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## What changes were proposed in this pull request?
There are many locations in the Spark repo where the same word occurs consecutively. Sometimes they are appropriately placed, but many times they are not. This PR removes the inappropriately duplicated words.
## How was this patch tested?
N/A since only docs or comments were updated.
Author: Niranjan Padmanabhan <niranjan.padmanabhan@gmail.com>
Closes #16455 from neurons/np.structure_streaming_doc.
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## What changes were proposed in this pull request?
Made DataFrame-based API primary
* Spark doc menu bar and other places now link to ml-guide.html, not mllib-guide.html
* mllib-guide.html keeps RDD-specific list of features, with a link at the top redirecting people to ml-guide.html
* ml-guide.html includes a "maintenance mode" announcement about the RDD-based API
* **Reviewers: please check this carefully**
* (minor) Titles for DF API no longer include "- spark.ml" suffix. Titles for RDD API have "- RDD-based API" suffix
* Moved migration guide to ml-guide from mllib-guide
* Also moved past guides from mllib-migration-guides to ml-migration-guides, with a redirect link on mllib-migration-guides
* **Reviewers**: I did not change any of the content of the migration guides.
Reorganized DataFrame-based guide:
* ml-guide.html mimics the old mllib-guide.html page in terms of content: overview, migration guide, etc.
* Moved Pipeline description into ml-pipeline.html and moved tuning into ml-tuning.html
* **Reviewers**: I did not change the content of these guides, except some intro text.
* Sidebar remains the same, but with pipeline and tuning sections added
Other:
* ml-classification-regression.html: Moved text about linear methods to new section in page
## How was this patch tested?
Generated docs locally
Author: Joseph K. Bradley <joseph@databricks.com>
Closes #14213 from jkbradley/ml-guide-2.0.
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## What changes were proposed in this pull request?
This issue fixes all broken links on Spark 2.0 preview MLLib documents. Also, this contains some editorial change.
**Fix broken links**
* mllib-data-types.md
* mllib-decision-tree.md
* mllib-ensembles.md
* mllib-feature-extraction.md
* mllib-pmml-model-export.md
* mllib-statistics.md
**Fix malformed section header and scala coding style**
* mllib-linear-methods.md
**Replace indirect forward links with direct one**
* ml-classification-regression.md
## How was this patch tested?
Manual tests (with `cd docs; jekyll build`.)
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes #13608 from dongjoon-hyun/SPARK-15883.
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mllib-statistics.md using include_example
## What changes were proposed in this pull request?
This PR for ticket SPARK-13019 is based on previous PR(https://github.com/apache/spark/pull/11108).
Since PR(https://github.com/apache/spark/pull/11108) is breaking scala-2.10 build, more work is needed to fix build errors.
What I did new in this PR is adding keyword argument for 'fractions':
` val approxSample = data.sampleByKey(withReplacement = false, fractions = fractions)`
` val exactSample = data.sampleByKeyExact(withReplacement = false, fractions = fractions)`
I reopened ticket on JIRA but sorry I don't know how to reopen a GitHub pull request, so I just submitting a new pull request.
## How was this patch tested?
Manual build testing on local machine, build based on scala-2.10.
Author: Xin Ren <iamshrek@126.com>
Closes #11901 from keypointt/SPARK-13019.
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using include_example"
This reverts commit 1af8de200c4d3357bcb09e7bbc6deece00e885f2.
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include_example
https://issues.apache.org/jira/browse/SPARK-13019
The example code in the user guide is embedded in the markdown and hence it is not easy to test. It would be nice to automatically test them. This JIRA is to discuss options to automate example code testing and see what we can do in Spark 1.6.
Goal is to move actual example code to spark/examples and test compilation in Jenkins builds. Then in the markdown, we can reference part of the code to show in the user guide. This requires adding a Jekyll tag that is similar to https://github.com/jekyll/jekyll/blob/master/lib/jekyll/tags/include.rb, e.g., called include_example.
`{% include_example scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala %}`
Jekyll will find `examples/src/main/scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala` and pick code blocks marked "example" and replace code block in
`{% highlight %}`
in the markdown.
See more sub-tasks in parent ticket: https://issues.apache.org/jira/browse/SPARK-11337
Author: Xin Ren <iamshrek@126.com>
Closes #11108 from keypointt/SPARK-13019.
