-15821][DOCS] Include parallel build infoAdam Roberts2016-06-141-2/+2
| | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? We should mention that users can build Spark using multiple threads to decrease build times; either here or in "Building Spark" ## How was this patch tested? Built on machines with between one core to 192 cores using mvn -T 1C and observed faster build times with no loss in stability In response to the question here https://issues.apache.org/jira/browse/SPARK-15821 I think we should suggest this option as we know it works for Spark and can result in faster builds Author: Adam Roberts <aroberts@uk.ibm.com> Closes #13562 from a-roberts/patch-3.
* [SPARK-15935][PYSPARK] Enable test for sql/streaming.py and fix these testsShixiong Zhu2016-06-141-0/+1
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? This PR just enables tests for sql/streaming.py and also fixes the failures. ## How was this patch tested? Existing unit tests. Author: Shixiong Zhu <shixiong@databricks.com> Closes #13655 from zsxwing/python-streaming-test.
* [SPARK-15818][BUILD] Upgrade to Hadoop 2.7.2Adam Roberts2016-06-093-45/+45
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Updating the Hadoop version from 2.7.0 to 2.7.2 if we use the Hadoop-2.7 build profile ## How was this patch tested? (Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests) Existing tests (If this patch involves UI changes, please attach a screenshot; otherwise, remove this) I'd like us to use Hadoop 2.7.2 owing to the Hadoop release notes stating Hadoop 2.7.0 is not ready for production use https://hadoop.apache.org/docs/r2.7.0/ states "Apache Hadoop 2.7.0 is a minor release in the 2.x.y release line, building upon the previous stable release 2.6.0. This release is not yet ready for production use. Production users should use 2.7.1 release and beyond." Hadoop 2.7.1 release notes: "Apache Hadoop 2.7.1 is a minor release in the 2.x.y release line, building upon the previous release 2.7.0. This is the next stable release after Apache Hadoop 2.6.x." And then Hadoop 2.7.2 release notes: "Apache Hadoop 2.7.2 is a minor release in the 2.x.y release line, building upon the previous stable release 2.7.1." I've tested this is OK with Intel hardware and IBM Java 8 so let's test it with OpenJDK, ideally this will be pushed to branch-2.0 and master. Author: Adam Roberts <aroberts@uk.ibm.com> Closes #13556 from a-roberts/patch-2.
* [SPARK-12712] Fix failure in ./dev/test-dependencies when run against empty ↵Josh Rosen2016-06-091-1/+1
| | | | | | | | | | | | | | | | | .m2 cache This patch fixes a bug in `./dev/test-dependencies.sh` which caused spurious failures when the script was run on a machine with an empty `.m2` cache. The problem was that extra log output from the dependency download was conflicting with the grep / regex used to identify the classpath in the Maven output. This patch fixes this issue by adjusting the regex pattern. Tested manually with the following reproduction of the bug: ``` rm -rf ~/.m2/repository/org/apache/commons/ ./dev/test-dependencies.sh ``` Author: Josh Rosen <joshrosen@databricks.com> Closes #13568 from JoshRosen/SPARK-12712.
