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Author: zc he <farseer90718@gmail.com>
Closes #8188 from farseer90718/farseer-patch-1.
(cherry picked from commit 71a3af8a94f900a26ac7094f22ec1216cab62e15)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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SPARK-3190 was originally fixed by 96df92906978c5f58e0cc8ff5eebe5b35a08be3b, but a5ef58113667ff73562ce6db381cff96a0b354b0 introduced a regression during refactoring. This commit fixes the regression.
Author: Ankur Dave <ankurdave@gmail.com>
Closes #7923 from ankurdave/SPARK-3190-reopening and squashes the following commits:
a3e1b23 [Ankur Dave] Fix VertexRDD.count() overflow regression
(cherry picked from commit 9e952ecbce670e9b532a1c664a4d03b66e404112)
Signed-off-by: Reynold Xin <rxin@databricks.com>
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Pregel code contains two consecutive joins:
```
g.vertices.innerJoin(messages)(vprog)
...
g = g.outerJoinVertices(newVerts)
{ (vid, old, newOpt) => newOpt.getOrElse(old) }
```
This can be simplified with one join. ankurdave proposed a patch based on our discussion in the mailing list: https://www.mail-archive.com/devspark.apache.org/msg10316.html
Author: Alexander Ulanov <nashb@yandex.ru>
Closes #7749 from avulanov/SPARK-9436-pregel and squashes the following commits:
8568e06 [Alexander Ulanov] Pregel simplification patch
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The change here is to keep the cached RDDs in the graph object so that when the graph.unpersist() is called these RDDs are correctly unpersisted.
```java
import org.apache.spark.graphx._
import org.apache.spark.rdd.RDD
import org.slf4j.LoggerFactory
import org.apache.spark.graphx.util.GraphGenerators
// Create an RDD for the vertices
val users: RDD[(VertexId, (String, String))] =
sc.parallelize(Array((3L, ("rxin", "student")), (7L, ("jgonzal", "postdoc")),
(5L, ("franklin", "prof")), (2L, ("istoica", "prof"))))
// Create an RDD for edges
val relationships: RDD[Edge[String]] =
sc.parallelize(Array(Edge(3L, 7L, "collab"), Edge(5L, 3L, "advisor"),
Edge(2L, 5L, "colleague"), Edge(5L, 7L, "pi")))
// Define a default user in case there are relationship with missing user
val defaultUser = ("John Doe", "Missing")
// Build the initial Graph
val graph = Graph(users, relationships, defaultUser)
graph.cache().numEdges
graph.unpersist()
sc.getPersistentRDDs.foreach( r => println( r._2.toString))
```
Author: tien-dungle <tien-dung.le@realimpactanalytics.com>
Closes #7469 from tien-dungle/SPARK-9109_Graphx-unpersist and squashes the following commits:
8d87997 [tien-dungle] Keep the cached edge in the graph
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existing uses
This pull request adds a Scalastyle regex rule which fails the style check if `Class.forName` is used directly. `Class.forName` always loads classes from the default / system classloader, but in a majority of cases, we should be using Spark's own `Utils.classForName` instead, which tries to load classes from the current thread's context classloader and falls back to the classloader which loaded Spark when the context classloader is not defined.
<!-- Reviewable:start -->
[<img src="https://reviewable.io/review_button.png" height=40 alt="Review on Reviewable"/>](https://reviewable.io/reviews/apache/spark/7350)
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Author: Josh Rosen <joshrosen@databricks.com>
Closes #7350 from JoshRosen/ban-Class.forName and squashes the following commits:
e3e96f7 [Josh Rosen] Merge remote-tracking branch 'origin/master' into ban-Class.forName
c0b7885 [Josh Rosen] Hopefully fix the last two cases
d707ba7 [Josh Rosen] Fix uses of Class.forName that I missed in my first cleanup pass
046470d [Josh Rosen] Merge remote-tracking branch 'origin/master' into ban-Class.forName
62882ee [Josh Rosen] Fix uses of Class.forName or add exclusion.
