1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
|
package xyz.driver.pdsuidomain.entities
import xyz.driver.pdsuicommon.domain.{LongId, StringId}
import xyz.driver.pdsuicommon.logging._
import xyz.driver.pdsuidomain.entities.InterventionType.DeliveryMethod
import xyz.driver.pdsuidomain.entities.InterventionType.DeliveryMethod._
import scalaz.syntax.equal._
import scalaz.Scalaz.stringInstance
sealed trait InterventionType {
val id: LongId[InterventionType]
val name: String
val deliveryMethods: Set[DeliveryMethod]
}
object InterventionType {
final case object Chemotherapy extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](2)
val name: String = "Chemotherapy"
val deliveryMethods: Set[DeliveryMethod] = commonMethods
}
final case object TargetedTherapy extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](3)
val name: String = "Targeted therapy"
val deliveryMethods: Set[DeliveryMethod] = commonMethods
}
final case object Immunotherapy extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](4)
val name: String = "Immunotherapy"
val deliveryMethods: Set[DeliveryMethod] = commonMethods
}
final case object HormoneTherapy extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](6)
val name: String = "Hormone therapy"
val deliveryMethods: Set[DeliveryMethod] = commonMethods
}
final case object Other extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](7)
val name: String = "Other"
val deliveryMethods: Set[DeliveryMethod] = commonMethods
}
final case object Radiation extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](8)
val name: String = "Radiation"
val deliveryMethods: Set[DeliveryMethod] = Set(
ExternalRadiationTherapy,
Brachytherapy,
SystemicRadiationTherapyIV,
SystemicRadiationTherapyOral,
ProtonBeamTherapy
)
}
final case object SurgeryProcedure extends InterventionType {
val id: LongId[InterventionType] = LongId[InterventionType](9)
val name: String = "Surgery/Procedure"
val deliveryMethods: Set[DeliveryMethod] = Set(
RadioFrequencyAblationRFA,
Cryoablation,
TherapeuticConventionalSurgery,
RoboticAssistedLaparoscopicSurgery
)
}
def typeFromString(txt: String): Option[InterventionType] = {
All.values.find(_.name === txt)
}
sealed trait DeliveryMethod
object DeliveryMethod {
case object IntravenousInfusionIV extends DeliveryMethod
case object IntramuscularInjection extends DeliveryMethod
case object SubcutaneousInjection extends DeliveryMethod
case object IntradermalInjection extends DeliveryMethod
case object SpinalInjection extends DeliveryMethod
case object Oral extends DeliveryMethod
case object Topical extends DeliveryMethod
case object TransdermalPatch extends DeliveryMethod
case object Inhalation extends DeliveryMethod
case object Rectal extends DeliveryMethod
case object ExternalRadiationTherapy extends DeliveryMethod
case object Brachytherapy extends DeliveryMethod
case object SystemicRadiationTherapyIV extends DeliveryMethod
case object SystemicRadiationTherapyOral extends DeliveryMethod
case object ProtonBeamTherapy extends DeliveryMethod
case object RadioFrequencyAblationRFA extends DeliveryMethod
case object Cryoablation extends DeliveryMethod
case object TherapeuticConventionalSurgery extends DeliveryMethod
case object RoboticAssistedLaparoscopicSurgery extends DeliveryMethod
def fromString: PartialFunction[String, DeliveryMethod] = {
case "Intravenous Infusion (IV)" => IntravenousInfusionIV
case "Intramuscular Injection" => IntramuscularInjection
case "Subcutaneous Injection" => SubcutaneousInjection
case "Intradermal Injection" => IntradermalInjection
case "Spinal Injection" => SpinalInjection
case "Oral" => Oral
case "Topical" => Topical
case "Transdermal Patch" => TransdermalPatch
case "Inhalation" => Inhalation
case "Rectal" => Rectal
