diff options
Diffstat (limited to 'beliefs/factors')
-rw-r--r-- | beliefs/factors/__init__.py | 0 | ||||
-rw-r--r-- | beliefs/factors/bernoulli_or_cpd.py | 42 | ||||
-rw-r--r-- | beliefs/factors/cpd.py | 45 |
3 files changed, 87 insertions, 0 deletions
diff --git a/beliefs/factors/__init__.py b/beliefs/factors/__init__.py new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/beliefs/factors/__init__.py diff --git a/beliefs/factors/bernoulli_or_cpd.py b/beliefs/factors/bernoulli_or_cpd.py new file mode 100644 index 0000000..bfb3a95 --- /dev/null +++ b/beliefs/factors/bernoulli_or_cpd.py @@ -0,0 +1,42 @@ +import numpy as np + +from beliefs.factors.cpd import TabularCPD + + +class BernoulliOrCPD(TabularCPD): + """CPD class for a Bernoulli random variable whose relationship to its + parents (also Bernoulli random variables) is described by OR logic. + + If at least one of the variable's parents is True, then the variable + is True, and False otherwise. + """ + def __init__(self, variable, parents=[]): + """ + Args: + variable: int or string + parents: optional, list of int and/or strings + """ + super().__init__(variable=variable, + variable_card=2, + parents=parents, + parents_card=[2]*len(parents), + values=[]) + self._values = [] + + @property + def values(self): + if not any(self._values): + self._values = self._build_kwise_values_array(len(self.variables)) + self._values = self._values.reshape(self.cardinality) + return self._values + + @staticmethod + def _build_kwise_values_array(k): + # special case a completely independent factor, and + # return the uniform prior + if k == 1: + return np.array([0.5, 0.5]) + + return np.array( + [1.,] + [0.]*(2**(k-1)-1) + [0.,] + [1.]*(2**(k-1)-1) + ) diff --git a/beliefs/factors/cpd.py b/beliefs/factors/cpd.py new file mode 100644 index 0000000..a286aaa --- /dev/null +++ b/beliefs/factors/cpd.py @@ -0,0 +1,45 @@ +import numpy as np + + +class TabularCPD: + """ + Defines the conditional probability table for a discrete variable + whose parents are also discrete. + + TODO: have this inherit from DiscreteFactor implementing explicit factor methods + """ + def __init__(self, variable, variable_card, + parents=[], parents_card=[], values=[]): + """ + Args: + variable: int or string + variable_card: int + parents: optional, list of int and/or strings + parents_card: optional, list of int + values: optional, 2d list or array + """ + self.variable = variable + self.parents = parents + self.variables = [variable] + parents + self.cardinality = [variable_card] + parents_card + self._values = np.array(values) + + @property + def values(self): + return self._values + + def get_values(self): + """ + Returns the tabular cpd form of the values. + """ + if len(self.cardinality) == 1: + return self.values.reshape(1, np.prod(self.cardinality)) + else: + return self.values.reshape(self.cardinality[0], np.prod(self.cardinality[1:])) + + def copy(self): + return self.__class__(self.variable, + self.cardinality[0], + self.parents, + self.cardinality[1:], + self._values) |