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* [SPARK-2410][SQL] Merging Hive Thrift/JDBC serverCheng Lian2014-07-271-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (This is a replacement of #1399, trying to fix potential `HiveThriftServer2` port collision between parallel builds. Please refer to [these comments](https://github.com/apache/spark/pull/1399#issuecomment-50212572) for details.) JIRA issue: [SPARK-2410](https://issues.apache.org/jira/browse/SPARK-2410) Merging the Hive Thrift/JDBC server from [branch-1.0-jdbc](https://github.com/apache/spark/tree/branch-1.0-jdbc). Thanks chenghao-intel for his initial contribution of the Spark SQL CLI. Author: Cheng Lian <lian.cs.zju@gmail.com> Closes #1600 from liancheng/jdbc and squashes the following commits: ac4618b [Cheng Lian] Uses random port for HiveThriftServer2 to avoid collision with parallel builds 090beea [Cheng Lian] Revert changes related to SPARK-2678, decided to move them to another PR 21c6cf4 [Cheng Lian] Updated Spark SQL programming guide docs fe0af31 [Cheng Lian] Reordered spark-submit options in spark-shell[.cmd] 199e3fb [Cheng Lian] Disabled MIMA for hive-thriftserver 1083e9d [Cheng Lian] Fixed failed test suites 7db82a1 [Cheng Lian] Fixed spark-submit application options handling logic 9cc0f06 [Cheng Lian] Starts beeline with spark-submit cfcf461 [Cheng Lian] Updated documents and build scripts for the newly added hive-thriftserver profile 061880f [Cheng Lian] Addressed all comments by @pwendell 7755062 [Cheng Lian] Adapts test suites to spark-submit settings 40bafef [Cheng Lian] Fixed more license header issues e214aab [Cheng Lian] Added missing license headers b8905ba [Cheng Lian] Fixed minor issues in spark-sql and start-thriftserver.sh f975d22 [Cheng Lian] Updated docs for Hive compatibility and Shark migration guide draft 3ad4e75 [Cheng Lian] Starts spark-sql shell with spark-submit a5310d1 [Cheng Lian] Make HiveThriftServer2 play well with spark-submit 61f39f4 [Cheng Lian] Starts Hive Thrift server via spark-submit 2c4c539 [Cheng Lian] Cherry picked the Hive Thrift server
* Revert "[SPARK-2410][SQL] Merging Hive Thrift/JDBC server"Michael Armbrust2014-07-251-1/+1
| | | | | | | | | | | | This reverts commit 06dc0d2c6b69c5d59b4d194ced2ac85bfe2e05e2. #1399 is making Jenkins fail. We should investigate and put this back after its passing tests. Author: Michael Armbrust <michael@databricks.com> Closes #1594 from marmbrus/revertJDBC and squashes the following commits: 59748da [Michael Armbrust] Revert "[SPARK-2410][SQL] Merging Hive Thrift/JDBC server"
* [SPARK-2410][SQL] Merging Hive Thrift/JDBC serverCheng Lian2014-07-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | JIRA issue: - Main: [SPARK-2410](https://issues.apache.org/jira/browse/SPARK-2410) - Related: [SPARK-2678](https://issues.apache.org/jira/browse/SPARK-2678) Cherry picked the Hive Thrift/JDBC server from [branch-1.0-jdbc](https://github.com/apache/spark/tree/branch-1.0-jdbc). (Thanks chenghao-intel for his initial contribution of the Spark SQL CLI.) TODO - [x] Use `spark-submit` to launch the server, the CLI and beeline - [x] Migration guideline draft for Shark users ---- Hit by a bug in `SparkSubmitArguments` while working on this PR: all application options that are recognized by `SparkSubmitArguments` are stolen as `SparkSubmit` options. For example: ```bash $ spark-submit --class org.apache.hive.beeline.BeeLine spark-internal --help ``` This actually shows usage information of `SparkSubmit` rather than `BeeLine`. ~~Fixed this bug here since the `spark-internal` related stuff also touches `SparkSubmitArguments` and I'd like to avoid conflict.