| Commit message (Collapse) | Author | Age | Files | Lines |
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Author: zsxwing <zsxwing@gmail.com>
Closes #6830 from zsxwing/flume-python and squashes the following commits:
78dfdac [zsxwing] Fix the compile error in the test code
f1bf3c0 [zsxwing] Address TD's comments
0449723 [zsxwing] Add sbt goal streaming-flume-assembly/assembly
e93736b [zsxwing] Fix the test case for determine_modules_to_test
9d5821e [zsxwing] Fix pyspark_core dependencies
f9ee681 [zsxwing] Merge branch 'master' into flume-python
7a55837 [zsxwing] Add streaming_flume_assembly to run-tests.py
b96b0de [zsxwing] Merge branch 'master' into flume-python
ce85e83 [zsxwing] Fix incompatible issues for Python 3
01cbb3d [zsxwing] Add import sys
152364c [zsxwing] Fix the issue that StringIO doesn't work in Python 3
14ba0ff [zsxwing] Add flume-assembly for sbt building
b8d5551 [zsxwing] Merge branch 'master' into flume-python
4762c34 [zsxwing] Fix the doc
0336579 [zsxwing] Refactor Flume unit tests and also add tests for Python API
9f33873 [zsxwing] Add the Python API for Flume
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Author: Shuo Xiang <shuoxiangpub@gmail.com>
Closes #6946 from coderxiang/en-java-code-example and squashes the following commits:
7a4bdf8 [Shuo Xiang] address comments
cddb02b [Shuo Xiang] add elastic net python example code
f4fa534 [Shuo Xiang] Merge remote-tracking branch 'upstream/master'
6ad4865 [Shuo Xiang] Merge remote-tracking branch 'upstream/master'
180b496 [Shuo Xiang] Merge remote-tracking branch 'upstream/master'
aa0717d [Shuo Xiang] Merge remote-tracking branch 'upstream/master'
5f109b4 [Shuo Xiang] Merge remote-tracking branch 'upstream/master'
c5c5bfe [Shuo Xiang] Merge remote-tracking branch 'upstream/master'
98804c9 [Shuo Xiang] fix bug in topBykey and update test
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A Python example similar to the existing one for Scala.
Author: Bryan Cutler <bjcutler@us.ibm.com>
Closes #6884 from BryanCutler/streaming-queueStream-example-8444 and squashes the following commits:
435ba7e [Bryan Cutler] [SPARK-8444] Fixed style checks, increased sleep time to show empty queue
257abb0 [Bryan Cutler] [SPARK-8444] Stop context gracefully, Removed unused import, Added description comment
376ef6e [Bryan Cutler] [SPARK-8444] Fixed bug causing DStream.pprint to append empty parenthesis to output instead of blank line
1ff5f8b [Bryan Cutler] [SPARK-8444] Adding Python streaming example for queue_stream
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All, this is a first attempt at refactoring `dev/run-tests` into Python. Initially I merely converted all Bash calls over to Python, then moved to a much more modular approach (more functions, moved the calls around, etc.). What is here is the initial culmination and should provide a great base to various downstream issues (e.g. SPARK-7016, modularize / parallelize testing, etc.). Would love comments / suggestions for this initial first step!
/cc srowen pwendell nchammas
Author: Brennon York <brennon.york@capitalone.com>
Closes #5694 from brennonyork/SPARK-7017 and squashes the following commits:
154ed73 [Brennon York] updated finding java binary if JAVA_HOME not set
3922a85 [Brennon York] removed necessary passed in variable
f9fbe54 [Brennon York] reverted doc test change
8135518 [Brennon York] removed the test check for documentation changes until jenkins can get updated
05d435b [Brennon York] added check for jekyll install
22edb78 [Brennon York] add check if jekyll isn't installed on the path
2dff136 [Brennon York] fixed pep8 whitespace errors
767a668 [Brennon York] fixed path joining issues, ensured docs actually build on doc changes
c42cf9a [Brennon York] unpack set operations with splat (*)
fb85a41 [Brennon York] fixed minor set bug
0379833 [Brennon York] minor doc addition to print the changed modules
aa03d9e [Brennon York] added documentation builds as a top level test component, altered high level project changes to properly execute core tests only when necessary, changed variable names for simplicity
ec1ae78 [Brennon York] minor name changes, bug fixes
b7c72b9 [Brennon York] reverting streaming context
03fdd7b [Brennon York] fixed the tuple () wraps around example lambda
705d12e [Brennon York] changed example to comply with pep3113 supporting python3
60b3d51 [Brennon York] prepend rather than append onto PATH
7d2f5e2 [Brennon York] updated python tests to remove unused variable
2898717 [Brennon York] added a change to streaming test to check if it only runs streaming tests
eb684b6 [Brennon York] fixed sbt_test_goals reference error
db7ae6f [Brennon York] reverted SPARK_HOME from start of command
1ecca26 [Brennon York] fixed merge conflicts
2fcdfc0 [Brennon York] testing targte branch dump on jenkins
1f607b1 [Brennon York] finalizing revisions to modular tests
8afbe93 [Brennon York] made error codes a global
0629de8 [Brennon York] updated to refactor and remove various small bugs, removed pep8 complaints
d90ab2d [Brennon York] fixed merge conflicts, ensured that for regular builds both core and sql tests always run
b1248dc [Brennon York] exec python rather than running python and exiting with return code
f9deba1 [Brennon York] python to python2 and removed newline
6d0a052 [Brennon York] incorporated merge conflicts with SPARK-7249
f950010 [Brennon York] removed building hive-0.12.0 per SPARK-6908
703f095 [Brennon York] fixed merge conflicts
b1ca593 [Brennon York] reverted the sparkR test
afeb093 [Brennon York] updated to make sparkR test fail
1dada6b [Brennon York] reverted pyspark test failure
9a592ec [Brennon York] reverted mima exclude issue, added pyspark test failure
d825aa4 [Brennon York] revert build break, add mima break
f041d8a [Brennon York] added space from commented import to now test build breaking
983f2a2 [Brennon York] comment out import to fail build test
2386785 [Brennon York] Merge remote-tracking branch 'upstream/master' into SPARK-7017
76335fb [Brennon York] reverted rat license issue for sparkconf
e4a96cc [Brennon York] removed the import error and added license error, fixed the way run-tests and run-tests.py report their error codes
56d3cb9 [Brennon York] changed test back and commented out import to break compile
b37328c [Brennon York] fixed typo and added default return is no error block was found in the environment
7613558 [Brennon York] updated to return the proper env variable for return codes
a5bd445 [Brennon York] reverted license, changed test in shuffle to fail
803143a [Brennon York] removed license file for SparkContext
b0b2604 [Brennon York] comment out import to see if build fails and returns properly
83e80ef [Brennon York] attempt at better python output when called from bash
c095fa6 [Brennon York] removed another wait() call
26e18e8 [Brennon York] removed unnecessary wait()
07210a9 [Brennon York] minor doc string change for java version with namedtuple update
ec03bf3 [Brennon York] added namedtuple for java version to add readability
2cb413b [Brennon York] upcased global variables, changes various calling methods from check_output to check_call
639f1e9 [Brennon York] updated with pep8 rules, fixed minor bugs, added run-tests file in bash to call the run-tests.py script
3c53a1a [Brennon York] uncomment the scala tests :)
6126c4f [Brennon York] refactored run-tests into python
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Resolves [SPARK-7743](https://issues.apache.org/jira/browse/SPARK-7743).
Trivial changes of versions, package names, as well as a small issue in `ParquetTableOperations.scala`
```diff
- val readContext = getReadSupport(configuration).init(
+ val readContext = ParquetInputFormat.getReadSupportInstance(configuration).init(
```
Since ParquetInputFormat.getReadSupport was made package private in the latest release.
Thanks
-- Thomas Omans
Author: Thomas Omans <tomans@cj.com>
Closes #6597 from eggsby/SPARK-7743 and squashes the following commits:
2df0d1b [Thomas Omans] [SPARK-7743] [SQL] Upgrading parquet version to 1.7.0
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Author: Ram Sriharsha <rsriharsha@hw11853.local>
Closes #6358 from harsha2010/SPARK-7387 and squashes the following commits:
63efda2 [Ram Sriharsha] more examples for classifier to distinguish mapreduce from spark properly
aeb6bb6 [Ram Sriharsha] Python Style Fix
54a500c [Ram Sriharsha] Merge branch 'master' into SPARK-7387
615e91c [Ram Sriharsha] cleanup
204c4e3 [Ram Sriharsha] Merge branch 'master' into SPARK-7387
7246d35 [Ram Sriharsha] [SPARK-7387][ml][doc] CrossValidator example code in Python
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Author: Ram Sriharsha <rsriharsha@hw11853.local>
Closes #6443 from harsha2010/SPARK-6013 and squashes the following commits:
732506e [Ram Sriharsha] Code Review Feedback
121c211 [Ram Sriharsha] python style fix
5f9b8c3 [Ram Sriharsha] python style fixes
925ca86 [Ram Sriharsha] Simple Params Example
8b372b1 [Ram Sriharsha] GBT Example
965ec14 [Ram Sriharsha] Random Forest Example
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Hi,
Following the discussion in http://apache-spark-developers-list.1001551.n3.nabble.com/python-converter-in-HBaseConverter-scala-spark-examples-td10001.html. I made some modification in three files in package examples:
1. HBaseConverters.scala: the new converter will converts all the records in an hbase results into a single string
2. hbase_input.py: as the value string may contain several records, we can use ast package to convert the string into dict
3. HBaseTest.scala: as the package examples use hbase 0.98.7 the original constructor HTableDescriptor is deprecated. The updation to new constructor is made
Author: GenTang <gen.tang86@gmail.com>
Closes #3920 from GenTang/master and squashes the following commits:
d2153df [GenTang] import JSONObject precisely
4802481 [GenTang] dump the result into a singl String
62df7f0 [GenTang] remove the comment
21de653 [GenTang] return the string in json format
15b1fe3 [GenTang] the modification of comments
5cbbcfc [GenTang] the improvement of pythonconverter
ceb31c5 [GenTang] the modification for adapting updation of hbase
3253b61 [GenTang] the modification accompanying the improvement of pythonconverter
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The difference is because we previously don't fit the intercept in Spark 1.3. Here, we change the input `String` so that the probability of instance 6 can be classified as `1.0` without any ambiguity.
with lambda = 0.001 in current LOR implementation, the prediction is
```
(4, spark i j k) --> prob=[0.1596407738787411,0.8403592261212589], prediction=1.0
(5, l m n) --> prob=[0.8378325685476612,0.16216743145233883], prediction=0.0
(6, spark hadoop spark) --> prob=[0.0692663313297627,0.9307336686702373], prediction=1.0
(7, apache hadoop) --> prob=[0.9821575333444208,0.01784246665557917], prediction=0.0
```
and the training accuracy is
```
(0, a b c d e spark) --> prob=[0.0021342419881406746,0.9978657580118594], prediction=1.0
(1, b d) --> prob=[0.9959176174854043,0.004082382514595685], prediction=0.0
(2, spark f g h) --> prob=[0.0014541569986711233,0.9985458430013289], prediction=1.0
(3, hadoop mapreduce) --> prob=[0.9982978367343561,0.0017021632656438518], prediction=0.0
```
Author: DB Tsai <dbt@netflix.com>
Closes #6109 from dbtsai/lor-example and squashes the following commits:
ac63ce4 [DB Tsai] first commit
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The following items are added to Python kmeans:
kmeans - setEpsilon, setInitializationSteps
KMeansModel - computeCost, k
Author: Hrishikesh Subramonian <hrishikesh.subramonian@flytxt.com>
Closes #5647 from FlytxtRnD/newPyKmeansAPI and squashes the following commits:
b9e451b [Hrishikesh Subramonian] set seed to fixed value in doc test
5fd3ced [Hrishikesh Subramonian] doc test corrections
20b3c68 [Hrishikesh Subramonian] python 3 fixes
4d4e695 [Hrishikesh Subramonian] added arguments in python tests
21eb84c [Hrishikesh Subramonian] Python Kmeans - setEpsilon, setInitializationSteps, k and computeCost added.