d9abade [Josh Rosen] Add stylechecker rule to ban uses of Class.forName
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of partitions
See https://github.com/aray/e2d/blob/master/EdgePartition2D.ipynb
Author: Andrew Ray <ray.andrew@gmail.com>
Closes #7104 from aray/edge-partition-2d-improvement and squashes the following commits:
3729f84 [Andrew Ray] correct bounds and remove unneeded comments
97f8464 [Andrew Ray] change less
5141ab4 [Andrew Ray] Merge branch 'master' into edge-partition-2d-improvement
925fd2c [Andrew Ray] use new interface for partitioning
001bfd0 [Andrew Ray] Refactor PartitionStrategy so that we can return a prtition function for a given number of parts. To keep compatibility we define default methods that translate between the two implementation options. Made EdgePartition2D use old strategy when we have a perfect square and implement new interface.
5d42105 [Andrew Ray] % -> /
3560084 [Andrew Ray] Merge branch 'master' into edge-partition-2d-improvement
f006364 [Andrew Ray] remove unneeded comments
cfa2c5e [Andrew Ray] Modifications to EdgePartition2D so that it works for non perfect squares.
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Author: Jonathan Alter <jonalter@users.noreply.github.com>
Closes #7093 from jonalter/SPARK-7977 and squashes the following commits:
ccd44cc [Jonathan Alter] Changed println to log in ThreadingSuite
7fcac3e [Jonathan Alter] Reverting to println in ThreadingSuite
10724b6 [Jonathan Alter] Changing some printlns to logs in tests
eeec1e7 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
0b1dcb4 [Jonathan Alter] More println cleanup
aedaf80 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
925fd98 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
0c16fa3 [Jonathan Alter] Replacing some printlns with logs
45c7e05 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
5c8e283 [Jonathan Alter] Allowing println in audit-release examples
5b50da1 [Jonathan Alter] Allowing printlns in example files
ca4b477 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
83ab635 [Jonathan Alter] Fixing new printlns
54b131f [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
1cd8a81 [Jonathan Alter] Removing some unnecessary comments and printlns
b837c3a [Jonathan Alter] Disallowing println
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Author: Patrick Wendell <patrick@databricks.com>
Closes #6328 from pwendell/spark-1.5-update and squashes the following commits:
2f42d02 [Patrick Wendell] A few more excludes
4bebcf0 [Patrick Wendell] Update to RC4
61aaf46 [Patrick Wendell] Using new release candidate
55f1610 [Patrick Wendell] Another exclude
04b4f04 [Patrick Wendell] More issues with transient 1.4 changes
36f549b [Patrick Wendell] [SPARK-7801] [BUILD] Updating versions to SPARK 1.5.0
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Author: Reynold Xin <rxin@databricks.com>
Closes #6536 from rxin/structural-type-checker and squashes the following commits:
f833151 [Reynold Xin] Fixed compilation.
633f9a1 [Reynold Xin] Fixed typo.
d1fa804 [Reynold Xin] [SPARK-7979] Enforce structural type checker.
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Author: Reynold Xin <rxin@databricks.com>
Closes #6530 from rxin/trim-whitespace-1 and squashes the following commits:
7b7b3a0 [Reynold Xin] Reset again.
dc14597 [Reynold Xin] Reset scalastyle.
cd556c4 [Reynold Xin] YARN, Kinesis, Flume.
4223fe1 [Reynold Xin] [SPARK-3850] Trim trailing spaces for examples/streaming.