~~ **UPDATE** The bug mentioned above is now tracked by [SPARK-2678](https://issues.apache.org/jira/browse/SPARK-2678). Decided to revert changes to this bug since it involves more subtle considerations and worth a separate PR. Author: Cheng Lian <lian.cs.zju@gmail.com> Closes #1399 from liancheng/thriftserver and squashes the following commits: 090beea [Cheng Lian] Revert changes related to SPARK-2678, decided to move them to another PR 21c6cf4 [Cheng Lian] Updated Spark SQL programming guide docs fe0af31 [Cheng Lian] Reordered spark-submit options in spark-shell[.cmd] 199e3fb [Cheng Lian] Disabled MIMA for hive-thriftserver 1083e9d [Cheng Lian] Fixed failed test suites 7db82a1 [Cheng Lian] Fixed spark-submit application options handling logic 9cc0f06 [Cheng Lian] Starts beeline with spark-submit cfcf461 [Cheng Lian] Updated documents and build scripts for the newly added hive-thriftserver profile 061880f [Cheng Lian] Addressed all comments by @pwendell 7755062 [Cheng Lian] Adapts test suites to spark-submit settings 40bafef [Cheng Lian] Fixed more license header issues e214aab [Cheng Lian] Added missing license headers b8905ba [Cheng Lian] Fixed minor issues in spark-sql and start-thriftserver.sh f975d22 [Cheng Lian] Updated docs for Hive compatibility and Shark migration guide draft 3ad4e75 [Cheng Lian] Starts spark-sql shell with spark-submit a5310d1 [Cheng Lian] Make HiveThriftServer2 play well with spark-submit 61f39f4 [Cheng Lian] Starts Hive Thrift server via spark-submit 2c4c539 [Cheng Lian] Cherry picked the Hive Thrift server
* [SPARK-2358][MLLIB] Add an option to include native BLAS/LAPACK loader in ↵Xiangrui Meng2014-07-101-0/+13
| | | | | | | | | | | | the build It would be easy for users to include the netlib-java jniloader in the spark jar, which is LGPL-licensed. We can follow the same approach as ganglia support in Spark, which could be enabled by turning on "-Pganglia-lgpl" at build time. We can use "-Pnetlib-lgpl" flag for this. Author: Xiangrui Meng <meng@databricks.com> Closes #1295 from mengxr/netlib-lgpl and squashes the following commits: aebf001 [Xiangrui Meng] add a profile to optionally include native BLAS/LAPACK loader in mllib
* [SPARK-1776] Have Spark's SBT build read dependencies from Maven.Prashant Sharma2014-07-101-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Patch introduces the new way of working also retaining the existing ways of doing things. For example build instruction for yarn in maven is `mvn -Pyarn -PHadoop2.2 clean package -DskipTests` in sbt it can become `MAVEN_PROFILES="yarn, hadoop-2.2" sbt/sbt clean assembly` Also supports `sbt/sbt -Pyarn -Phadoop-2.2 -Dhadoop.version=2.2.0 clean assembly` Author: Prashant Sharma <prashant.s@imaginea.com> Author: Patrick Wendell <pwendell@gmail.com> Closes #772 from ScrapCodes/sbt-maven and squashes the following commits: a8ac951 [Prashant Sharma] Updated sbt version. 62b09bb [Prashant Sharma] Improvements. fa6221d [Prashant Sharma] Excluding sql from mima 4b8875e [Prashant Sharma] Sbt assembly no longer builds tools by default. 72651ca [Prashant Sharma] Addresses code reivew comments. acab73d [Prashant Sharma] Revert "Small fix to run-examples script." ac4312c [Prashant Sharma] Revert "minor fix" 6af91ac [Prashant Sharma] Ported oldDeps back. + fixes issues with prev commit. 65cf06c [Prashant Sharma] Servelet API jars mess up with the other servlet jars on the class path. 446768e [Prashant Sharma] minor fix 89b9777 [Prashant Sharma] Merge conflicts d0a02f2 [Prashant Sharma] Bumped up pom versions, Since the build now depends on pom it is better updated there. + general cleanups. dccc8ac [Prashant Sharma] updated mima to check against 1.0 a49c61b [Prashant Sharma] Fix for tools jar a2f5ae1 [Prashant Sharma] Fixes a bug in dependencies. cf88758 [Prashant Sharma] cleanup 9439ea3 [Prashant Sharma] Small fix to run-examples script. 96cea1f [Prashant Sharma] SPARK-1776 Have Spark's SBT build read dependencies from Maven. 36efa62 [Patrick Wendell] Set project name in pom files and added eclipse/intellij plugins. 4973dbd [Patrick Wendell] Example build using pom reader.