case "External Radiation Therapy" => ExternalRadiationTherapy
case "Brachytherapy" => Brachytherapy
case "Systemic Radiation Therapy (IV)" => SystemicRadiationTherapyIV
case "Systemic Radiation Therapy (Oral)" => SystemicRadiationTherapyOral
case "Proton Beam Therapy" => ProtonBeamTherapy
case "Radio-Frequency Ablation (RFA)" => RadioFrequencyAblationRFA
case "Cryoablation" => Cryoablation
case "Therapeutic Conventional Surgery" => TherapeuticConventionalSurgery
case "Robotic Assisted Laparoscopic Surgery" => RoboticAssistedLaparoscopicSurgery
}
def methodToString(x: DeliveryMethod): String = x match {
case IntravenousInfusionIV => "Intravenous Infusion (IV)"
case IntramuscularInjection => "Intramuscular Injection"
case SubcutaneousInjection => "Subcutaneous Injection"
case IntradermalInjection => "Intradermal Injection"
case SpinalInjection => "Spinal Injection"
case Oral => "Oral"
case Topical => "Topical"
case TransdermalPatch => "Transdermal Patch"
case Inhalation => "Inhalation"
case Rectal => "Rectal"
case ExternalRadiationTherapy => "External Radiation Therapy"
case Brachytherapy => "Brachytherapy"
case SystemicRadiationTherapyIV => "Systemic Radiation Therapy (IV)"
case SystemicRadiationTherapyOral => "Systemic Radiation Therapy (Oral)"
case ProtonBeamTherapy => "Proton Beam Therapy"
case RadioFrequencyAblationRFA => "Radio-Frequency Ablation (RFA)"
case Cryoablation => "Cryoablation"
case TherapeuticConventionalSurgery => "Therapeutic Conventional Surgery"
case RoboticAssistedLaparoscopicSurgery => "Robotic Assisted Laparoscopic Surgery"
}
}
val commonMethods: Set[DeliveryMethod] = Set[DeliveryMethod](
IntravenousInfusionIV,
IntramuscularInjection,
SubcutaneousInjection,
IntradermalInjection,
SpinalInjection,
Oral,
Topical,
TransdermalPatch,
Inhalation,
Rectal
)
val All: Map[LongId[InterventionType], InterventionType] = Map[LongId[InterventionType], InterventionType](
LongId[InterventionType](2) -> Chemotherapy,
LongId[InterventionType](3) -> TargetedTherapy,
LongId[InterventionType](4) -> Immunotherapy,
LongId[InterventionType](6) -> HormoneTherapy,
LongId[InterventionType](7) -> Other,
LongId[InterventionType](8) -> Radiation,
LongId[InterventionType](9) -> SurgeryProcedure
)
implicit def toPhiString(x: InterventionType): PhiString = {
import x._
phi"InterventionType(id=$id, name=${Unsafe(name)})"
}
}
final case class InterventionArm(armId: LongId[SlotArm], interventionId: LongId[Intervention])
object InterventionArm {
implicit def toPhiString(x: InterventionArm): PhiString = {
import x._
phi"InterventionArm(armId=$armId, interventionId=$interventionId)"
}
}
final case class Intervention(id: LongId[Intervention],
trialId: StringId[Trial],
name: String,
originalName: String,
typeId: Option[LongId[InterventionType]],
originalType: Option[String],
dosage: String,
originalDosage: String,
isActive: Boolean,
deliveryMethod: Option[String]) {
def deliveryMethodIsCorrect: Boolean = {
if (this.typeId.nonEmpty && this.deliveryMethod.nonEmpty) {
InterventionType.All
.getOrElse(this.typeId.get, throw new IllegalArgumentException(s"Not found Intervention type ${this.typeId}"))
.deliveryMethods
.contains(DeliveryMethod.fromString(this.deliveryMethod.get))
} else true
}
}
object Intervention {
implicit def toPhiString(x: Intervention): PhiString = {
import x._
phi"Intervention(id=$id, trialId=$trialId, name=${Unsafe(name)}, typeId=$typeId, isActive=$isActive, deliveryMethod=${Unsafe(deliveryMethod)})"
}
}
final case class InterventionWithArms(intervention: Intervention, arms: List[InterventionArm])
object InterventionWithArms {
implicit def toPhiString(x: InterventionWithArms): PhiString = {
import x._
phi"InterventionWithArms(intervention=$intervention, arms=$arms)"
}
}
|