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kmeans.py to simplify readability
With the previous syntax it could look like that the reduceByKey sums separately abscissas and ordinates of some 2D points. Perhaps in this way should be easier to understand the example, especially for who is starting the functional programming like me now.
Author: Niccolo Becchi <niccolo.becchi@gmail.com>
Author: pippobaudos <niccolo.becchi@gmail.com>
Closes #5875 from pippobaudos/patch-1 and squashes the following commits:
3bb3a47 [pippobaudos] renamed variables in LocalKMeans.scala and kmeans.py to simplify readability
2c2a7a2 [Niccolo Becchi] Update SparkKMeans.scala
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Currently only added `createDirectStream` API, I'm not sure if `createRDD` is also needed, since some Java object needs to be wrapped in Python. Please help to review, thanks a lot.
Author: jerryshao <saisai.shao@intel.com>
Author: Saisai Shao <saisai.shao@intel.com>
Closes #4723 from jerryshao/direct-kafka-python-api and squashes the following commits:
a1fe97c [jerryshao] Fix rebase issue
eebf333 [jerryshao] Address the comments
da40f4e [jerryshao] Fix Python 2.6 Syntax error issue
5c0ee85 [jerryshao] Style fix
4aeac18 [jerryshao] Fix bug in example code
7146d86 [jerryshao] Add unit test
bf3bdd6 [jerryshao] Add more APIs and address the comments
f5b3801 [jerryshao] Small style fix
8641835 [Saisai Shao] Rebase and update the code
589c05b [Saisai Shao] Fix the style
d6fcb6a [Saisai Shao] Address the comments
dfda902 [Saisai Shao] Style fix
0f7d168 [Saisai Shao] Add the doc and fix some style issues
67e6880 [Saisai Shao] Fix test bug
917b0db [Saisai Shao] Add Python createRDD API for Kakfa direct stream
c3fc11d [jerryshao] Modify the docs
2c00936 [Saisai Shao] address the comments
3360f44 [jerryshao] Fix code style
e0e0f0d [jerryshao] Code clean and bug fix
338c41f [Saisai Shao] Add python API and example for direct kafka stream
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....py
Author: tedyu <yuzhihong@gmail.com>
Closes #5673 from tedyu/master and squashes the following commits:
ab7c72b [tedyu] SPARK-7107 Adjust indentation to pass Python style tests
6e25939 [tedyu] Adjust line length to be shorter than 100 characters
18d172a [tedyu] SPARK-7107 Add parameter for zookeeper.znode.parent to hbase_inputformat.py
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To run Spark, default will read file from HDFS if we don't set the schema.
Author: linweizhong <linweizhong@huawei.com>
Closes #5684 from Sephiroth-Lin/pyspark_example_minor and squashes the following commits:
19fe145 [linweizhong] Update example sql.py, so that can read file correctly
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This PR update PySpark to support Python 3 (tested with 3.4).
Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped.
TODO: ec2/spark-ec2.py is not fully tested with python3.
Author: Davies Liu <davies@databricks.com>
Author: twneale <twneale@gmail.com>
Author: Josh Rosen <joshrosen@databricks.com>
Closes #5173 from davies/python3 and squashes the following commits:
d7d6323 [Davies Liu] fix tests
6c52a98 [Davies Liu] fix mllib test
99e334f [Davies Liu] update timeout
b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
cafd5ec [Davies Liu] adddress comments from @mengxr
bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
179fc8d [Davies Liu] tuning flaky tests
8c8b957 [Davies Liu] fix ResourceWarning in Python 3
5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
4006829 [Davies Liu] fix test
2fc0066 [Davies Liu] add python3 path
71535e9 [Davies Liu] fix xrange and divide
5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ed498c8 [Davies Liu] fix compatibility with python 3
820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ad7c374 [Davies Liu] fix mllib test and warning
ef1fc2f [Davies Liu] fix tests
4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
59bb492 [Davies Liu] fix tests
1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ca0fdd3 [Davies Liu] fix code style
9563a15 [Davies Liu] add imap back for python 2
0b1ec04 [Davies Liu] make python examples work with Python 3
d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
a716d34 [Davies Liu] test with python 3.4
f1700e8 [Davies Liu] fix test in python3
671b1db [Davies Liu] fix test in python3
692ff47 [Davies Liu] fix flaky test
7b9699f [Davies Liu] invalidate import cache for Python 3.3+
9c58497 [Davies Liu] fix kill worker
309bfbf [Davies Liu] keep compatibility
5707476 [Davies Liu] cleanup, fix hash of string in 3.3+
8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
f53e1f0 [Davies Liu] fix tests
70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3
a39167e [Davies Liu] support customize class in __main__
814c77b [Davies Liu] run unittests with python 3
7f4476e [Davies Liu] mllib tests passed
d737924 [Davies Liu] pass ml tests
375ea17 [Davies Liu] SQL tests pass
6cc42a9 [Davies Liu] rename
431a8de [Davies Liu] streaming tests pass
78901a7 [Davies Liu] fix hash of serializer in Python 3
24b2f2e [Davies Liu] pass all RDD tests
35f48fe [Davies Liu] run future again
1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py
6e3c21d [Davies Liu] make cloudpickle work with Python3
2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run
1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out
7354371 [twneale] buffer --> memoryview I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work.
b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?).
f40d925 [twneale] xrange --> range
e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206
79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper
2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3
854be27 [Josh Rosen] Run `futurize` on Python code:
7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
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Use `sqlContext` in PySpark shell, make it consistent with SQL programming guide. `sqlCtx` is also kept for compatibility.
Author: Davies Liu <davies@databricks.com>
Closes #5425 from davies/sqlCtx and squashes the following commits:
af67340 [Davies Liu] sqlCtx -> sqlContext
15a278f [Davies Liu] use sqlContext in python shell
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Fix the import in sql example.
Author: Davies Liu <davies@databricks.com>
Closes #5230 from davies/fix_sql_example and squashes the following commits:
7ecc5f4 [Davies Liu] fix sql example
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Added Scala, Java and Python streaming examples showing DataFrame and SQL operations within streaming.
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes #4975 from tdas/streaming-sql-examples and squashes the following commits:
705cba1 [Tathagata Das] Fixed python lint error
75a3fad [Tathagata Das] Fixed python lint error
5fbf789 [Tathagata Das] Removed empty lines at the end
874b943 [Tathagata Das] Added examples streaming + sql examples.
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Usage info in documentation does not match actual usage info.
Doc string usage says ```Usage: network_wordcount.py <zk> <topic>``` whereas the actual usage is ```Usage: kafka_wordcount.py <zk> <topic>```
Author: Kenneth Myers <myerske@us.ibm.com>
Closes #4852 from kennethmyers/kafka_wordcount_documentation_fix and squashes the following commits:
3855325 [Kenneth Myers] Fixed usage string in documentation.
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Small changes, please help to review, thanks a lot.
Author: Saisai Shao <saisai.shao@intel.com>
Closes #4837 from jerryshao/doc-fix and squashes the following commits:
545291a [Saisai Shao] Fix some error docs in streaming examples
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For SPARK-5867:
* The spark.ml programming guide needs to be updated to use the new SQL DataFrame API instead of the old SchemaRDD API.
* It should also include Python examples now.
For SPARK-5892:
* Fix Python docs
* Various other cleanups
BTW, I accidentally merged this with master. If you want to compile it on your own, use this branch which is based on spark/branch-1.3 and cherry-picks the commits from this PR: [https://github.com/jkbradley/spark/tree/doc-review-1.3-check]
CC: mengxr (ML), davies (Python docs)
Author: Joseph K. Bradley <joseph@databricks.com>
Closes #4675 from jkbradley/doc-review-1.3 and squashes the following commits:
f191bb0 [Joseph K. Bradley] small cleanups
e786efa [Joseph K. Bradley] small doc corrections
6b1ab4a [Joseph K. Bradley] fixed python lint test
946affa [Joseph K. Bradley] Added sample data for ml.MovieLensALS example. Changed spark.ml Java examples to use DataFrames API instead of sql()
da81558 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into doc-review-1.3
629dbf5 [Joseph K. Bradley] Updated based on code review: * made new page for old migration guides * small fixes * moved inherit_doc in python
b9df7c4 [Joseph K. Bradley] Small cleanups: toDF to toDF(), adding s for string interpolation
34b067f [Joseph K. Bradley] small doc correction
da16aef [Joseph K. Bradley] Fixed python mllib docs
8cce91c [Joseph K. Bradley] GMM: removed old imports, added some doc
695f3f6 [Joseph K. Bradley] partly done trying to fix inherit_doc for class hierarchies in python docs
a72c018 [Joseph K. Bradley] made ChiSqTestResult appear in python docs
b05a80d [Joseph K. Bradley] organize imports. doc cleanups
e572827 [Joseph K. Bradley] updated programming guide for ml and mllib
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This patch bring the pull based progress API into Python, also a example in Python.
Author: Davies Liu <davies@databricks.com>
Closes #3027 from davies/progress_api and squashes the following commits:
b1ba984 [Davies Liu] fix style
d3b9253 [Davies Liu] add tests, mute the exception after stop
4297327 [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress_api
969fa9d [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress_api
25590c9 [Davies Liu] update with Java API
360de2d [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress_api
c0f1021 [Davies Liu] Merge branch 'master' of github.com:apache/spark into progress_api
023afb3 [Davies Liu] add Python API and example for progress API
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This PR allow Python users to set params in constructors and in setParams, where we use decorator `keyword_only` to force keyword arguments. The trade-off is discussed in the design doc of SPARK-4586.