* [SPARK-2172] PySpark cannot import mllib modules in YARN-client modeSzul, Piotr2014-06-251-0/+8
| | | | | | | | | | | | | | | Include pyspark/mllib python sources as resources in the mllib.jar. This way they will be included in the final assembly Author: Szul, Piotr <Piotr.Szul@csiro.au> Closes #1223 from piotrszul/branch-1.0 and squashes the following commits: 69d5174 [Szul, Piotr] Removed unsed resource directory src/main/resource from mllib pom f8c52a0 [Szul, Piotr] [SPARK-2172] PySpark cannot import mllib modules in YARN-client mode Include pyspark/mllib python sources as resources in the jar (cherry picked from commit fa167194ce1b5898e4d7232346c9f86b2897a722) Signed-off-by: Reynold Xin <rxin@apache.org>
* Remove compile-scoped junit dependency.Marcelo Vanzin2014-06-051-0/+8
| | | | | | | | | | | | | This avoids having junit classes showing up in the assembly jar. I verified that only test classes in the jtransforms package use junit. Author: Marcelo Vanzin <vanzin@cloudera.com> Closes #794 from vanzin/junit-dep-exclusion and squashes the following commits: 274e1c2 [Marcelo Vanzin] Remove junit from assembly in sbt build also. ad950be [Marcelo Vanzin] Remove compile-scoped junit dependency.
* [SPARK-2029] Bump pom.xml version number of master branch to 1.1.0-SNAPSHOT.Takuya UESHIN2014-06-051-1/+1
| | | | | | | | Author: Takuya UESHIN <ueshin@happy-camper.st> Closes #974 from ueshin/issues/SPARK-2029 and squashes the following commits: e19e8f4 [Takuya UESHIN] Bump version number to 1.1.0-SNAPSHOT.
* Improved build configurationwitgo2014-04-281-14/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1, Fix SPARK-1441: compile spark core error with hadoop 0.23.x 2, Fix SPARK-1491: maven hadoop-provided profile fails to build 3, Fix org.scala-lang: * ,org.apache.avro:* inconsistent versions dependency 4, A modified on the sql/catalyst/pom.xml,sql/hive/pom.xml,sql/core/pom.xml (Four spaces formatted into two spaces) Author: witgo <witgo@qq.com> Closes #480 from witgo/format_pom and squashes the following commits: 03f652f [witgo] review commit b452680 [witgo] Merge branch 'master' of https://github.com/apache/spark into format_pom bee920d [witgo] revert fix SPARK-1629: Spark Core missing commons-lang dependence 7382a07 [witgo] Merge branch 'master' of https://github.com/apache/spark into format_pom 6902c91 [witgo] fix SPARK-1629: Spark Core missing commons-lang dependence 0da4bc3 [witgo] merge master d1718ed [witgo] Merge branch 'master' of https://github.com/apache/spark into format_pom e345919 [witgo] add avro dependency to yarn-alpha 77fad08 [witgo] Merge branch 'master' of https://github.com/apache/spark into format_pom 62d0862 [witgo] Fix org.scala-lang: * inconsistent versions dependency 1a162d7 [witgo] Merge branch 'master' of https://github.com/apache/spark into format_pom 934f24d [witgo] review commit cf46edc [witgo] exclude jruby 06e7328 [witgo] Merge branch 'SparkBuild' into format_pom 99464d2 [witgo] fix maven hadoop-provided profile fails to build 0c6c1fc [witgo] Fix compile spark core error with hadoop 0.23.x 6851bec [witgo] Maintain consistent SparkBuild.scala, pom.xml
* SPARK-1387. Update build plugins, avoid plugin version warning, centralize ↵Sean Owen2014-04-061-1/+1
| | | | | | | | | | | | | | | | | | | | versions Another handful of small build changes to organize and standardize a bit, and avoid warnings: - Update Maven plugin versions for good measure - Since plugins need maven 3.0.4 already, require it explicitly (<3.0.4 had some bugs anyway) - Use variables to define versions across dependencies where they should move in lock step - ... and make this consistent between Maven/SBT OK, I also updated the JIRA URL while I was at it here. Author: Sean Owen <sowen@cloudera.com> Closes #291 from srowen/SPARK-1387 and squashes the following commits: 461eca1 [Sean Owen] Couldn't resist also updating JIRA location to new one c2d5cc5 [Sean Owen] Update plugins and Maven version; use variables consistently across Maven/SBT to define dependency versions that should stay in step.