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Right now `unit-tests.log` are not of much value because we can't tell where the test boundaries are easily. This patch adds log statements before and after each test to outline the test boundaries, e.g.:
```
===== TEST OUTPUT FOR o.a.s.serializer.KryoSerializerSuite: 'kryo with parallelize for primitive arrays' =====
15/05/27 12:36:39.596 pool-1-thread-1-ScalaTest-running-KryoSerializerSuite INFO SparkContext: Starting job: count at KryoSerializerSuite.scala:230
15/05/27 12:36:39.596 dag-scheduler-event-loop INFO DAGScheduler: Got job 3 (count at KryoSerializerSuite.scala:230) with 4 output partitions (allowLocal=false)
15/05/27 12:36:39.596 dag-scheduler-event-loop INFO DAGScheduler: Final stage: ResultStage 3(count at KryoSerializerSuite.scala:230)
15/05/27 12:36:39.596 dag-scheduler-event-loop INFO DAGScheduler: Parents of final stage: List()
15/05/27 12:36:39.597 dag-scheduler-event-loop INFO DAGScheduler: Missing parents: List()
15/05/27 12:36:39.597 dag-scheduler-event-loop INFO DAGScheduler: Submitting ResultStage 3 (ParallelCollectionRDD[5] at parallelize at KryoSerializerSuite.scala:230), which has no missing parents
...
15/05/27 12:36:39.624 pool-1-thread-1-ScalaTest-running-KryoSerializerSuite INFO DAGScheduler: Job 3 finished: count at KryoSerializerSuite.scala:230, took 0.028563 s
15/05/27 12:36:39.625 pool-1-thread-1-ScalaTest-running-KryoSerializerSuite INFO KryoSerializerSuite:
***** FINISHED o.a.s.serializer.KryoSerializerSuite: 'kryo with parallelize for primitive arrays' *****
...
```
Author: Andrew Or <andrew@databricks.com>
Closes #6441 from andrewor14/demarcate-tests and squashes the following commits:
879b060 [Andrew Or] Fix compile after rebase
d622af7 [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
017c8ba [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
7790b6c [Andrew Or] Fix tests after logical merge conflict
c7460c0 [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
c43ffc4 [Andrew Or] Fix tests?
8882581 [Andrew Or] Fix tests
ee22cda [Andrew Or] Fix log message
fa9450e [Andrew Or] Merge branch 'master' of github.com:apache/spark into demarcate-tests
12d1e1b [Andrew Or] Various whitespace changes (minor)
69cbb24 [Andrew Or] Make all test suites extend SparkFunSuite instead of FunSuite
bbce12e [Andrew Or] Fix manual things that cannot be covered through automation
da0b12f [Andrew Or] Add core tests as dependencies in all modules
f7d29ce [Andrew Or] Introduce base abstract class for all test suites
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So we can enable a whitespace enforcement rule in the style checker to save code review time.
Author: Reynold Xin <rxin@databricks.com>
Closes #6474 from rxin/whitespace-graphx and squashes the following commits:
4d3cd26 [Reynold Xin] Fixed tests.
869dde4 [Reynold Xin] [SPARK-7927] whitespace fixes for GraphX.
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Here's a modification to PageRank which does personalized PageRank. The approach is basically similar to that outlined by Bahmani et al. from 2010 (http://arxiv.org/pdf/1006.2880.pdf).
I'm sure this needs tuning up or other considerations, so let me know how I can improve this.