* [MINOR] Fix Java Lint errors introduced by #13286 and #13280Sandeep Singh2016-06-081-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? revived #13464 Fix Java Lint errors introduced by #13286 and #13280 Before: ``` Using `mvn` from path: /Users/pichu/Project/spark/build/apache-maven-3.3.9/bin/mvn Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512M; support was removed in 8.0 Checkstyle checks failed at following occurrences: [ERROR] src/main/java/org/apache/spark/launcher/LauncherServer.java:[340,5] (whitespace) FileTabCharacter: Line contains a tab character. [ERROR] src/main/java/org/apache/spark/launcher/LauncherServer.java:[341,5] (whitespace) FileTabCharacter: Line contains a tab character. [ERROR] src/main/java/org/apache/spark/launcher/LauncherServer.java:[342,5] (whitespace) FileTabCharacter: Line contains a tab character. [ERROR] src/main/java/org/apache/spark/launcher/LauncherServer.java:[343,5] (whitespace) FileTabCharacter: Line contains a tab character. [ERROR] src/main/java/org/apache/spark/sql/streaming/OutputMode.java:[41,28] (naming) MethodName: Method name 'Append' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'. [ERROR] src/main/java/org/apache/spark/sql/streaming/OutputMode.java:[52,28] (naming) MethodName: Method name 'Complete' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'. [ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/SpecificParquetRecordReaderBase.java:[61,8] (imports) UnusedImports: Unused import - org.apache.parquet.schema.PrimitiveType. [ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/SpecificParquetRecordReaderBase.java:[62,8] (imports) UnusedImports: Unused import - org.apache.parquet.schema.Type. ``` ## How was this patch tested? ran `dev/lint-java` locally Author: Sandeep Singh <sandeep@techaddict.me> Closes #13559 from techaddict/minor-3.
* Revert "[SPARK-11753][SQL][TEST-HADOOP2.2] Make allowNonNumericNumbers ↵Shixiong Zhu2016-05-315-30/+30
| | | | | | | | | | | | | | | | option work ## What changes were proposed in this pull request? This reverts commit c24b6b679c3efa053f7de19be73eb36dc70d9930. Sent a PR to run Jenkins tests due to the revert conflicts of `dev/deps/spark-deps-hadoop*`. ## How was this patch tested? Jenkins unit tests, integration tests, manual tests) Author: Shixiong Zhu <shixiong@databricks.com> Closes #13417 from zsxwing/revert-SPARK-11753.
* [SPARK-9876][SQL] Update Parquet to 1.8.1.Ryan Blue2016-05-275-30/+25
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? This includes minimal changes to get Spark using the current release of Parquet, 1.8.1. ## How was this patch tested? This uses the existing Parquet tests. Author: Ryan Blue <blue@apache.org> Closes #13280 from rdblue/SPARK-9876-update-parquet.
* [SPARK-15523][ML][MLLIB] Update JPMML to 1.2.15Villu Ruusmann2016-05-265-15/+10
| | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? See https://issues.apache.org/jira/browse/SPARK-15523 This PR replaces PR #13293. It's isolated to a new branch, and contains some more squashed changes. ## How was this patch tested? 1. Executed `mvn clean package` in `mllib` directory 2. Executed `dev/test-dependencies.sh --replace-manifest` in the root directory. Author: Villu Ruusmann <villu.ruusmann@gmail.com> Closes #13297 from vruusmann/update-jpmml.
* [SPARK-15525][SQL][BUILD] Upgrade ANTLR4 SBT pluginHerman van Hovell2016-05-255-5/+5
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? The ANTLR4 SBT plugin has been moved from its own repo to one on bintray. The version was also changed from `0.7.10` to `0.7.11`. The latter actually broke our build (ihji has fixed this by also adding `0.7.10` and others to the bin-tray repo). This PR upgrades the SBT-ANTLR4 plugin and ANTLR4 to their most recent versions (`0.7.11`/`4.5.3`). I have also removed a few obsolete build configurations. ## How was this patch tested? Manually running SBT/Maven builds. Author: Herman van Hovell <hvanhovell@questtec.nl> Closes #13299 from hvanhovell/SPARK-15525.
* [SPARK-15493][SQL] default QuoteEscapingEnabled flag to true when writing CSVJurriaan Pruis2016-05-255-5/+5
| | | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Default QuoteEscapingEnabled flag to true when writing CSV and add an escapeQuotes option to be able to change this. See https://github.com/uniVocity/univocity-parsers/blob/f3eb2af26374940e60d91d1703bde54619f50c51/src/main/java/com/univocity/parsers/csv/CsvWriterSettings.java#L231-L247 This change is needed to be able to write RFC 4180 compatible CSV files (https://tools.ietf.org/html/rfc4180#section-2) https://issues.apache.org/jira/browse/SPARK-15493 ## How was this patch tested? Added a test that verifies the output is quoted correctly. Author: Jurriaan Pruis <email@jurriaanpruis.nl> Closes #13267 from jurriaan/quote-escaping.