* [SPARK-1212] Adding sparse data support and update KMeansXiangrui Meng2014-03-231-0/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Continue our discussions from https://github.com/apache/incubator-spark/pull/575 This PR is WIP because it depends on a SNAPSHOT version of breeze. Per previous discussions and benchmarks, I switched to breeze for linear algebra operations. @dlwh and I made some improvements to breeze to keep its performance comparable to the bare-bone implementation, including norm computation and squared distance. This is why this PR needs to depend on a SNAPSHOT version of breeze. @fommil , please find the notice of using netlib-core in `NOTICE`. This is following Apache's instructions on appropriate labeling. I'm going to update this PR to include: 1. Fast distance computation: using `\|a\|_2^2 + \|b\|_2^2 - 2 a^T b` when it doesn't introduce too much numerical error. The squared norms are pre-computed. Otherwise, computing the distance between the center (dense) and a point (possibly sparse) always takes O(n) time. 2. Some numbers about the performance. 3. A released version of breeze. @dlwh, a minor release of breeze will help this PR get merged early. Do you mind sharing breeze's release plan? Thanks! Author: Xiangrui Meng <meng@databricks.com> Closes #117 from mengxr/sparse-kmeans and squashes the following commits: 67b368d [Xiangrui Meng] fix SparseVector.toArray 5eda0de [Xiangrui Meng] update NOTICE 67abe31 [Xiangrui Meng] move ArrayRDDs to mllib.rdd 1da1033 [Xiangrui Meng] remove dependency on commons-math3 and compute EPSILON directly 9bb1b31 [Xiangrui Meng] optimize SparseVector.toArray 226d2cd [Xiangrui Meng] update Java friendly methods in Vectors 238ba34 [Xiangrui Meng] add VectorRDDs with a converter from RDD[Array[Double]] b28ba2f [Xiangrui Meng] add toArray to Vector e69b10c [Xiangrui Meng] remove examples/JavaKMeans.java, which is replaced by mllib/examples/JavaKMeans.java 72bde33 [Xiangrui Meng] clean up code for distance computation 712cb88 [Xiangrui Meng] make Vectors.sparse Java friendly 27858e4 [Xiangrui Meng] update breeze version to 0.7 07c3cf2 [Xiangrui Meng] change Mahout to breeze in doc use a simple lower bound to avoid unnecessary distance computation 6f5cdde [Xiangrui Meng] fix a bug in filtering finished runs 42512f2 [Xiangrui Meng] Merge branch 'master' into sparse-kmeans d6e6c07 [Xiangrui Meng] add predict(RDD[Vector]) to KMeansModel 42b4e50 [Xiangrui Meng] line feed at the end a4ace73 [Xiangrui Meng] Merge branch 'fast-dist' into sparse-kmeans 3ed1a24 [Xiangrui Meng] add doc to BreezeVectorWithSquaredNorm 0107e19 [Xiangrui Meng] update NOTICE 87bc755 [Xiangrui Meng] tuned the KMeans code: changed some for loops to while, use view to avoid copying arrays 0ff8046 [Xiangrui Meng] update KMeans to use fastSquaredDistance f355411 [Xiangrui Meng] add BreezeVectorWithSquaredNorm case class ab74f67 [Xiangrui Meng] add fastSquaredDistance for KMeans 4e7d5ca [Xiangrui Meng] minor style update 07ffaf2 [Xiangrui Meng] add dense/sparse vector data models and conversions to/from breeze vectors use breeze to implement KMeans in order to support both dense and sparse data
* SPARK-1193. Fix indentation in pom.xmlsSandy Ryza2014-03-071-4/+4
| | | | | | | | Author: Sandy Ryza <sandy@cloudera.com> Closes #91 from sryza/sandy-spark-1193 and squashes the following commits: a878124 [Sandy Ryza] SPARK-1193. Fix indentation in pom.xmls
* SPARK-1121: Include avro for yarn-alpha buildsPatrick Wendell2014-03-021-0/+14
| | | | | | | | | | | | | | | | | This lets us explicitly include Avro based on a profile for 0.23.X builds. It makes me sad how convoluted it is to express this logic in Maven. @tgraves and @sryza curious if this works for you. I'm also considering just reverting to how it was before. The only real problem was that Spark advertised a dependency on Avro even though it only really depends transitively on Avro through other deps. Author: Patrick Wendell <pwendell@gmail.com> Closes #49 from pwendell/avro-build-fix and squashes the following commits: 8d6ee92 [Patrick Wendell] SPARK-1121: Add avro to yarn-alpha profile