Generated doc:
![screen shot 2015-02-12 at 3 06 58 am](https://cloud.githubusercontent.com/assets/829644/6166491/9cfcd06a-b265-11e4-99ea-473d866634fc.png)
CC: davies rxin
Author: Xiangrui Meng <meng@databricks.com>
Closes #4564 from mengxr/py-pipeline-kw and squashes the following commits:
fedf720 [Xiangrui Meng] use toDF
d565f2c [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into py-pipeline-kw
cbc15d3 [Xiangrui Meng] fix style
5032097 [Xiangrui Meng] update pipeline signature
950774e [Xiangrui Meng] simplify keyword_only and update constructor/setParams signatures
fdde5fc [Xiangrui Meng] fix style
c9384b8 [Xiangrui Meng] fix sphinx doc
8e59180 [Xiangrui Meng] add setParams and make constructors take params, where we force keyword args
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Deprecate inferSchema() and applySchema(), use createDataFrame() instead, which could take an optional `schema` to create an DataFrame from an RDD. The `schema` could be StructType or list of names of columns.
Author: Davies Liu <davies@databricks.com>
Closes #4498 from davies/create and squashes the following commits:
08469c1 [Davies Liu] remove Scala/Java API for now
c80a7a9 [Davies Liu] fix hive test
d1bd8f2 [Davies Liu] cleanup applySchema
9526e97 [Davies Liu] createDataFrame from RDD with columns
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Python API for the Gaussian Mixture Model clustering algorithm in MLLib.
Author: FlytxtRnD <meethu.mathew@flytxt.com>
Closes #4059 from FlytxtRnD/PythonGmmWrapper and squashes the following commits:
c973ab3 [FlytxtRnD] Merge branch 'PythonGmmWrapper', remote-tracking branch 'upstream/master' into PythonGmmWrapper
339b09c [FlytxtRnD] Added MultivariateGaussian namedtuple and Arraybuffer in trainGaussianMixture
fa0a142 [FlytxtRnD] New line added
d5b36ab [FlytxtRnD] Changed argument names to lowercase
ac134f1 [FlytxtRnD] Merge branch 'PythonGmmWrapper' of https://github.com/FlytxtRnD/spark into PythonGmmWrapper
6671ea1 [FlytxtRnD] Added mllib/stat/distribution.py
3aee84b [FlytxtRnD] Fixed style issues
2e9f12a [FlytxtRnD] Added mllib/stat/distribution.py and fixed style issues
b22532c [FlytxtRnD] Merge branch 'PythonGmmWrapper', remote-tracking branch 'upstream/master' into PythonGmmWrapper
2e14d82 [FlytxtRnD] Incorporate MultivariateGaussian instances in GaussianMixtureModel
05767c7 [FlytxtRnD] Merge branch 'PythonGmmWrapper', remote-tracking branch 'upstream/master' into PythonGmmWrapper
3464d19 [FlytxtRnD] Merge branch 'PythonGmmWrapper', remote-tracking branch 'upstream/master' into PythonGmmWrapper
c1d4c71 [FlytxtRnD] Merge branch 'PythonGmmWrapper', remote-tracking branch 'origin/PythonGmmWrapper' into PythonGmmWrapper
426d130 [FlytxtRnD] Added random seed parameter
332bad1 [FlytxtRnD] Merge branch 'PythonGmmWrapper', remote-tracking branch 'upstream/master' into PythonGmmWrapper
f82750b [FlytxtRnD] Fixed style issues
5c83825 [FlytxtRnD] Split input file with space delimiter
fda60f3 [FlytxtRnD] Python API for Gaussian Mixture Model
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This PR brings the Python API for Spark Streaming Kafka data source.
```
class KafkaUtils(__builtin__.object)
| Static methods defined here:
|
| createStream(ssc, zkQuorum, groupId, topics, storageLevel=StorageLevel(True, True, False, False,
2), keyDecoder=<function utf8_decoder>, valueDecoder=<function utf8_decoder>)
| Create an input stream that pulls messages from a Kafka Broker.
|
| :param ssc: StreamingContext object
| :param zkQuorum: Zookeeper quorum (hostname:port,hostname:port,..).
| :param groupId: The group id for this consumer.
| :param topics: Dict of (topic_name -> numPartitions) to consume.
| Each partition is consumed in its own thread.
| :param storageLevel: RDD storage level.
| :param keyDecoder: A function used to decode key
| :param valueDecoder: A function used to decode value
| :return: A DStream object
```
run the example:
```
bin/spark-submit --driver-class-path external/kafka-assembly/target/scala-*/spark-streaming-kafka-assembly-*.jar examples/src/main/python/streaming/kafka_wordcount.py localhost:2181 test
```
Author: Davies Liu <davies@databricks.com>
Author: Tathagata Das <tdas@databricks.com>
Closes #3715 from davies/kafka and squashes the following commits:
d93bfe0 [Davies Liu] Update make-distribution.sh
4280d04 [Davies Liu] address comments
e6d0427 [Davies Liu] Merge branch 'master' of github.com:apache/spark into kafka
f257071 [Davies Liu] add tests for null in RDD
23b039a [Davies Liu] address comments
9af51c4 [Davies Liu] Merge branch 'kafka' of github.com:davies/spark into kafka
a74da87 [Davies Liu] address comments
dc1eed0 [Davies Liu] Update kafka_wordcount.py
31e2317 [Davies Liu] Update kafka_wordcount.py
370ba61 [Davies Liu] Update kafka.py
97386b3 [Davies Liu] address comment
2c567a5 [Davies Liu] update logging and comment
33730d1 [Davies Liu] Merge branch 'master' of github.com:apache/spark into kafka
adeeb38 [Davies Liu] Merge pull request #3 from tdas/kafka-python-api
aea8953 [Tathagata Das] Kafka-assembly for Python API
eea16a7 [Davies Liu] refactor
f6ce899 [Davies Liu] add example and fix bugs
98c8d17 [Davies Liu] fix python style
5697a01 [Davies Liu] bypass decoder in scala
048dbe6 [Davies Liu] fix python style
75d485e [Davies Liu] add mqtt
07923c4 [Davies Liu] support kafka in Python
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This PR is implementing the Gradient Boosted Trees for Python API.
Author: Kazuki Taniguchi <kazuki.t.1018@gmail.com>
Closes #3951 from kazk1018/gbt_for_py and squashes the following commits:
620d247 [Kazuki Taniguchi] [SPARK-5094][MLlib] Add Python API for Gradient Boosted Trees
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This PR adds Python API for ML pipeline and parameters. The design doc can be found on the JIRA page. It includes transformers and an estimator to demo the simple text classification example code.
TODO:
- [x] handle parameters in LRModel
- [x] unit tests
- [x] missing some docs
CC: davies jkbradley
Author: Xiangrui Meng <meng@databricks.com>
Author: Davies Liu <davies@databricks.com>
Closes #4151 from mengxr/SPARK-4586 and squashes the following commits:
415268e [Xiangrui Meng] remove inherit_doc from __init__
edbd6fe [Xiangrui Meng] move Identifiable to ml.util
44c2405 [Xiangrui Meng] Merge pull request #2 from davies/ml
dd1256b [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into SPARK-4586
14ae7e2 [Davies Liu] fix docs
54ca7df [Davies Liu] fix tests
78638df [Davies Liu] Merge branch 'SPARK-4586' of github.com:mengxr/spark into ml
fc59a02 [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into SPARK-4586
1dca16a [Davies Liu] refactor
090b3a3 [Davies Liu] Merge branch 'master' of github.com:apache/spark into ml
0882513 [Xiangrui Meng] update doc style
a4f4dbf [Xiangrui Meng] add unit test for LR
7521d1c [Xiangrui Meng] add unit tests to HashingTF and Tokenizer
ba0ba1e [Xiangrui Meng] add unit tests for pipeline
0586c7b [Xiangrui Meng] add more comments to the example
5153cff [Xiangrui Meng] simplify java models
036ca04 [Xiangrui Meng] gen numFeatures
46fa147 [Xiangrui Meng] update mllib/pom.xml to include python files in the assembly
1dcc17e [Xiangrui Meng] update code gen and make param appear in the doc
f66ba0c [Xiangrui Meng] make params a property
d5efd34 [Xiangrui Meng] update doc conf and move embedded param map to instance attribute
f4d0fe6 [Xiangrui Meng] use LabeledDocument and Document in example
05e3e40 [Xiangrui Meng] update example
d3e8dbe [Xiangrui Meng] more docs optimize pipeline.fit impl
56de571 [Xiangrui Meng] fix style
d0c5bb8 [Xiangrui Meng] a working copy
bce72f4 [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into SPARK-4586
17ecfb9 [Xiangrui Meng] code gen for shared params
d9ea77c [Xiangrui Meng] update doc
c18dca1 [Xiangrui Meng] make the example working
dadd84e [Xiangrui Meng] add base classes and docs
a3015cf [Xiangrui Meng] add Estimator and Transformer
46eea43 [Xiangrui Meng] a pipeline in python
33b68e0 [Xiangrui Meng] a working LR
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This pull request redesigns the existing Spark SQL dsl, which already provides data frame like functionalities.
TODOs:
With the exception of Python support, other tasks can be done in separate, follow-up PRs.
- [ ] Audit of the API
- [ ] Documentation
- [ ] More test cases to cover the new API
- [x] Python support
- [ ] Type alias SchemaRDD
Author: Reynold Xin <rxin@databricks.com>
Author: Davies Liu <davies@databricks.com>
Closes #4173 from rxin/df1 and squashes the following commits:
0a1a73b [Reynold Xin] Merge branch 'df1' of github.com:rxin/spark into df1
23b4427 [Reynold Xin] Mima.
828f70d [Reynold Xin] Merge pull request #7 from davies/df
257b9e6 [Davies Liu] add repartition
6bf2b73 [Davies Liu] fix collect with UDT and tests
e971078 [Reynold Xin] Missing quotes.
b9306b4 [Reynold Xin] Remove removeColumn/updateColumn for now.
a728bf2 [Reynold Xin] Example rename.
e8aa3d3 [Reynold Xin] groupby -> groupBy.
9662c9e [Davies Liu] improve DataFrame Python API
4ae51ea [Davies Liu] python API for dataframe
1e5e454 [Reynold Xin] Fixed a bug with symbol conversion.
2ca74db [Reynold Xin] Couple minor fixes.
ea98ea1 [Reynold Xin] Documentation & literal expressions.
2b22684 [Reynold Xin] Got rid of IntelliJ problems.
02bbfbc [Reynold Xin] Tightening imports.
ffbce66 [Reynold Xin] Fixed compilation error.
59b6d8b [Reynold Xin] Style violation.
b85edfb [Reynold Xin] ALS.