* [SPARK-11753][SQL][TEST-HADOOP2.2] Make allowNonNumericNumbers option workLiang-Chi Hsieh2016-05-245-25/+30
| | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Jackson suppprts `allowNonNumericNumbers` option to parse non-standard non-numeric numbers such as "NaN", "Infinity", "INF". Currently used Jackson version (2.5.3) doesn't support it all. This patch upgrades the library and make the two ignored tests in `JsonParsingOptionsSuite` passed. ## How was this patch tested? `JsonParsingOptionsSuite`. Author: Liang-Chi Hsieh <simonh@tw.ibm.com> Author: Liang-Chi Hsieh <viirya@appier.com> Closes #9759 from viirya/fix-json-nonnumric.
* [SPARK-15424][SPARK-15437][SPARK-14807][SQL] Revert Create a ↵Reynold Xin2016-05-202-13/+1
| | | | | | | | | | | | | | hivecontext-compatibility module ## What changes were proposed in this pull request? I initially asked to create a hivecontext-compatibility module to put the HiveContext there. But we are so close to Spark 2.0 release and there is only a single class in it. It seems overkill to have an entire package, which makes it more inconvenient, for a single class. ## How was this patch tested? Tests were moved. Author: Reynold Xin <rxin@databricks.com> Closes #13207 from rxin/SPARK-15424.
* [SPARK-15078] [SQL] Add all TPCDS 1.4 benchmark queries for SparkSQLSameer Agarwal2016-05-201-0/+1
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? Now that SparkSQL supports all TPC-DS queries, this patch adds all 99 benchmark queries inside SparkSQL. ## How was this patch tested? Benchmark only Author: Sameer Agarwal <sameer@databricks.com> Closes #13188 from sameeragarwal/tpcds-all.
* [SPARK-14615][ML] Use the new ML Vector and Matrix in the ML pipeline based ↵DB Tsai2016-05-171-0/+1
| | | | | | | | | | | | | | | | | | algorithms ## What changes were proposed in this pull request? Once SPARK-14487 and SPARK-14549 are merged, we will migrate to use the new vector and matrix type in the new ml pipeline based apis. ## How was this patch tested? Unit tests Author: DB Tsai <dbt@netflix.com> Author: Liang-Chi Hsieh <simonh@tw.ibm.com> Author: Xiangrui Meng <meng@databricks.com> Closes #12627 from dbtsai/SPARK-14615-NewML.
* [SPARK-15290][BUILD] Move annotations, like @Since / @DeveloperApi, into ↵Sean Owen2016-05-171-6/+13
| | | | | | | | | | | | | | | | | | spark-tags ## What changes were proposed in this pull request? (See https://github.com/apache/spark/pull/12416 where most of this was already reviewed and committed; this is just the module structure and move part. This change does not move the annotations into test scope, which was the apparently problem last time.) Rename `spark-test-tags` -> `spark-tags`; move common annotations like `Since` to `spark-tags` ## How was this patch tested? Jenkins tests. Author: Sean Owen <sowen@cloudera.com> Closes #13074 from srowen/SPARK-15290.
* [SPARK-12972][CORE][TEST-MAVEN][TEST-HADOOP2.2] Update ↵Sean Owen2016-05-161-1/+1
| | | | | | | | | | | | | | | | org.apache.httpcomponents.httpclient, commons-io ## What changes were proposed in this pull request? This is sort of a hot-fix for https://github.com/apache/spark/pull/13117, but, the problem is limited to Hadoop 2.2. The change is to manage `commons-io` to 2.4 for all Hadoop builds, which is only a net change for Hadoop 2.2, which was using 2.1. ## How was this patch tested? Jenkins tests -- normal PR builder, then the `[test-hadoop2.2] [test-maven]` if successful. Author: Sean Owen <sowen@cloudera.com> Closes #13132 from srowen/SPARK-12972.3.