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## What changes were proposed in this pull request?
Add the java example of StreamingTest
## How was this patch tested?
manual tests in CLI: bin/run-example mllib.JavaStreamingTestExample dataDir 5 100
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes #11776 from zhengruifeng/streaming_je.
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spark.mllib and mllib in the documentation.
Replaces a number of occurences of `MLlib` in the documentation that were meant to refer to the `spark.mllib` package instead. It should clarify for new users the difference between `spark.mllib` (the package) and MLlib (the umbrella project for ML in spark).
It also removes some files that I forgot to delete with #10207
Author: Timothy Hunter <timhunter@databricks.com>
Closes #10234 from thunterdb/12212.
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CC jkbradley mengxr josepablocam
Author: Feynman Liang <feynman.liang@gmail.com>
Closes #10005 from feynmanliang/streaming-test-user-guide.
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generation documentation
Fix Python example to use normalRDD as advertised
Author: Sean Owen <sowen@cloudera.com>
Closes #9529 from srowen/SPARK-11476.
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spark.mllib
In the Markdown docs for the spark.mllib Programming Guide, we have code examples with codetabs for each language. We should link to each language's API docs within the corresponding codetab, but we are inconsistent about this. For an example of what we want to do, see the "ChiSqSelector" section in https://github.com/apache/spark/blob/64743870f23bffb8d96dcc8a0181c1452782a151/docs/mllib-feature-extraction.md
This JIRA is just for spark.mllib, not spark.ml.
Please let me know if more work is needed, thanks a lot.
Author: Xin Ren <iamshrek@126.com>
Closes #8977 from keypointt/SPARK-10669.
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KS test
added doc examples for python.
Author: jose.cambronero <jose.cambronero@cloudera.com>
Closes #8154 from josepablocam/spark_9902.
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Author: Sandy Ryza <sandy@cloudera.com>
Closes #8230 from sryza/sandy-spark-7707.
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code uses deprecated print statement
Use print(x) not print x for Python 3 in eval examples
CC sethah mengxr -- just wanted to close this out before 1.5
Author: Sean Owen <sowen@cloudera.com>
Closes #7822 from srowen/SPARK-9490 and squashes the following commits:
01abeba [Sean Owen] Change "print x" to "print(x)" in the rest of the docs too
bd7f7fb [Sean Owen] Use print(x) not print x for Python 3 in eval examples
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Smirnov Test for RDDs
This contribution is my original work and I license it to the project under it's open source license.
Author: jose.cambronero <jose.cambronero@cloudera.com>
Closes #6994 from josepablocam/master and squashes the following commits:
bbb30b1 [jose.cambronero] renamed KSTestResult to KolmogorovSmirnovTestResult, to stay consistent with method name
0d0c201 [jose.cambronero] kstTest -> kolmogorovSmirnovTest in statistics.md
1f56371 [jose.cambronero] changed ksTest in public API to kolmogorovSmirnovTest for clarity
a48ae7b [jose.cambronero] refactor code to account for serializable RealDistribution. Reuse testOneSample( _, cdf)
1bb44bd [jose.cambronero] style and doc changes. Factored out ks test into 2 separate tests
2ec2aa6 [jose.cambronero] initialize to stdnormal when no params passed (and log). Change unit tests to approximate equivalence rather than strict
a4bc0c7 [jose.cambronero] changed ksTest(data, distName) to ksTest(data, distName, params*) after api discussions. Changed tests and docs accordingly
7e66f57 [jose.cambronero] copied implementation note to public api docs, and added @see for links to wiki info
e760ebd [jose.cambronero] line length changes to fit style check
3288e42 [jose.cambronero] addressed style changes, correctness change to simpler approach, and fixed edge case for foldLeft in searchOneSampleCandidates when a partition is empty
9026895 [jose.cambronero] addressed style changes, correctness change to simpler approach, and fixed edge case for foldLeft in searchOneSampleCandidates when a partition is empty
1226b30 [jose.cambronero] reindent multi-line lambdas, prior intepretation of style guide was wrong on my part
9c0f1af [jose.cambronero] additional style changes incorporated and added documentation to mllib statistics docs
3f81ad2 [jose.cambronero] renamed ks1 sample test for clarity
992293b [jose.cambronero] Style changes as per comments and added implementation note explaining the distributed approach.