8c37f0a [Reynold Xin] Made MLlib and examples compile
6d53134 [Reynold Xin] Hive module.
d35efd5 [Reynold Xin] Fixed compilation error.
ce4a5d2 [Reynold Xin] Fixed test cases in SQL except ParquetIOSuite.
66d5ef1 [Reynold Xin] SQLContext minor patch.
c9bcdc0 [Reynold Xin] Checkpoint: SQL module compiles!
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DecisionTree API fix
Major changes:
* Added programming guide sections for tree ensembles
* Added examples for tree ensembles
* Updated DecisionTree programming guide with more info on parameters
* **API change**: Standardized the tree parameter for the number of classes (for classification)
Minor changes:
* Updated decision tree documentation
* Updated existing tree and tree ensemble examples
* Use train/test split, and compute test error instead of training error.
* Fixed decision_tree_runner.py to actually use the number of classes it computes from data. (small bug fix)
Note: I know this is a lot of lines, but most is covered by:
* Programming guide sections for gradient boosting and random forests. (The changes are probably best viewed by generating the docs locally.)
* New examples (which were copied from the programming guide)
* The "numClasses" renaming
I have run all examples and relevant unit tests.
CC: mengxr manishamde codedeft
Author: Joseph K. Bradley <joseph@databricks.com>
Author: Joseph K. Bradley <joseph.kurata.bradley@gmail.com>
Closes #3461 from jkbradley/ensemble-docs and squashes the following commits:
70a75f3 [Joseph K. Bradley] updated forest vs boosting comparison
d1de753 [Joseph K. Bradley] Added note about toString and toDebugString for DecisionTree to migration guide
8e87f8f [Joseph K. Bradley] Combined GBT and RandomForest guides into one ensembles guide
6fab846 [Joseph K. Bradley] small fixes based on review
b9f8576 [Joseph K. Bradley] updated decision tree doc
375204c [Joseph K. Bradley] fixed python style
2b60b6e [Joseph K. Bradley] merged Java RandomForest examples into 1 file. added header. Fixed small bug in same example in the programming guide.
706d332 [Joseph K. Bradley] updated python DT runner to print full model if it is small
c76c823 [Joseph K. Bradley] added migration guide for mllib
abe5ed7 [Joseph K. Bradley] added examples for random forest in Java and Python to examples folder
07fc11d [Joseph K. Bradley] Renamed numClassesForClassification to numClasses everywhere in trees and ensembles. This is a breaking API change, but it was necessary to correct an API inconsistency in Spark 1.1 (where Python DecisionTree used numClasses but Scala used numClassesForClassification).
cdfdfbc [Joseph K. Bradley] added examples for GBT
6372a2b [Joseph K. Bradley] updated decision tree examples to use random split. tested all of them.
ad3e695 [Joseph K. Bradley] added gbt and random forest to programming guide. still need to update their examples
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Based on SPARK-2434, this PR generates runtime warnings for example implementations (Python, Scala) of PageRank.
Author: Varadharajan Mukundan <srinathsmn@gmail.com>
Closes #2894 from varadharajan/SPARK-4047 and squashes the following commits:
5f9406b [Varadharajan Mukundan] [SPARK-4047] - Point users to LogisticRegressionWithSGD and LogisticRegressionWithLBFGS instead of LogisticRegressionModel
252f595 [Varadharajan Mukundan] a. Generate runtime warnings for
05a018b [Varadharajan Mukundan] Fix PageRank implementation's package reference
5c2bf54 [Varadharajan Mukundan] [SPARK-4047] - Generate runtime warnings for example implementation of PageRank
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Register MLlib's Vector as a SQL user-defined type (UDT) in both Scala and Python. With this PR, we can easily map a RDD[LabeledPoint] to a SchemaRDD, and then select columns or save to a Parquet file. Examples in Scala/Python are attached. The Scala code was copied from jkbradley.
~~This PR contains the changes from #3068 . I will rebase after #3068 is merged.~~
marmbrus jkbradley
Author: Xiangrui Meng <meng@databricks.com>
Closes #3070 from mengxr/SPARK-3573 and squashes the following commits:
3a0b6e5 [Xiangrui Meng] organize imports
236f0a0 [Xiangrui Meng] register vector as UDT and provide dataset examples
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This pull request refers to issue: https://issues.apache.org/jira/browse/SPARK-3838
Python example for word2vec
mengxr
Author: Anant <anant.asty@gmail.com>
Closes #2952 from anantasty/SPARK-3838 and squashes the following commits:
87bd723 [Anant] remove stop line
4bd439e [Anant] Changes as per code review. Fized error in word2vec python example, simplified example in docs.
3d3c9ee [Anant] Added empty line after python imports
0c90c31 [Anant] Fixed erroneous code. I was still treating each line to be a single word instead of 16 words
ee4f5f6 [Anant] Fixes from code review comments
c637bcf [Anant] Added word2vec python example to docs
269f31f [Anant] added example in docs
c015b14 [Anant] Added python example for word2vec
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Author: anant asthana <anant.asty@gmail.com>
Closes #2948 from anantasty/patch-1 and squashes the following commits:
d8fea0b [anant asthana] Just fixing comment that shows usage
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Programming Guide
Having Python examples in Streaming Programming Guide.
Also add RecoverableNetworkWordCount example.
Author: Davies Liu <davies.liu@gmail.com>
Author: Davies Liu <davies@databricks.com>
Closes #2808 from davies/pyguide and squashes the following commits:
8d4bec4 [Davies Liu] update readme
26a7e37 [Davies Liu] fix format
3821c4d [Davies Liu] address comments, add missing file
7e4bb8a [Davies Liu] add Python examples in Streaming Programming Guide
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Author: Daoyuan Wang <daoyuan.wang@intel.com>
Closes #2834 from adrian-wang/sqlpypath and squashes the following commits:
da7aa95 [Daoyuan Wang] fix file path using path.join
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This patch brings Python API for Streaming.
This patch is based on work from @giwa
Author: giwa <ugw.gi.world@gmail.com>
Author: Ken Takagiwa <ken@Kens-MacBook-Pro.local>
Author: Davies Liu <davies.liu@gmail.com>
Author: Ken Takagiwa <ken@kens-mbp.gateway.sonic.net>
Author: Tathagata Das <tathagata.das1565@gmail.com>
Author: Ken <ugw.gi.world@gmail.com>
Author: Ken Takagiwa <ugw.gi.world@gmail.com>
Author: Matthew Farrellee <matt@redhat.com>
Closes #2538 from davies/streaming and squashes the following commits:
64561e4 [Davies Liu] fix tests
331ecce [Davies Liu] fix example
3e2492b [Davies Liu] change updateStateByKey() to easy API
182be73 [Davies Liu] Merge branch 'master' of github.com:apache/spark into streaming
02d0575 [Davies Liu] add wrapper for foreachRDD()
bebeb4a [Davies Liu] address all comments
6db00da [Davies Liu] Merge branch 'master' of github.com:apache/spark into streaming
8380064 [Davies Liu] Merge branch 'master' of github.com:apache/spark into streaming
52c535b [Davies Liu] remove fix for sum()
e108ec1 [Davies Liu] address comments
37fe06f [Davies Liu] use random port for callback server
d05871e [Davies Liu] remove reuse of PythonRDD
be5e5ff [Davies Liu] merge branch of env, make tests stable.
8071541 [Davies Liu] Merge branch 'env' into streaming
c7bbbce [Davies Liu] fix sphinx docs
6bb9d91 [Davies Liu] Merge branch 'master' of github.com:apache/spark into streaming
4d0ea8b [Davies Liu] clear reference of SparkEnv after stop
54bd92b [Davies Liu] improve tests
c2b31cb [Davies Liu] Merge branch 'master' of github.com:apache/spark into streaming
7a88f9f [Davies Liu] rollback RDD.setContext(), use textFileStream() to test checkpointing
bd8a4c2 [Davies Liu] fix scala style
7797c70 [Davies Liu] refactor
ff88bec [Davies Liu] rename RDDFunction to TransformFunction
d328aca [Davies Liu] fix serializer in queueStream
6f0da2f [Davies Liu] recover from checkpoint
fa7261b [Davies Liu] refactor
a13ff34 [Davies Liu] address comments
8466916 [Davies Liu] support checkpoint
9a16bd1 [Davies Liu] change number of partitions during tests
b98d63f [Davies Liu] change private[spark] to private[python]
eed6e2a [Davies Liu] rollback not needed changes
e00136b [Davies Liu] address comments
069a94c [Davies Liu] fix the number of partitions during window()
338580a [Davies Liu] change _first(), _take(), _collect() as private API
19797f9 [Davies Liu] clean up
6ebceca [Davies Liu] add more tests
c40c52d [Davies Liu] change first(), take(n) to has the same behavior as RDD
98ac6c2 [Davies Liu] support ssc.transform()
b983f0f [Davies Liu] address comments
847f9b9 [Davies Liu] add more docs, add first(), take()
e059ca2 [Davies Liu] move check of window into Python
fce0ef5 [Davies Liu] rafactor of foreachRDD()
7001b51 [Davies Liu] refactor of queueStream()
26ea396 [Davies Liu] refactor
74df565 [Davies Liu] fix print and docs
b32774c [Davies Liu] move java_import into streaming
604323f [Davies Liu] enable streaming tests
c499ba0 [Davies Liu] remove Time and Duration
3f0fb4b [Davies Liu] refactor fix tests
c28f520 [Davies Liu] support updateStateByKey
d357b70 [Davies Liu] support windowed dstream
bd13026 [Davies Liu] fix examples
eec401e [Davies Liu] refactor, combine TransformedRDD, fix reuse PythonRDD, fix union
9a57685 [Davies Liu] fix python style
bd27874 [Davies Liu] fix scala style
7339be0 [Davies Liu] delete tests
7f53086 [Davies Liu] support transform(), refactor and cleanup
df098fc [Davies Liu] Merge branch 'master' into giwa
550dfd9 [giwa] WIP fixing 1.1 merge
5cdb6fa [giwa] changed for SCCallSiteSync
e685853 [giwa] meged with rebased 1.1 branch
2d32a74 [giwa] added some StreamingContextTestSuite
4a59e1e [giwa] WIP:added more test for StreamingContext
8ffdbf1 [giwa] added atexit to handle callback server
d5f5fcb [giwa] added comment for StreamingContext.sparkContext
63c881a [giwa] added StreamingContext.sparkContext
d39f102 [giwa] added StreamingContext.remember
d542743 [giwa] clean up code
2fdf0de [Matthew Farrellee] Fix scalastyle errors
c0a06bc [giwa] delete not implemented functions
f385976 [giwa] delete inproper comments
b0f2015 [giwa] added comment in dstream._test_output
bebb3f3 [giwa] remove the last brank line
fbed8da [giwa] revert pom.xml
8ed93af [giwa] fixed explanaiton
066ba90 [giwa] revert pom.xml
fa4af88 [giwa] remove duplicated import
6ae3caa [giwa] revert pom.xml
7dc7391 [giwa] fixed typo
62dc7a3 [giwa] clean up exmples
f04882c [giwa] clen up examples
b171ec3 [giwa] fixed pep8 violation
f198d14 [giwa] clean up code
3166d31 [giwa] clean up
c00e091 [giwa] change test case not to use awaitTermination
e80647e [giwa] adopted the latest compression way of python command
58e41ff [giwa] merge with master
455e5af [giwa] removed wasted print in DStream
af336b7 [giwa] add comments
ddd4ee1 [giwa] added TODO coments
99ce042 [giwa] added saveAsTextFiles and saveAsPickledFiles
2a06cdb [giwa] remove waste duplicated code
c5ecfc1 [giwa] basic function test cases are passed
8dcda84 [giwa] all tests are passed if numSlice is 2 and the numver of each input is over 4
795b2cd [giwa] broke something
1e126bf [giwa] WIP: solved partitioned and None is not recognized
f67cf57 [giwa] added mapValues and flatMapVaules WIP for glom and mapPartitions test
953deb0 [giwa] edited the comment to add more precise description
af610d3 [giwa] removed unnesessary changes
c1d546e [giwa] fixed PEP-008 violation
99410be [giwa] delete waste file
b3b0362 [giwa] added basic operation test cases
9cde7c9 [giwa] WIP added test case
bd3ba53 [giwa] WIP
5c04a5f [giwa] WIP: added PythonTestInputStream
019ef38 [giwa] WIP
1934726 [giwa] update comment
376e3ac [giwa] WIP
932372a [giwa] clean up dstream.py
0b09cff [giwa] added stop in StreamingContext
92e333e [giwa] implemented reduce and count function in Dstream
1b83354 [giwa] Removed the waste line
88f7506 [Ken Takagiwa] Kill py4j callback server properly
54b5358 [Ken Takagiwa] tried to restart callback server
4f07163 [Tathagata Das] Implemented DStream.foreachRDD in the Python API using Py4J callback server.