* Remove remaining references to incubationPatrick Wendell2014-03-021-2/+2
| | | | | | | | | | This removes some loose ends not caught by the other (incubating -> tlp) patches. @markhamstra this updates the version as you mentioned earlier. Author: Patrick Wendell <pwendell@gmail.com> Closes #51 from pwendell/tlp and squashes the following commits: d553b1b [Patrick Wendell] Remove remaining references to incubation
* Merge pull request #542 from markhamstra/versionBump. Closes #542.Mark Hamstra2014-02-081-1/+1
| | | | | | | | | | | | | | | | | | Version number to 1.0.0-SNAPSHOT Since 0.9.0-incubating is done and out the door, we shouldn't be building 0.9.0-incubating-SNAPSHOT anymore. @pwendell Author: Mark Hamstra <markhamstra@gmail.com> == Merge branch commits == commit 1b00a8a7c1a7f251b4bb3774b84b9e64758eaa71 Author: Mark Hamstra <markhamstra@gmail.com> Date: Wed Feb 5 09:30:32 2014 -0800 Version number to 1.0.0-SNAPSHOT
* Use scala.binary.version in POMsMark Hamstra2013-12-151-5/+5
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* Style fixes and addressed review comments at #221Prashant Sharma2013-12-101-5/+5
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* Incorporated Patrick's feedback comment on #211 and made maven ↵Prashant Sharma2013-12-071-1/+1
| | | | build/dep-resolution atleast a bit faster.
* Merge branch 'master' into wip-merge-masterPrashant Sharma2013-10-081-4/+4
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: bagel/pom.xml core/pom.xml core/src/test/scala/org/apache/spark/ui/UISuite.scala examples/pom.xml mllib/pom.xml pom.xml project/SparkBuild.scala repl/pom.xml streaming/pom.xml tools/pom.xml In scala 2.10, a shorter representation is used for naming artifacts so changed to shorter scala version for artifacts and made it a property in pom.
| * Merging build changes in from 0.8Patrick Wendell2013-10-051-4/+4
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* | Merge branch 'master' into scala-2.10Prashant Sharma2013-10-011-1/+1
|\| | | | | | | | | | | | | | | Conflicts: core/src/main/scala/org/apache/spark/ui/jobs/JobProgressUI.scala docs/_config.yml project/SparkBuild.scala repl/src/main/scala/org/apache/spark/repl/SparkILoop.scala
| * Update build version in masterPatrick Wendell2013-09-241-1/+1
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* | fixed maven build for scala 2.10Prashant Sharma2013-09-261-4/+4
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* Fix some URLsMatei Zaharia2013-09-011-1/+1
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* Initial work to rename package to org.apache.sparkMatei Zaharia2013-09-011-3/+3
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* Remove redundant dependencies from POMsJey Kottalam2013-08-181-4/+0
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* Maven build now also works with YARNJey Kottalam2013-08-161-40/+0
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* Don't mark hadoop-client as 'provided'Jey Kottalam2013-08-161-1/+0
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* Maven build now works with CDH hadoop-2.0.0-mr1Jey Kottalam2013-08-161-27/+0
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* Initial changes to make Maven build agnostic of hadoop versionJey Kottalam2013-08-161-33/+10
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* Java examples, tests for KMeans and ALSShivaram Venkataraman2013-08-061-0/+5
| | | | | | | | | | | | | | | - Changes ALS to accept RDD[Rating] instead of (Int, Int, Double) making it easier to call from Java - Renames class methods from `train` to `run` to enable static methods to be called from Java. - Add unit tests which check if both static / class methods can be called. - Also add examples which port the main() function in ALS, KMeans to the examples project. Couple of minor changes to existing code: - Add a toJavaRDD method in RDD to convert scala RDD to java RDD easily - Workaround a bug where using double[] from Java leads to class cast exception in KMeans init
* Add bagel, mllib to SBT assembly.Shivaram Venkataraman2013-07-301-0/+165
Also add jblas dependency to mllib pom.xml
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