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authorJakob Odersky <jakob@driver.xyz>2017-11-27 21:49:32 -0800
committerJakob Odersky <jakob@driver.xyz>2017-11-27 21:50:56 -0800
commit4a657a974815a5e6de56808d818efc84164c3956 (patch)
treebf2a82ae1cdfd4a92fb072a2dfe8fb0d6bcddf94 /src
parent3f0aff9110ba1708b46dd916b196a4a7c25f9466 (diff)
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Revert 'Add formats for patient eligible trials'
Diffstat (limited to 'src')
-rw-r--r--src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala2
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/formats/json/patienteligibletrial.scala21
-rw-r--r--src/main/scala/xyz/driver/pdsuidomain/services/rest/RestPatientEligibleTrialService.scala84
-rw-r--r--src/test/scala/xyz/driver/pdsuidomain/formats/json/PatientEligibleTrialFormatSuite.scala12
4 files changed, 18 insertions, 101 deletions
diff --git a/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala b/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala
index 62c9690..f617a20 100644
--- a/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala
+++ b/src/main/scala/xyz/driver/pdsuicommon/utils/CustomSwaggerJsonFormats.scala
@@ -197,7 +197,7 @@ object CustomSwaggerJsonFormats {
classOf[RichPatientCriterion] -> richPatientCriterionFormat.write(nextRichPatientCriterion()),
classOf[DraftPatientCriterion] -> draftPatientCriterionFormat.write(nextDraftPatientCriterion()),
classOf[PatientLabelEvidenceView] -> patientLabelEvidenceWriter.write(nextPatientLabelEvidenceView()),
- classOf[RichPatientEligibleTrial] -> patientEligibleTrialFormat.write(nextRichPatientEligibleTrial()),
+ classOf[RichPatientEligibleTrial] -> patientEligibleTrialWriter.write(nextRichPatientEligibleTrial()),
classOf[PatientHypothesis] -> patientHypothesisWriter.write(nextPatientHypothesis()),
classOf[PatientHistory] -> patientHistoryFormat.write(nextPatientHistory()),
classOf[PatientIssue] -> patientIssueWriter.write(nextPatientIssue()),
diff --git a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patienteligibletrial.scala b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patienteligibletrial.scala
index 11253fc..4c006f9 100644
--- a/src/main/scala/xyz/driver/pdsuidomain/formats/json/patienteligibletrial.scala
+++ b/src/main/scala/xyz/driver/pdsuidomain/formats/json/patienteligibletrial.scala
@@ -8,8 +8,6 @@ import xyz.driver.pdsuidomain.services.PatientEligibleTrialService.RichPatientEl
object patienteligibletrial {
import DefaultJsonProtocol._
import common._
- import xyz.driver.pdsuidomain.formats.json.trial._
- import xyz.driver.pdsuidomain.formats.json.patientcriterion._
def applyUpdateToTrialArmGroup(json: JsValue, orig: PatientTrialArmGroupView): PatientTrialArmGroupView =
json match {
@@ -24,10 +22,19 @@ object patienteligibletrial {
case _ => deserializationError(s"Expected Json Object as partial PatientTrialArmGroupView, but got $json")
}
- implicit val patientEligibleArmGroupView: RootJsonFormat[PatientTrialArmGroupView] =
- jsonFormat7(PatientTrialArmGroupView.apply)
-
- implicit val patientEligibleTrialFormat: RootJsonFormat[RichPatientEligibleTrial] =
- jsonFormat3(RichPatientEligibleTrial.apply)
+ implicit val patientEligibleTrialWriter: RootJsonWriter[RichPatientEligibleTrial] =
+ new RootJsonWriter[RichPatientEligibleTrial] {
+ override def write(obj: RichPatientEligibleTrial) =
+ JsObject(
+ "id" -> obj.group.id.toJson,
+ "patientId" -> obj.group.patientId.toJson,
+ "trialId" -> obj.group.trialId.toJson,
+ "trialTitle" -> obj.trial.title.toJson,
+ "arms" -> obj.arms.map(_.armName).toJson,
+ "hypothesisId" -> obj.trial.hypothesisId.toJson,
+ "verifiedEligibilityStatus" -> obj.group.verifiedEligibilityStatus.toJson,
+ "isVerified" -> obj.group.isVerified.toJson
+ )
+ }
}
diff --git a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestPatientEligibleTrialService.scala b/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestPatientEligibleTrialService.scala
deleted file mode 100644
index 210e7c1..0000000
--- a/src/main/scala/xyz/driver/pdsuidomain/services/rest/RestPatientEligibleTrialService.scala
+++ /dev/null
@@ -1,84 +0,0 @@
-package xyz.driver.pdsuidomain.services.rest
-
-import akka.http.scaladsl.marshalling.Marshal
-import akka.http.scaladsl.model._
-import akka.stream.Materializer
-import xyz.driver.core.rest.{Pagination => _, _}
-import xyz.driver.entities.users.AuthUserInfo
-import xyz.driver.pdsuicommon.db._
-import xyz.driver.pdsuicommon.domain._
-import xyz.driver.pdsuidomain.ListResponse
-import xyz.driver.pdsuidomain.entities._
-import xyz.driver.pdsuidomain.services.PatientCriterionService.RichPatientCriterion
-import xyz.driver.pdsuidomain.services.PatientEligibleTrialService
-
-import scala.concurrent.{ExecutionContext, Future}