fe02547 [Ken Takagiwa] remove waste file
2ad7bd3 [Ken Takagiwa] clean up codes
6197a11 [Ken Takagiwa] clean up code
eb4bf48 [Ken Takagiwa] fix map function
98c2a00 [Ken Takagiwa] added count operation but this implementation need double check
58591d2 [Ken Takagiwa] reduceByKey is working
0df7111 [Ken Takagiwa] delete old file
f485b1d [Ken Takagiwa] fied input of socketTextDStream
dd6de81 [Ken Takagiwa] initial commit for socketTextStream
247fd74 [Ken Takagiwa] modified the code base on comment in https://github.com/tdas/spark/pull/10
4bcb318 [Ken Takagiwa] implementing transform function in Python
38adf95 [Ken Takagiwa] added reducedByKey not working yet
66fcfff [Ken Takagiwa] modify dstream.py to fix indent error
41886c2 [Ken Takagiwa] comment PythonDStream.PairwiseDStream
0b99bec [Ken] initial commit for pySparkStreaming
c214199 [giwa] added testcase for combineByKey
5625bdc [giwa] added gorupByKey testcase
10ab87b [giwa] added sparkContext as input parameter in StreamingContext
10b5b04 [giwa] removed wasted print in DStream
e54f986 [giwa] add comments
16aa64f [giwa] added TODO coments
74535d4 [giwa] added saveAsTextFiles and saveAsPickledFiles
f76c182 [giwa] remove waste duplicated code
18c8723 [giwa] modified streaming test case to add coment
13fb44c [giwa] basic function test cases are passed
3000b2b [giwa] all tests are passed if numSlice is 2 and the numver of each input is over 4
ff14070 [giwa] broke something
bcdec33 [giwa] WIP: solved partitioned and None is not recognized
270a9e1 [giwa] added mapValues and flatMapVaules WIP for glom and mapPartitions test
bb10956 [giwa] edited the comment to add more precise description
253a863 [giwa] removed unnesessary changes
3d37822 [giwa] fixed PEP-008 violation
f21cab3 [giwa] delete waste file
878bad7 [giwa] added basic operation test cases
ce2acd2 [giwa] WIP added test case
9ad6855 [giwa] WIP
1df77f5 [giwa] WIP: added PythonTestInputStream
1523b66 [giwa] WIP
8a0fbbc [giwa] update comment
fe648e3 [giwa] WIP
29c2bc5 [giwa] initial commit for testcase
4d40d63 [giwa] clean up dstream.py
c462bb3 [giwa] added stop in StreamingContext
d2c01ba [giwa] clean up examples
3c45cd2 [giwa] implemented reduce and count function in Dstream
b349649 [giwa] Removed the waste line
3b498e1 [Ken Takagiwa] Kill py4j callback server properly
84a9668 [Ken Takagiwa] tried to restart callback server
9ab8952 [Tathagata Das] Added extra line.
05e991b [Tathagata Das] Added missing file
b1d2a30 [Tathagata Das] Implemented DStream.foreachRDD in the Python API using Py4J callback server.
678e854 [Ken Takagiwa] remove waste file
0a8bbbb [Ken Takagiwa] clean up codes
bab31c1 [Ken Takagiwa] clean up code
72b9738 [Ken Takagiwa] fix map function
d3ee86a [Ken Takagiwa] added count operation but this implementation need double check
15feea9 [Ken Takagiwa] edit python sparkstreaming example
6f98e50 [Ken Takagiwa] reduceByKey is working
c455c8d [Ken Takagiwa] added reducedByKey not working yet
dc6995d [Ken Takagiwa] delete old file
b31446a [Ken Takagiwa] fixed typo of network_workdcount.py
ccfd214 [Ken Takagiwa] added doctest for pyspark.streaming.duration
0d1b954 [Ken Takagiwa] fied input of socketTextDStream
f746109 [Ken Takagiwa] initial commit for socketTextStream
bb7ccf3 [Ken Takagiwa] remove unused import in python
224fc5e [Ken Takagiwa] add empty line
d2099d8 [Ken Takagiwa] sorted the import following Spark coding convention
5bac7ec [Ken Takagiwa] revert streaming/pom.xml
e1df940 [Ken Takagiwa] revert pom.xml
494cae5 [Ken Takagiwa] remove not implemented DStream functions in python
17a74c6 [Ken Takagiwa] modified the code base on comment in https://github.com/tdas/spark/pull/10
1a0f065 [Ken Takagiwa] implementing transform function in Python
d7b4d6f [Ken Takagiwa] added reducedByKey not working yet
87438e2 [Ken Takagiwa] modify dstream.py to fix indent error
b406252 [Ken Takagiwa] comment PythonDStream.PairwiseDStream
454981d [Ken] initial commit for pySparkStreaming
150b94c [giwa] added some StreamingContextTestSuite
f7bc8f9 [giwa] WIP:added more test for StreamingContext
ee50c5a [giwa] added atexit to handle callback server
fdc9125 [giwa] added comment for StreamingContext.sparkContext
f5bfb70 [giwa] added StreamingContext.sparkContext
da09768 [giwa] added StreamingContext.remember
d68b568 [giwa] clean up code
4afa390 [giwa] clean up code
1fd6bc7 [Ken Takagiwa] Merge pull request #2 from mattf/giwa-master
d9d59fe [Matthew Farrellee] Fix scalastyle errors
67473a9 [giwa] delete not implemented functions
c97377c [giwa] delete inproper comments
2ea769e [giwa] added comment in dstream._test_output
3b27bd4 [giwa] remove the last brank line
acfcaeb [giwa] revert pom.xml
93f7637 [giwa] fixed explanaiton
50fd6f9 [giwa] revert pom.xml
4f82c89 [giwa] remove duplicated import
9d1de23 [giwa] revert pom.xml
7339df2 [giwa] fixed typo
9c85e48 [giwa] clean up exmples
24f95db [giwa] clen up examples
0d30109 [giwa] fixed pep8 violation
b7dab85 [giwa] improve test case
583e66d [giwa] move tests for streaming inside streaming directory
1d84142 [giwa] remove unimplement test
f0ea311 [giwa] clean up code
171edeb [giwa] clean up
4dedd2d [giwa] change test case not to use awaitTermination
268a6a5 [giwa] Changed awaitTermination not to call awaitTermincation in Scala. Just use time.sleep instread
09a28bf [giwa] improve testcases
58150f5 [giwa] Changed the test case to focus the test operation
199e37f [giwa] adopted the latest compression way of python command
185fdbf [giwa] merge with master
f1798c4 [giwa] merge with master
e70f706 [giwa] added testcase for combineByKey
e162822 [giwa] added gorupByKey testcase
97742fe [giwa] added sparkContext as input parameter in StreamingContext
14d4c0e [giwa] removed wasted print in DStream
6d8190a [giwa] add comments
4aa99e4 [giwa] added TODO coments
e9fab72 [giwa] added saveAsTextFiles and saveAsPickledFiles
94f2b65 [giwa] remove waste duplicated code
580fbc2 [giwa] modified streaming test case to add coment
99e4bb3 [giwa] basic function test cases are passed
7051a84 [giwa] all tests are passed if numSlice is 2 and the numver of each input is over 4
35933e1 [giwa] broke something
9767712 [giwa] WIP: solved partitioned and None is not recognized
4f2d7e6 [giwa] added mapValues and flatMapVaules WIP for glom and mapPartitions test
33c0f94d [giwa] edited the comment to add more precise description
774f18d [giwa] removed unnesessary changes
3a671cc [giwa] remove export PYSPARK_PYTHON in spark submit
8efa266 [giwa] fixed PEP-008 violation
fa75d71 [giwa] delete waste file
7f96294 [giwa] added basic operation test cases
3dda31a [giwa] WIP added test case
1f68b78 [giwa] WIP
c05922c [giwa] WIP: added PythonTestInputStream
1fd12ae [giwa] WIP
c880a33 [giwa] update comment
5d22c92 [giwa] WIP
ea4b06b [giwa] initial commit for testcase
5a9b525 [giwa] clean up dstream.py
79c5809 [giwa] added stop in StreamingContext
189dcea [giwa] clean up examples
b8d7d24 [giwa] implemented reduce and count function in Dstream
b6468e6 [giwa] Removed the waste line
b47b5fd [Ken Takagiwa] Kill py4j callback server properly
19ddcdd [Ken Takagiwa] tried to restart callback server
c9fc124 [Tathagata Das] Added extra line.
4caae3f [Tathagata Das] Added missing file
4eff053 [Tathagata Das] Implemented DStream.foreachRDD in the Python API using Py4J callback server.