* [SPARK-12972][CORE] Update org.apache.httpcomponents.httpclientSean Owen2016-05-155-10/+10
| | | | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? (Retry of https://github.com/apache/spark/pull/13049) - update to httpclient 4.5 / httpcore 4.4 - remove some defunct exclusions - manage httpmime version to match - update selenium / httpunit to support 4.5 (possible now that Jetty 9 is used) ## How was this patch tested? Jenkins tests. Also, locally running the same test command of one Jenkins profile that failed: `mvn -Phadoop-2.6 -Pyarn -Phive -Phive-thriftserver -Pkinesis-asl ...` Author: Sean Owen <sowen@cloudera.com> Closes #13117 from srowen/SPARK-12972.2.
* Revert "[SPARK-12972][CORE] Update org.apache.httpcomponents.httpclient"Sean Owen2016-05-135-10/+10
| | | | This reverts commit c74a6c3f2363f065a4915fdadec5eff665fa02e7.
* [SPARK-12972][CORE] Update org.apache.httpcomponents.httpclientSean Owen2016-05-135-10/+10
| | | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? - update httpcore/httpclient to latest - centralize version management - remove excludes that are no longer relevant according to SBT/Maven dep graphs - also manage httpmime to match httpclient ## How was this patch tested? Jenkins tests, plus review of dependency graphs from SBT/Maven, and review of test-dependencies.sh output Author: Sean Owen <sowen@cloudera.com> Closes #13049 from srowen/SPARK-12972.
* [SPARK-15061][PYSPARK] Upgrade to Py4J 0.10.1Holden Karau2016-05-135-5/+5
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? This upgrades to Py4J 0.10.1 which reduces syscal overhead in Java gateway ( see https://github.com/bartdag/py4j/issues/201 ). Related https://issues.apache.org/jira/browse/SPARK-6728 . ## How was this patch tested? Existing doctests & unit tests pass Author: Holden Karau <holden@us.ibm.com> Closes #13064 from holdenk/SPARK-15061-upgrade-to-py4j-0.10.1.
* [SPARK-14897][SQL] upgrade to jetty 9.2.16bomeng2016-05-125-10/+10
| | | | | | | | | | | | | | | | ## What changes were proposed in this pull request? Since Jetty 8 is EOL (end of life) and has critical security issue [http://www.securityweek.com/critical-vulnerability-found-jetty-web-server], I think upgrading to 9 is necessary. I am using latest 9.2 since 9.3 requires Java 8+. `javax.servlet` and `derby` were also upgraded since Jetty 9.2 needs corresponding version. ## How was this patch tested? Manual test and current test cases should cover it. Author: bomeng <bmeng@us.ibm.com> Closes #12916 from bomeng/SPARK-14897.
* [SPARK-15171][SQL] Deprecate registerTempTable and add dataset.createTempViewSean Zhong2016-05-121-2/+2
| | | | | | | | | | | | | | ## What changes were proposed in this pull request? Deprecates registerTempTable and add dataset.createTempView, dataset.createOrReplaceTempView. ## How was this patch tested? Unit tests. Author: Sean Zhong <seanzhong@databricks.com> Closes #12945 from clockfly/spark-15171.
* [SPARK-15072][SQL][PYSPARK] FollowUp: Remove SparkSession.withHiveSupport in ↵Sandeep Singh2016-05-111-3/+5
| | | | | | | | | | | | | | | PySpark ## What changes were proposed in this pull request? This is a followup of https://github.com/apache/spark/pull/12851 Remove `SparkSession.withHiveSupport` in PySpark and instead use `SparkSession.builder. enableHiveSupport` ## How was this patch tested? Existing tests. Author: Sandeep Singh <sandeep@techaddict.me> Closes #13063 from techaddict/SPARK-15072-followup.
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