6a4784f [jose.cambronero] specified what distributions are available for the convenience method ksTest(data, name) (solely standard normal)
4b8ba61 [jose.cambronero] fixed off by 1/N in cases when post-constant adjustment ecdf is above cdf, but prior to adj it was below
0b5e8ec [jose.cambronero] changed KS one sample test to perform just 1 distributed pass (in addition to the sorting pass), operates on each partition separately. Implementation of Sandy Ryza's algorithm
16b5c4c [jose.cambronero] renamed dat to data and eliminated recalc of RDD size by sharing as argument between empirical and evalOneSampleP
c18dc66 [jose.cambronero] removed ksTestOpt from API and changed comments in HypothesisTestSuite accordingly
f6951b6 [jose.cambronero] changed style and some comments based on feedback from pull request
b9cff3a [jose.cambronero] made small changes to pass style check
ce8e9a1 [jose.cambronero] added kstest testing in HypothesisTestSuite
4da189b [jose.cambronero] added user facing ks test functions
c659ea1 [jose.cambronero] created KS test class
13dfe4d [jose.cambronero] created test result class for ks test
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Author: Kamil Smuga <smugakamil@gmail.com>
Author: stderr <smugakamil@gmail.com>
Closes #5120 from kamilsmuga/master and squashes the following commits:
fee3281 [Kamil Smuga] more python api links fixed for docs
13240cb [Kamil Smuga] resolved merge conflicts with upstream/master
6649b3b [Kamil Smuga] fix broken docs links to Python API
92f03d7 [stderr] Fix links to pyspark api
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```
pyspark.mllib.stat.StatisticschiSqTest(observed, expected=None)
:: Experimental ::
If `observed` is Vector, conduct Pearson's chi-squared goodness
of fit test of the observed data against the expected distribution,
or againt the uniform distribution (by default), with each category
having an expected frequency of `1 / len(observed)`.
(Note: `observed` cannot contain negative values)
If `observed` is matrix, conduct Pearson's independence test on the
input contingency matrix, which cannot contain negative entries or
columns or rows that sum up to 0.
If `observed` is an RDD of LabeledPoint, conduct Pearson's independence
test for every feature against the label across the input RDD.
For each feature, the (feature, label) pairs are converted into a
contingency matrix for which the chi-squared statistic is computed.
All label and feature values must be categorical.
:param observed: it could be a vector containing the observed categorical
counts/relative frequencies, or the contingency matrix
(containing either counts or relative frequencies),
or an RDD of LabeledPoint containing the labeled dataset
with categorical features. Real-valued features will be
treated as categorical for each distinct value.
:param expected: Vector containing the expected categorical counts/relative
frequencies. `expected` is rescaled if the `expected` sum
differs from the `observed` sum.
:return: ChiSquaredTest object containing the test statistic, degrees
of freedom, p-value, the method used, and the null hypothesis.
```
Author: Davies Liu <davies@databricks.com>
Closes #3091 from davies/his and squashes the following commits:
145d16c [Davies Liu] address comments
0ab0764 [Davies Liu] fix float
5097d54 [Davies Liu] add Hypothesis test Python API
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Thare are some inconsistent spellings 'MLlib' and 'MLLib' in some documents and source codes.
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes #2903 from sarutak/SPARK-4055 and squashes the following commits:
b031640 [Kousuke Saruta] Fixed inconsistent spelling "MLlib and MLLib"
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1. renamed mllib-basics to mllib-data-types
1. renamed mllib-stats to mllib-statistics
1. moved random data generation to the bottom of mllib-stats
1. updated toc accordingly
atalwalkar
Author: Xiangrui Meng <meng@databricks.com>
Closes #2151 from mengxr/mllib-doc-1.1 and squashes the following commits:
0bd79f3 [Xiangrui Meng] add mllib-data-types
b64a5d7 [Xiangrui Meng] update the content list of basis statistics in mllib-guide
f625cc2 [Xiangrui Meng] move mllib-basics to mllib-data-types
4d69250 [Xiangrui Meng] move random data generation to the bottom of statistics
e64f3ce [Xiangrui Meng] move mllib-stats.md to mllib-statistics.md
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