5e822d4 [Ken Takagiwa] remove waste file
aeaf8a5 [Ken Takagiwa] clean up codes
9fa249b [Ken Takagiwa] clean up code
05459c6 [Ken Takagiwa] fix map function
a9f4ecb [Ken Takagiwa] added count operation but this implementation need double check
d1ee6ca [Ken Takagiwa] edit python sparkstreaming example
0b8b7d0 [Ken Takagiwa] reduceByKey is working
d25d5cf [Ken Takagiwa] added reducedByKey not working yet
7f7c5d1 [Ken Takagiwa] delete old file
967dc26 [Ken Takagiwa] fixed typo of network_workdcount.py
57fb740 [Ken Takagiwa] added doctest for pyspark.streaming.duration
4b69fb1 [Ken Takagiwa] fied input of socketTextDStream
02f618a [Ken Takagiwa] initial commit for socketTextStream
4ce4058 [Ken Takagiwa] remove unused import in python
856d98e [Ken Takagiwa] add empty line
490e338 [Ken Takagiwa] sorted the import following Spark coding convention
5594bd4 [Ken Takagiwa] revert pom.xml
2adca84 [Ken Takagiwa] remove not implemented DStream functions in python
e551e13 [Ken Takagiwa] add coment for hack why PYSPARK_PYTHON is needed in spark-submit
3758175 [Ken Takagiwa] add coment for hack why PYSPARK_PYTHON is needed in spark-submit
c5518b4 [Ken Takagiwa] modified the code base on comment in https://github.com/tdas/spark/pull/10
dcf243f [Ken Takagiwa] implementing transform function in Python
9af03f4 [Ken Takagiwa] added reducedByKey not working yet
6e0d9c7 [Ken Takagiwa] modify dstream.py to fix indent error
e497b9b [Ken Takagiwa] comment PythonDStream.PairwiseDStream
5c3a683 [Ken] initial commit for pySparkStreaming
665bfdb [giwa] added testcase for combineByKey
a3d2379 [giwa] added gorupByKey testcase
636090a [giwa] added sparkContext as input parameter in StreamingContext
e7ebb08 [giwa] removed wasted print in DStream
d8b593b [giwa] add comments
ea9c873 [giwa] added TODO coments
89ae38a [giwa] added saveAsTextFiles and saveAsPickledFiles
e3033fc [giwa] remove waste duplicated code
a14c7e1 [giwa] modified streaming test case to add coment
536def4 [giwa] basic function test cases are passed
2112638 [giwa] all tests are passed if numSlice is 2 and the numver of each input is over 4
080541a [giwa] broke something
0704b86 [giwa] WIP: solved partitioned and None is not recognized
90a6484 [giwa] added mapValues and flatMapVaules WIP for glom and mapPartitions test
a65f302 [giwa] edited the comment to add more precise description
bdde697 [giwa] removed unnesessary changes
e8c7bfc [giwa] remove export PYSPARK_PYTHON in spark submit
3334169 [giwa] fixed PEP-008 violation
db0a303 [giwa] delete waste file
2cfd3a0 [giwa] added basic operation test cases
90ae568 [giwa] WIP added test case
a120d07 [giwa] WIP
f671cdb [giwa] WIP: added PythonTestInputStream
56fae45 [giwa] WIP
e35e101 [giwa] Merge branch 'master' into testcase
ba5112d [giwa] update comment
28aa56d [giwa] WIP
fb08559 [giwa] initial commit for testcase
a613b85 [giwa] clean up dstream.py
c40c0ef [giwa] added stop in StreamingContext
31e4260 [giwa] clean up examples
d2127d6 [giwa] implemented reduce and count function in Dstream
48f7746 [giwa] Removed the waste line
0f83eaa [Ken Takagiwa] delete py4j 0.8.1
1679808 [Ken Takagiwa] Kill py4j callback server properly
f96cd4e [Ken Takagiwa] tried to restart callback server
fe86198 [Ken Takagiwa] add py4j 0.8.2.1 but server is not launched
1064fe0 [Ken Takagiwa] Merge branch 'master' of https://github.com/giwa/spark
28c6620 [Ken Takagiwa] Implemented DStream.foreachRDD in the Python API using Py4J callback server
85b0fe1 [Ken Takagiwa] Merge pull request #1 from tdas/python-foreach
54e2e8c [Tathagata Das] Added extra line.
e185338 [Tathagata Das] Added missing file
a778d4b [Tathagata Das] Implemented DStream.foreachRDD in the Python API using Py4J callback server.
cc2092b [Ken Takagiwa] remove waste file
d042ac6 [Ken Takagiwa] clean up codes
84a021f [Ken Takagiwa] clean up code
bd20e17 [Ken Takagiwa] fix map function
d01a125 [Ken Takagiwa] added count operation but this implementation need double check
7d05109 [Ken Takagiwa] merge with remote branch
ae464e0 [Ken Takagiwa] edit python sparkstreaming example
04af046 [Ken Takagiwa] reduceByKey is working
3b6d7b0 [Ken Takagiwa] implementing transform function in Python
571d52d [Ken Takagiwa] added reducedByKey not working yet
5720979 [Ken Takagiwa] delete old file
e604fcb [Ken Takagiwa] fixed typo of network_workdcount.py
4b7c08b [Ken Takagiwa] Merge branch 'master' of https://github.com/giwa/spark
ce7d426 [Ken Takagiwa] added doctest for pyspark.streaming.duration
a8c9fd5 [Ken Takagiwa] fixed for socketTextStream
a61fa9e [Ken Takagiwa] fied input of socketTextDStream
1e84f41 [Ken Takagiwa] initial commit for socketTextStream
6d012f7 [Ken Takagiwa] remove unused import in python
25d30d5 [Ken Takagiwa] add empty line
6e0a64a [Ken Takagiwa] sorted the import following Spark coding convention
fa4a7fc [Ken Takagiwa] revert streaming/pom.xml
8f8202b [Ken Takagiwa] revert streaming pom.xml
c9d79dd [Ken Takagiwa] revert pom.xml
57e3e52 [Ken Takagiwa] remove not implemented DStream functions in python
0a516f5 [Ken Takagiwa] add coment for hack why PYSPARK_PYTHON is needed in spark-submit
a7a0b5c [Ken Takagiwa] add coment for hack why PYSPARK_PYTHON is needed in spark-submit
72bfc66 [Ken Takagiwa] modified the code base on comment in https://github.com/tdas/spark/pull/10
69e9cd3 [Ken Takagiwa] implementing transform function in Python
94a0787 [Ken Takagiwa] added reducedByKey not working yet
88068cf [Ken Takagiwa] modify dstream.py to fix indent error
1367be5 [Ken Takagiwa] comment PythonDStream.PairwiseDStream
eb2b3ba [Ken] Merge remote-tracking branch 'upstream/master'
d8e51f9 [Ken] initial commit for pySparkStreaming
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SQL example code for Python, as shown on [SQL Programming Guide](https://spark.apache.org/docs/1.0.2/sql-programming-guide.html)
Author: jyotiska <jyotiska123@gmail.com>
Closes #2521 from jyotiska/sql_example and squashes the following commits:
1471dcb [jyotiska] added imports for sql
b25e436 [jyotiska] pep 8 compliance
43fd10a [jyotiska] lines broken to maintain 80 char limit
b4fdf4e [jyotiska] removed blank lines
83d5ab7 [jyotiska] added inferschema and applyschema to the demo
306667e [jyotiska] replaced blank line with end line
c90502a [jyotiska] fixed new line
4939a70 [jyotiska] added new line at end for python style
0b46148 [jyotiska] fixed appname for python sql example
8f67b5b [jyotiska] added python sql example
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Call SparkContext.stop() in all examples (and touch up minor nearby code style issues while at it)
Author: Sean Owen <sowen@cloudera.com>
Closes #2575 from srowen/SPARK-2626 and squashes the following commits:
5b2baae [Sean Owen] Call SparkContext.stop() in all examples (and touch up minor nearby code style issues while at it)
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https://issues.apache.org/jira/browse/SPARK-3389
Author: Uri Laserson <laserson@cloudera.com>
Closes #2256 from laserson/SPARK-3389 and squashes the following commits:
0ed363e [Uri Laserson] PEP8'd the python file
0b4b380 [Uri Laserson] Moved converter to examples and added python example
eecf4dc [Uri Laserson] [SPARK-3389] Add Converter for ease of Parquet reading in PySpark
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Author: Matthew Farrellee <matt@redhat.com>
Closes #2304 from mattf/SPARK-1701-partition-over-slice-for-python-examples and squashes the following commits:
928a581 [Matthew Farrellee] [SPARK-1701] [PySpark] remove slice terminology from python examples
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This PR resolves [SPARK-3361](https://issues.apache.org/jira/browse/SPARK-3361) by expanding the PEP 8 checks to cover the remaining Python code base:
* The EC2 script
* All Python / PySpark examples
Author: Nicholas Chammas <nicholas.chammas@gmail.com>
Closes #2297 from nchammas/pep8-rulez and squashes the following commits:
1e5ac9a [Nicholas Chammas] PEP 8 fixes to Python examples
c3dbeff [Nicholas Chammas] PEP 8 fixes to EC2 script
65ef6e8 [Nicholas Chammas] expand PEP 8 checks
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Added examples for statistical summarization:
* Scala: StatisticalSummary.scala
** Tests: correlation, MultivariateOnlineSummarizer
* python: statistical_summary.py
** Tests: correlation (since MultivariateOnlineSummarizer has no Python API)
Added examples for random and sampled RDDs:
* Scala: RandomAndSampledRDDs.scala
* python: random_and_sampled_rdds.py
* Both test:
** RandomRDDGenerators.normalRDD, normalVectorRDD
** RDD.sample, takeSample, sampleByKey
Added sc.stop() to all examples.
CorrelationSuite.scala
* Added 1 test for RDDs with only 1 value
RowMatrix.scala
* numCols(): Added check for numRows = 0, with error message.
* computeCovariance(): Added check for numRows <= 1, with error message.
Python SparseVector (pyspark/mllib/linalg.py)
* Added toDense() function
python/run-tests script
* Added stat.py (doc test)
CC: mengxr dorx Main changes were examples to show usage across APIs.
Author: Joseph K. Bradley <joseph.kurata.bradley@gmail.com>
Closes #1878 from jkbradley/mllib-stats-api-check and squashes the following commits:
ea5c047 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
dafebe2 [Joseph K. Bradley] Bug fixes for examples SampledRDDs.scala and sampled_rdds.py: Check for division by 0 and for missing key in maps.
8d1e555 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
60c72d9 [Joseph K. Bradley] Fixed stat.py doc test to work for Python versions printing nan or NaN.
b20d90a [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
4e5d15e [Joseph K. Bradley] Changed pyspark/mllib/stat.py doc tests to use NaN instead of nan.
32173b7 [Joseph K. Bradley] Stats examples update.
c8c20dc [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
cf70b07 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
0b7cec3 [Joseph K. Bradley] Small updates based on code review. Renamed statistical_summary.py to correlations.py
ab48f6e [Joseph K. Bradley] RowMatrix.scala * numCols(): Added check for numRows = 0, with error message. * computeCovariance(): Added check for numRows <= 1, with error message.