-
-class RestPatientEligibleTrialService(transport: ServiceTransport, baseUri: Uri)(
- implicit protected val materializer: Materializer,
- protected val exec: ExecutionContext)
- extends PatientEligibleTrialService with RestHelper {
-
- import PatientEligibleTrialService._
- import akka.http.scaladsl.marshallers.sprayjson.SprayJsonSupport._
- import xyz.driver.pdsuidomain.formats.json.listresponse._
- import xyz.driver.pdsuidomain.formats.json.patientcriterion._
- import xyz.driver.pdsuidomain.formats.json.patienteligibletrial._
-
- def getAll(patientId: UuidId[Patient],
- filter: SearchFilterExpr = SearchFilterExpr.Empty,
- sorting: Option[Sorting] = None,
- pagination: Option[Pagination] = None)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetListReply] = {
- val request = HttpRequest(HttpMethods.GET,
- endpointUri(baseUri,
- s"/v1/patient/$patientId/trial",
- filterQuery(filter) ++ sortingQuery(sorting) ++ paginationQuery(pagination)))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[ListResponse[RichPatientEligibleTrial]](response)
- } yield {
- GetListReply.EntityList(reply.items, reply.meta.itemsCount)
- }
- }
-
-
- def getById(patientId: UuidId[Patient], id: LongId[PatientTrialArmGroup])(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetByIdReply] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/patient/$patientId/trial/$id"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[RichPatientEligibleTrial](response)
- } yield {
- GetByIdReply.Entity(reply)
- }
- }
-
- def getCriterionListByGroupId(patientId: UuidId[Patient], id: LongId[PatientTrialArmGroup])(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[GetCriterionListOfGroupReply] = {
- val request = HttpRequest(HttpMethods.GET, endpointUri(baseUri, s"/v1/patient/$patientId/trial/$id/criterion"))
- for {
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[ListResponse[RichPatientCriterion]](response)
- } yield {
- GetCriterionListOfGroupReply.EntityList(reply.items, reply.meta.itemsCount)
- }
- }
-
- def update(origEligibleTrialWithTrial: RichPatientEligibleTrial,
- draftPatientTrialArmGroup: PatientTrialArmGroupView)(
- implicit requestContext: AuthorizedServiceRequestContext[AuthUserInfo]): Future[UpdateReply] = {
- for {
- entity <- Marshal(draftPatientTrialArmGroup).to[RequestEntity]
- request = HttpRequest(
- HttpMethods.PATCH,
- endpointUri(baseUri, s"/v1/patient/${origEligibleTrialWithTrial.group.patientId}/trial/${origEligibleTrialWithTrial.trial.id}"))
- .withEntity(entity)
- response <- transport.sendRequestGetResponse(requestContext)(request)
- reply <- apiResponse[RichPatientEligibleTrial](response)
- } yield {
- UpdateReply.Updated(reply)
- }
- }
-
-}
diff --git a/src/test/scala/xyz/driver/pdsuidomain/formats/json/PatientEligibleTrialFormatSuite.scala b/src/test/scala/xyz/driver/pdsuidomain/formats/json/PatientEligibleTrialFormatSuite.scala
index 0a83c62..faef0f6 100644
--- a/src/test/scala/xyz/driver/pdsuidomain/formats/json/PatientEligibleTrialFormatSuite.scala
+++ b/src/test/scala/xyz/driver/pdsuidomain/formats/json/PatientEligibleTrialFormatSuite.scala
@@ -47,17 +47,11 @@ class PatientEligibleTrialFormatSuite extends FlatSpec with Matchers {
PatientCriterionArm(patientCriterionId = LongId(1), armId = LongId(32), armName = "arm 32")
)
val orig = RichPatientEligibleTrial(trial, group, arms)
- val writtenJson = patientEligibleTrialFormat.write(orig)
+ val writtenJson = patientEligibleTrialWriter.write(orig)
writtenJson should be(
- """{"trial":{"isPartner":false,"assignee":null,"lastUpdate":"2017-08-10T18:16:19Z","previousStatus":null,
- "isUpdated":false,"overviewTemplate":"","phase":"","originalStudyDesignId":null,
- "hypothesisId":"e76e2fc4-a29c-44fb-a81b-8856d06bb1d4","originalTitle":"orig trial title","studyDesignId":321,
- "lastActiveUser":null,"externalid":"40892a07-c638-49d2-9795-1edfefbbcc7c","id":"NCT000001","status":"Done",
- "overview":null,"previousAssignee":null,"title":"trial title"},"group":{"isVerified":false
- ,"patientId":"748b5884-3528-4cb9-904b-7a8151d6e343","hypothesisId":"e76e2fc4-a29c-44fb-a81b-8856d06bb1d4",
- "verifiedEligibilityStatus":"Yes","trialId":"NCT000001","eligibilityStatus":"Yes","id":1},
- "arms":[{"patientCriterionId":1,"armId":31,"armName":"arm 31"},{"patientCriterionId":1,"armId":32,"armName":"arm 32"}]}""".parseJson)
+ """{"id":1,"patientId":"748b5884-3528-4cb9-904b-7a8151d6e343","trialId":"NCT000001","trialTitle":"trial title",
+ "hypothesisId":"e76e2fc4-a29c-44fb-a81b-8856d06bb1d4","verifiedEligibilityStatus":"Yes","isVerified":false,"arms":["arm 31","arm 32"]}""".parseJson)
val updatePatientEligibleTrialJson = """{"isVerified":true}""".parseJson
val expectedUpdatedPatientTrialArmGroup = group.copy(isVerified = true)