Author: Dan McClary <dan.mcclary@gmail.com>
Author: dwmclary <dan.mcclary@gmail.com>
Closes #4774 from dwmclary/SPARK-5854-Personalized-PageRank and squashes the following commits:
8b907db [dwmclary] fixed scalastyle errors in PageRankSuite
2c20e5d [dwmclary] merged with upstream master
d6cebac [dwmclary] updated as per style requests
7d00c23 [Dan McClary] fixed line overrun in personalizedVertexPageRank
d711677 [Dan McClary] updated vertexProgram to restore binary compatibility for inner method
bb8d507 [Dan McClary] Merge branch 'master' of https://github.com/apache/spark into SPARK-5854-Personalized-PageRank
fba0edd [Dan McClary] fixed silly mistakes
de51be2 [Dan McClary] cleaned up whitespace between comments and methods
0c30d0c [Dan McClary] updated to maintain binary compatibility
aaf0b4b [Dan McClary] Merge branch 'master' of https://github.com/apache/spark into SPARK-5854-Personalized-PageRank
76773f6 [Dan McClary] Merge branch 'master' of https://github.com/apache/spark into SPARK-5854-Personalized-PageRank
44ada8e [Dan McClary] updated tolerance on chain PPR
1ffed95 [Dan McClary] updated tolerance on chain PPR
b67ac69 [Dan McClary] updated tolerance on chain PPR
a560942 [Dan McClary] rolled PPR into pregel code for PageRank
6dc2c29 [Dan McClary] initial implementation of personalized page rank
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Author: Michael Malak <michaelmalak@yahoo.com>
Closes #5464 from michaelmalak/master and squashes the following commits:
9d942ba [Michael Malak] SPARK-6710 GraphX Fixed Wrong initial bias in GraphX SVDPlusPlus
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https://issues.apache.org/jira/browse/SPARK-6758
I am not sure if it is ok to block them in test resources too (as we shade jetty in assembly?).
Author: WangTaoTheTonic <wangtao111@huawei.com>
Closes #5406 from WangTaoTheTonic/SPARK-6758 and squashes the following commits:
e09605b [WangTaoTheTonic] block the right jetty package
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So we can turn style checker on for test code.
Author: Reynold Xin <rxin@databricks.com>
Closes #5410 from rxin/test-style-graphx and squashes the following commits:
89e253a [Reynold Xin] [SPARK-6765] Fix test code style for graphx.
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Example of Graph#aggregateMessages has error.
Since aggregateMessages is a method of Graph, It should be written "rawGraph.aggregateMessages"
Author: Sasaki Toru <sasakitoa@nttdata.co.jp>
Closes #5388 from sasakitoa/aggregateMessagesExample and squashes the following commits:
b1d631b [Sasaki Toru] Example of Graph#aggregateMessages has error
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This builds on my earlier pull requests and turns on the explicit type checking in scalastyle.
Author: Reynold Xin <rxin@databricks.com>
Closes #5342 from rxin/SPARK-6428 and squashes the following commits:
7b531ab [Reynold Xin] import ordering
2d9a8a5 [Reynold Xin] jl
e668b1c [Reynold Xin] override
9b9e119 [Reynold Xin] Parenthesis.
82e0cf5 [Reynold Xin] [SPARK-6428] Turn on explicit type checking for public methods.
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Adds a `Graph#minus` method which will return only unique `VertexId`'s from the calling `VertexRDD`.
To demonstrate a basic example with pseudocode:
```
Set((0L,0),(1L,1)).minus(Set((1L,1),(2L,2)))
> Set((0L,0))
```
Author: Brennon York <brennon.york@capitalone.com>
Closes #5175 from brennonyork/SPARK-6510 and squashes the following commits:
248d5c8 [Brennon York] added minus(VertexRDD[VD]) method to avoid createUsingIndex and updated the mask operations to simplify with andNot call
3fb7cce [Brennon York] updated graphx doc to reflect the addition of minus method
6575d92 [Brennon York] updated mima exclude
aaa030b [Brennon York] completed graph#minus functionality
7227c0f [Brennon York] beginning work on minus functionality
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Correct some typos. Correct a mistake in lib/PageRank.scala. The first PageRank implementation uses standalone Graph interface, but the second uses Pregel interface. It may mislead the code viewers.
Author: Hangchen Yu <yuhc@gitcafe.com>
Closes #5128 from yuhc/master and squashes the following commits:
53e5432 [Hangchen Yu] Merge branch 'master' of https://github.com/yuhc/spark
67b77b5 [Hangchen Yu] [SPARK-6455] [docs] Correct some mistakes and typos
206f2dc [Hangchen Yu] Correct some mistakes and typos.
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