65e4ebc [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
8195c78 [Joseph K. Bradley] Added examples for random and sampled RDDs: * Scala: RandomAndSampledRDDs.scala * python: random_and_sampled_rdds.py * Both test: ** RandomRDDGenerators.normalRDD, normalVectorRDD ** RDD.sample, takeSample, sampleByKey
064985b [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into mllib-stats-api-check
ee918e9 [Joseph K. Bradley] Added examples for statistical summarization: * Scala: StatisticalSummary.scala ** Tests: correlation, MultivariateOnlineSummarizer * python: statistical_summary.py ** Tests: correlation (since MultivariateOnlineSummarizer has no Python API)
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Small DecisionTree updates:
* Changed main DecisionTree aggregate to treeAggregate.
* Fixed bug in python example decision_tree_runner.py with missing argument (since categoricalFeaturesInfo is no longer an optional argument for trainClassifier).
* Fixed same bug in python doc tests, and added tree.py to doc tests.
CC: mengxr
Author: Joseph K. Bradley <joseph.kurata.bradley@gmail.com>
Closes #2015 from jkbradley/dt-opt2 and squashes the following commits:
b5114fa [Joseph K. Bradley] Fixed python tree.py doc test (extra newline)
8e4665d [Joseph K. Bradley] Added tree.py to python doc tests. Fixed bug from missing categoricalFeaturesInfo argument.
b7b2922 [Joseph K. Bradley] Fixed bug in python example decision_tree_runner.py with missing argument. Changed main DecisionTree aggregate to treeAggregate.
85bbc1f [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-opt2
66d076f [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-opt2
a0ed0da [Joseph K. Bradley] Renamed DTMetadata to DecisionTreeMetadata. Small doc updates.
3726d20 [Joseph K. Bradley] Small code improvements based on code review.
ac0b9f8 [Joseph K. Bradley] Small updates based on code review. Main change: Now using << instead of math.pow.
db0d773 [Joseph K. Bradley] scala style fix
6a38f48 [Joseph K. Bradley] Added DTMetadata class for cleaner code
931a3a7 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-opt2
797f68a [Joseph K. Bradley] Fixed DecisionTreeSuite bug for training second level. Needed to update treePointToNodeIndex with groupShift.
f40381c [Joseph K. Bradley] Merge branch 'dt-opt1' into dt-opt2
5f2dec2 [Joseph K. Bradley] Fixed scalastyle issue in TreePoint
6b5651e [Joseph K. Bradley] Updates based on code review. 1 major change: persisting to memory + disk, not just memory.
2d2aaaf [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-opt1
26d10dd [Joseph K. Bradley] Removed tree/model/Filter.scala since no longer used. Removed debugging println calls in DecisionTree.scala.
356daba [Joseph K. Bradley] Merge branch 'dt-opt1' into dt-opt2
430d782 [Joseph K. Bradley] Added more debug info on binning error. Added some docs.
d036089 [Joseph K. Bradley] Print timing info to logDebug.
e66f1b1 [Joseph K. Bradley] TreePoint * Updated doc * Made some methods private
8464a6e [Joseph K. Bradley] Moved TimeTracker to tree/impl/ in its own file, and cleaned it up. Removed debugging println calls from DecisionTree. Made TreePoint extend Serialiable
a87e08f [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-opt1
c1565a5 [Joseph K. Bradley] Small DecisionTree updates: * Simplification: Updated calculateGainForSplit to take aggregates for a single (feature, split) pair. * Internal doc: findAggForOrderedFeatureClassification
b914f3b [Joseph K. Bradley] DecisionTree optimization: eliminated filters + small changes
b2ed1f3 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-opt
0f676e2 [Joseph K. Bradley] Optimizations + Bug fix for DecisionTree
3211f02 [Joseph K. Bradley] Optimizing DecisionTree * Added TreePoint representation to avoid calling findBin multiple times. * (not working yet, but debugging)
f61e9d2 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-timing
bcf874a [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-timing
511ec85 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into dt-timing
a95bc22 [Joseph K. Bradley] timing for DecisionTree internals
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JIRA: https://issues.apache.org/jira/browse/SPARK-2736
This patch includes:
1. An Avro converter that converts Avro data types to Python. It handles all 3 Avro data mappings (Generic, Specific and Reflect).
2. An example Python script for reading Avro files using AvroKeyInputFormat and the converter.
3. Fixing a classloading issue.
cc @MLnick @JoshRosen @mateiz
Author: Kan Zhang <kzhang@apache.org>
Closes #1916 from kanzhang/SPARK-2736 and squashes the following commits:
02443f8 [Kan Zhang] [SPARK-2736] Adding .avsc files to .rat-excludes
f74e9a9 [Kan Zhang] [SPARK-2736] nit: clazz -> className
82cc505 [Kan Zhang] [SPARK-2736] Update data sample
0be7761 [Kan Zhang] [SPARK-2736] Example pyspark script and data files
c8e5881 [Kan Zhang] [SPARK-2736] Trying to work with all 3 Avro data models
2271a5b [Kan Zhang] [SPARK-2736] Using the right class loader to find Avro classes
536876b [Kan Zhang] [SPARK-2736] Adding Avro to Java converter
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Added experimental Python API for Decision Trees.
API:
* class DecisionTreeModel
** predict() for single examples and RDDs, taking both feature vectors and LabeledPoints
** numNodes()
** depth()
** __str__()
* class DecisionTree
** trainClassifier()
** trainRegressor()
** train()
Examples and testing:
* Added example testing classification and regression with batch prediction: examples/src/main/python/mllib/tree.py
* Have also tested example usage in doc of python/pyspark/mllib/tree.py which tests single-example prediction with dense and sparse vectors
Also: Small bug fix in python/pyspark/mllib/_common.py: In _linear_predictor_typecheck, changed check for RDD to use isinstance() instead of type() in order to catch RDD subclasses.
CC mengxr manishamde
Author: Joseph K. Bradley <joseph.kurata.bradley@gmail.com>
Closes #1727 from jkbradley/decisiontree-python-new and squashes the following commits:
3744488 [Joseph K. Bradley] Renamed test tree.py to decision_tree_runner.py Small updates based on github review.
6b86a9d [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
affceb9 [Joseph K. Bradley] * Fixed bug in doc tests in pyspark/mllib/util.py caused by change in loadLibSVMFile behavior. (It used to threshold labels at 0 to make them 0/1, but it now leaves them as they are.) * Fixed small bug in loadLibSVMFile: If a data file had no features, then loadLibSVMFile would create a single all-zero feature.
67a29bc [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
cf46ad7 [Joseph K. Bradley] Python DecisionTreeModel * predict(empty RDD) returns an empty RDD instead of an error. * Removed support for calling predict() on LabeledPoint and RDD[LabeledPoint] * predict() does not cache serialized RDD any more.
aa29873 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
bf21be4 [Joseph K. Bradley] removed old run() func from DecisionTree
fa10ea7 [Joseph K. Bradley] Small style update
7968692 [Joseph K. Bradley] small braces typo fix
e34c263 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
4801b40 [Joseph K. Bradley] Small style update to DecisionTreeSuite
db0eab2 [Joseph K. Bradley] Merge branch 'decisiontree-bugfix2' into decisiontree-python-new
6873fa9 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
225822f [Joseph K. Bradley] Bug: In DecisionTree, the method sequentialBinSearchForOrderedCategoricalFeatureInClassification() indexed bins from 0 to (math.pow(2, featureCategories.toInt - 1) - 1). This upper bound is the bound for unordered categorical features, not ordered ones. The upper bound should be the arity (i.e., max value) of the feature.
93953f1 [Joseph K. Bradley] Likely done with Python API.
6df89a9 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
4562c08 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
665ba78 [Joseph K. Bradley] Small updates towards Python DecisionTree API
188cb0d [Joseph K. Bradley] Merge branch 'decisiontree-bugfix' into decisiontree-python-new
6622247 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
b8fac57 [Joseph K. Bradley] Finished Python DecisionTree API and example but need to test a bit more.
2b20c61 [Joseph K. Bradley] Small doc and style updates
1b29c13 [Joseph K. Bradley] Merge branch 'decisiontree-bugfix' into decisiontree-python-new
584449a [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
dab0b67 [Joseph K. Bradley] Added documentation for DecisionTree internals
8bb8aa0 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-bugfix
978cfcf [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-bugfix
6eed482 [Joseph K. Bradley] In DecisionTree: Changed from using procedural syntax for functions returning Unit to explicitly writing Unit return type.
376dca2 [Joseph K. Bradley] Updated meaning of maxDepth by 1 to fit scikit-learn and rpart. * In code, replaced usages of maxDepth <-- maxDepth + 1 * In params, replace settings of maxDepth <-- maxDepth - 1
e06e423 [Joseph K. Bradley] Merge branch 'decisiontree-bugfix' into decisiontree-python-new
bab3f19 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
59750f8 [Joseph K. Bradley] * Updated Strategy to check numClassesForClassification only if algo=Classification. * Updates based on comments: ** DecisionTreeRunner *** Made dataFormat arg default to libsvm ** Small cleanups ** tree.Node: Made recursive helper methods private, and renamed them.
52e17c5 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-bugfix
f5a036c [Joseph K. Bradley] Merge branch 'decisiontree-bugfix' into decisiontree-python-new
da50db7 [Joseph K. Bradley] Added one more test to DecisionTreeSuite: stump with 2 continuous variables for binary classification. Caused problems in past, but fixed now.
8e227ea [Joseph K. Bradley] Changed Strategy so it only requires numClassesForClassification >= 2 for classification
cd1d933 [Joseph K. Bradley] Merge branch 'decisiontree-bugfix' into decisiontree-python-new
8ea8750 [Joseph K. Bradley] Bug fix: Off-by-1 when finding thresholds for splits for continuous features.
8a758db [Joseph K. Bradley] Merge branch 'decisiontree-bugfix' into decisiontree-python-new
5fe44ed [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-python-new
2283df8 [Joseph K. Bradley] 2 bug fixes.
73fbea2 [Joseph K. Bradley] Merge remote-tracking branch 'upstream/master' into decisiontree-bugfix
5f920a1 [Joseph K. Bradley] Demonstration of bug before submitting fix: Updated DecisionTreeSuite so that 3 tests fail. Will describe bug in next commit.
f825352 [Joseph K. Bradley] Wrote Python API and example for DecisionTree. Also added toString, depth, and numNodes methods to DecisionTreeModel.
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JIRA issue: https://issues.apache.org/jira/browse/SPARK-2024
This PR is a followup to #455 and adds capabilities for saving PySpark RDDs using SequenceFile or any Hadoop OutputFormats.
