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author | Takeshi YAMAMURO <linguin.m.s@gmail.com> | 2016-12-22 01:53:33 +0100 |
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committer | Herman van Hovell <hvanhovell@databricks.com> | 2016-12-22 01:53:33 +0100 |
commit | b41ec997786e2be42a8a2a182212a610d08b221b (patch) | |
tree | 7f60e50dedd0407d6a4a4316241228e064602723 | |
parent | 83a6ace0d1be44f70e768348ae6688798c84343e (diff) | |
download | spark-b41ec997786e2be42a8a2a182212a610d08b221b.tar.gz spark-b41ec997786e2be42a8a2a182212a610d08b221b.tar.bz2 spark-b41ec997786e2be42a8a2a182212a610d08b221b.zip |
[SPARK-18528][SQL] Fix a bug to initialise an iterator of aggregation buffer
## What changes were proposed in this pull request?
This pr is to fix an `NullPointerException` issue caused by a following `limit + aggregate` query;
```
scala> val df = Seq(("a", 1), ("b", 2), ("c", 1), ("d", 5)).toDF("id", "value")
scala> df.limit(2).groupBy("id").count().show
WARN TaskSetManager: Lost task 0.0 in stage 9.0 (TID 8204, lvsp20hdn012.stubprod.com): java.lang.NullPointerException
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithKeys$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
```
The root culprit is that [`$doAgg()`](https://github.com/apache/spark/blob/master/sql/core/src/main/scala/org/apache/spark/sql/execution/aggregate/HashAggregateExec.scala#L596) skips an initialization of [the buffer iterator](https://github.com/apache/spark/blob/master/sql/core/src/main/scala/org/apache/spark/sql/execution/aggregate/HashAggregateExec.scala#L603); `BaseLimitExec` sets `stopEarly=true` and `$doAgg()` exits in the middle without the initialization.
## How was this patch tested?
Added a test to check if no exception happens for limit + aggregates in `DataFrameAggregateSuite.scala`.
Author: Takeshi YAMAMURO <linguin.m.s@gmail.com>
Closes #15980 from maropu/SPARK-18528.
4 files changed, 22 insertions, 4 deletions
diff --git a/sql/core/src/main/java/org/apache/spark/sql/execution/BufferedRowIterator.java b/sql/core/src/main/java/org/apache/spark/sql/execution/BufferedRowIterator.java index 086547c793..730a4ae8d5 100644 --- a/sql/core/src/main/java/org/apache/spark/sql/execution/BufferedRowIterator.java +++ b/sql/core/src/main/java/org/apache/spark/sql/execution/BufferedRowIterator.java @@ -70,6 +70,16 @@ public abstract class BufferedRowIterator { } /** + * Returns whether this iterator should stop fetching next row from [[CodegenSupport#inputRDDs]]. + * + * If it returns true, the caller should exit the loop that [[InputAdapter]] generates. + * This interface is mainly used to limit the number of input rows. + */ + protected boolean stopEarly() { + return false; + } + + /** * Returns whether `processNext()` should stop processing next row from `input` or not. * * If it returns true, the caller should exit the loop (return from processNext()). diff --git a/sql/core/src/main/scala/org/apache/spark/sql/execution/WholeStageCodegenExec.scala b/sql/core/src/main/scala/org/apache/spark/sql/execution/WholeStageCodegenExec.scala index 516b9d5444..2ead8f6baa 100644 --- a/sql/core/src/main/scala/org/apache/spark/sql/execution/WholeStageCodegenExec.scala +++ b/sql/core/src/main/scala/org/apache/spark/sql/execution/WholeStageCodegenExec.scala @@ -241,7 +241,7 @@ case class InputAdapter(child: SparkPlan) extends UnaryExecNode with CodegenSupp ctx.addMutableState("scala.collection.Iterator", input, s"$input = inputs[0];") val row = ctx.freshName("row") s""" - | while ($input.hasNext()) { + | while ($input.hasNext() && !stopEarly()) { | InternalRow $row = (InternalRow) $input.next(); | ${consume(ctx, null, row).trim} | if (shouldStop()) return; diff --git a/sql/core/src/main/scala/org/apache/spark/sql/execution/limit.scala b/sql/core/src/main/scala/org/apache/spark/sql/execution/limit.scala index 9918ac327f..757fe2185d 100644 --- a/sql/core/src/main/scala/org/apache/spark/sql/execution/limit.scala +++ b/sql/core/src/main/scala/org/apache/spark/sql/execution/limit.scala @@ -70,10 +70,10 @@ trait BaseLimitExec extends UnaryExecNode with CodegenSupport { val stopEarly = ctx.freshName("stopEarly") ctx.addMutableState("boolean", stopEarly, s"$stopEarly = false;") - ctx.addNewFunction("shouldStop", s""" + ctx.addNewFunction("stopEarly", s""" @Override - protected boolean shouldStop() { - return !currentRows.isEmpty() || $stopEarly; + protected boolean stopEarly() { + return $stopEarly; } """) val countTerm = ctx.freshName("count") diff --git a/sql/core/src/test/scala/org/apache/spark/sql/DataFrameAggregateSuite.scala b/sql/core/src/test/scala/org/apache/spark/sql/DataFrameAggregateSuite.scala index 7aa4f0026f..645175900f 100644 --- a/sql/core/src/test/scala/org/apache/spark/sql/DataFrameAggregateSuite.scala +++ b/sql/core/src/test/scala/org/apache/spark/sql/DataFrameAggregateSuite.scala @@ -513,4 +513,12 @@ class DataFrameAggregateSuite extends QueryTest with SharedSQLContext { df.groupBy($"x").agg(countDistinct($"y"), sort_array(collect_list($"z"))), Seq(Row(1, 2, Seq("a", "b")), Row(3, 2, Seq("c", "c", "d")))) } + + test("SPARK-18004 limit + aggregates") { + val df = Seq(("a", 1), ("b", 2), ("c", 1), ("d", 5)).toDF("id", "value") + val limit2Df = df.limit(2) + checkAnswer( + limit2Df.groupBy("id").count().select($"id"), + limit2Df.select($"id")) + } } |