* Added RDD methods ```saveAsSequenceFile```, ```saveAsHadoopFile``` and ```saveAsHadoopDataset```, for both old and new MapReduce APIs.
* Default converter for converting common data types to Writables. Users may specify custom converters to convert to desired data types.
* No out-of-box support for reading/writing arrays, since ArrayWritable itself doesn't have a no-arg constructor for creating an empty instance upon reading. Users need to provide ArrayWritable subtypes. Custom converters for converting arrays to suitable ArrayWritable subtypes are also needed when writing. When reading, the default converter will convert any custom ArrayWritable subtypes to ```Object[]``` and they get pickled to Python tuples.
* Added HBase and Cassandra output examples to show how custom output formats and converters can be used.
cc MLnick mateiz ahirreddy pwendell
Author: Kan Zhang <kzhang@apache.org>
Closes #1338 from kanzhang/SPARK-2024 and squashes the following commits:
c01e3ef [Kan Zhang] [SPARK-2024] code formatting
6591e37 [Kan Zhang] [SPARK-2024] renaming pickled -> pickledRDD
d998ad6 [Kan Zhang] [SPARK-2024] refectoring to get method params below 10
57a7a5e [Kan Zhang] [SPARK-2024] correcting typo
75ca5bd [Kan Zhang] [SPARK-2024] Better type checking for batch serialized RDD
0bdec55 [Kan Zhang] [SPARK-2024] Refactoring newly added tests
9f39ff4 [Kan Zhang] [SPARK-2024] Adding 2 saveAsHadoopDataset tests
0c134f3 [Kan Zhang] [SPARK-2024] Test refactoring and adding couple unbatched cases
7a176df [Kan Zhang] [SPARK-2024] Add saveAsSequenceFile to PySpark
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implementations added to Examples
[SPARK-2434][MLlib]: Warning messages that refer users to the original MLlib implementations of some popular example machine learning algorithms added both in the comments and the code. The following examples have been modified:
Scala:
* LocalALS
* LocalFileLR
* LocalKMeans
* LocalLP
* SparkALS
* SparkHdfsLR
* SparkKMeans
* SparkLR
Python:
* kmeans.py
* als.py
* logistic_regression.py
Author: Burak <brkyvz@gmail.com>
Closes #1515 from brkyvz/SPARK-2434 and squashes the following commits:
7505da9 [Burak] [SPARK-2434][MLlib]: Warning messages added, scalastyle errors fixed, and added missing punctuation
b96b522 [Burak] [SPARK-2434][MLlib]: Warning messages added and scalastyle errors fixed
4762f39 [Burak] [SPARK-2434]: Warning messages added
17d3d83 [Burak] SPARK-2434: Added warning messages to the naive implementations of the example algorithms
2cb5301 [Burak] SPARK-2434: Warning messages redirecting to original implementaions added.
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So I finally resurrected this PR. It seems the old one against the incubator mirror is no longer available, so I cannot reference it.
This adds initial support for reading Hadoop ```SequenceFile```s, as well as arbitrary Hadoop ```InputFormat```s, in PySpark.
# Overview
The basics are as follows:
1. ```PythonRDD``` object contains the relevant methods, that are in turn invoked by ```SparkContext``` in PySpark
2. The SequenceFile or InputFormat is read on the Scala side and converted from ```Writable``` instances to the relevant Scala classes (in the case of primitives)
3. Pyrolite is used to serialize Java objects. If this fails, the fallback is ```toString```
4. ```PickleSerializer``` on the Python side deserializes.
This works "out the box" for simple ```Writable```s:
* ```Text```
* ```IntWritable```, ```DoubleWritable```, ```FloatWritable```
* ```NullWritable```
* ```BooleanWritable```
* ```BytesWritable```
* ```MapWritable```
It also works for simple, "struct-like" classes. Due to the way Pyrolite works, this requires that the classes satisfy the JavaBeans convenstions (i.e. with fields and a no-arg constructor and getters/setters). (Perhaps in future some sugar for case classes and reflection could be added).
I've tested it out with ```ESInputFormat``` as an example and it works very nicely:
```python
conf = {"es.resource" : "index/type" }
rdd = sc.newAPIHadoopRDD("org.elasticsearch.hadoop.mr.EsInputFormat", "org.apache.hadoop.io.NullWritable", "org.elasticsearch.hadoop.mr.LinkedMapWritable", conf=conf)
rdd.first()
```
I suspect for things like HBase/Cassandra it will be a bit trickier to get it to work out the box.
# Some things still outstanding:
1. ~~Requires ```msgpack-python``` and will fail without it. As originally discussed with Josh, add a ```as_strings``` argument that defaults to ```False```, that can be used if ```msgpack-python``` is not available~~
2. ~~I see from https://github.com/apache/spark/pull/363 that Pyrolite is being used there for SerDe between Scala and Python. @ahirreddy @mateiz what is the plan behind this - is Pyrolite preferred? It seems from a cursory glance that adapting the ```msgpack```-based SerDe here to use Pyrolite wouldn't be too hard~~
3. ~~Support the key and value "wrapper" that would allow a Scala/Java function to be plugged in that would transform whatever the key/value Writable class is into something that can be serialized (e.g. convert some custom Writable to a JavaBean or ```java.util.Map``` that can be easily serialized)~~
4. Support ```saveAsSequenceFile``` and ```saveAsHadoopFile``` etc. This would require SerDe in the reverse direction, that can be handled by Pyrolite. Will work on this as a separate PR
Author: Nick Pentreath <nick.pentreath@gmail.com>
Closes #455 from MLnick/pyspark-inputformats and squashes the following commits:
268df7e [Nick Pentreath] Documentation changes mer @pwendell comments
761269b [Nick Pentreath] Address @pwendell comments, simplify default writable conversions and remove registry.
4c972d8 [Nick Pentreath] Add license headers
d150431 [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
cde6af9 [Nick Pentreath] Parameterize converter trait
5ebacfa [Nick Pentreath] Update docs for PySpark input formats
a985492 [Nick Pentreath] Move Converter examples to own package
365d0be [Nick Pentreath] Make classes private[python]. Add docs and @Experimental annotation to Converter interface.
eeb8205 [Nick Pentreath] Fix path relative to SPARK_HOME in tests
1eaa08b [Nick Pentreath] HBase -> Cassandra app name oversight
3f90c3e [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
2c18513 [Nick Pentreath] Add examples for reading HBase and Cassandra InputFormats from Python
b65606f [Nick Pentreath] Add converter interface
5757f6e [Nick Pentreath] Default key/value classes for sequenceFile asre None
085b55f [Nick Pentreath] Move input format tests to tests.py and clean up docs
43eb728 [Nick Pentreath] PySpark InputFormats docs into programming guide
94beedc [Nick Pentreath] Clean up args in PythonRDD. Set key/value converter defaults to None for PySpark context.py methods
1a4a1d6 [Nick Pentreath] Address @mateiz style comments
01e0813 [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
15a7d07 [Nick Pentreath] Remove default args for key/value classes. Arg names to camelCase
9fe6bd5 [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
84fe8e3 [Nick Pentreath] Python programming guide space formatting
d0f52b6 [Nick Pentreath] Python programming guide
7caa73a [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
93ef995 [Nick Pentreath] Add back context.py changes
9ef1896 [Nick Pentreath] Recover earlier changes lost in previous merge for serializers.py
077ecb2 [Nick Pentreath] Recover earlier changes lost in previous merge for context.py
5af4770 [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
35b8e3a [Nick Pentreath] Another fix for test ordering
bef3afb [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
e001b94 [Nick Pentreath] Fix test failures due to ordering
78978d9 [Nick Pentreath] Add doc for SequenceFile and InputFormat support to Python programming guide
64eb051 [Nick Pentreath] Scalastyle fix
e7552fa [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
44f2857 [Nick Pentreath] Remove msgpack dependency and switch serialization to Pyrolite, plus some clean up and refactoring
c0ebfb6 [Nick Pentreath] Change sequencefile test data generator to easily be called from PySpark tests
1d7c17c [Nick Pentreath] Amend tests to auto-generate sequencefile data in temp dir
17a656b [Nick Pentreath] remove binary sequencefile for tests
f60959e [Nick Pentreath] Remove msgpack dependency and serializer from PySpark
450e0a2 [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
31a2fff [Nick Pentreath] Scalastyle fixes
fc5099e [Nick Pentreath] Add Apache license headers
4e08983 [Nick Pentreath] Clean up docs for PySpark context methods
b20ec7e [Nick Pentreath] Clean up merge duplicate dependencies
951c117 [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
f6aac55 [Nick Pentreath] Bring back msgpack
9d2256e [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
1bbbfb0 [Nick Pentreath] Clean up SparkBuild from merge
a67dfad [Nick Pentreath] Clean up Msgpack serialization and registering
7237263 [Nick Pentreath] Add back msgpack serializer and hadoop file code lost during merging
25da1ca [Nick Pentreath] Add generator for nulls, bools, bytes and maps
65360d5 [Nick Pentreath] Adding test SequenceFiles
0c612e5 [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
d72bf18 [Nick Pentreath] msgpack
dd57922 [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
e67212a [Nick Pentreath] Add back msgpack dependency
f2d76a0 [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
41856a5 [Nick Pentreath] Merge branch 'master' into pyspark-inputformats
97ef708 [Nick Pentreath] Remove old writeToStream
2beeedb [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
795a763 [Nick Pentreath] Change name to WriteInputFormatTestDataGenerator. Cleanup some var names. Use SPARK_HOME in path for writing test sequencefile data.
174f520 [Nick Pentreath] Add back graphx settings
703ee65 [Nick Pentreath] Add back msgpack
619c0fa [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
1c8efbc [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
eb40036 [Nick Pentreath] Remove unused comment lines
4d7ef2e [Nick Pentreath] Fix indentation
f1d73e3 [Nick Pentreath] mergeConfs returns a copy rather than mutating one of the input arguments
0f5cd84 [Nick Pentreath] Remove unused pair UTF8 class. Add comments to msgpack deserializer
4294cbb [Nick Pentreath] Add old Hadoop api methods. Clean up and expand comments. Clean up argument names
818a1e6 [Nick Pentreath] Add seqencefile and Hadoop InputFormat support to PythonRDD
4e7c9e3 [Nick Pentreath] Merge remote-tracking branch 'upstream/master' into pyspark-inputformats
c304cc8 [Nick Pentreath] Adding supporting sequncefiles for tests. Cleaning up
4b0a43f [Nick Pentreath] Refactoring utils into own objects. Cleaning up old commented-out code
d86325f [Nick Pentreath] Initial WIP of PySpark support for SequenceFile and arbitrary Hadoop InputFormat
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Author: Reynold Xin <rxin@apache.org>
Closes #870 from rxin/examples-python-pep8 and squashes the following commits:
2829e84 [Reynold Xin] Fix PEP8 violations in examples/src/main/python.
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