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authorShubhanshu Mishra <smishra8@illinois.edu>2016-01-20 18:06:06 -0800
committerShivaram Venkataraman <shivaram@cs.berkeley.edu>2016-01-20 18:06:06 -0800
commitd7415991a1c65f44ba385bc697b458125366523f (patch)
tree3848c1a62952f7734c564acf06b10bba61f05a7b /R/install-dev.sh
parentd60f8d74ace5670b1b451a0ea0b93d3b9775bb52 (diff)
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[SPARK-12910] Fixes : R version for installing sparkR
Testing code: ``` $ ./install-dev.sh USING R_HOME = /usr/bin ERROR: this R is version 2.15.1, package 'SparkR' requires R >= 3.0 ``` Using the new argument: ``` $ ./install-dev.sh /content/username/SOFTWARE/R-3.2.3 USING R_HOME = /content/username/SOFTWARE/R-3.2.3/bin * installing *source* package ‘SparkR’ ... ** R ** inst ** preparing package for lazy loading Creating a new generic function for ‘colnames’ in package ‘SparkR’ Creating a new generic function for ‘colnames<-’ in package ‘SparkR’ Creating a new generic function for ‘cov’ in package ‘SparkR’ Creating a new generic function for ‘na.omit’ in package ‘SparkR’ Creating a new generic function for ‘filter’ in package ‘SparkR’ Creating a new generic function for ‘intersect’ in package ‘SparkR’ Creating a new generic function for ‘sample’ in package ‘SparkR’ Creating a new generic function for ‘transform’ in package ‘SparkR’ Creating a new generic function for ‘subset’ in package ‘SparkR’ Creating a new generic function for ‘summary’ in package ‘SparkR’ Creating a new generic function for ‘lag’ in package ‘SparkR’ Creating a new generic function for ‘rank’ in package ‘SparkR’ Creating a new generic function for ‘sd’ in package ‘SparkR’ Creating a new generic function for ‘var’ in package ‘SparkR’ Creating a new generic function for ‘predict’ in package ‘SparkR’ Creating a new generic function for ‘rbind’ in package ‘SparkR’ Creating a generic function for ‘lapply’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘Filter’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘alias’ from package ‘stats’ in package ‘SparkR’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘%in%’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘mean’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘unique’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘head’ from package ‘utils’ in package ‘SparkR’ Creating a generic function for ‘factorial’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘atan2’ from package ‘base’ in package ‘SparkR’ Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘SparkR’ ** help No man pages found in package ‘SparkR’ *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (SparkR) ``` Author: Shubhanshu Mishra <smishra8@illinois.edu> Closes #10836 from napsternxg/master.
Diffstat (limited to 'R/install-dev.sh')
-rwxr-xr-xR/install-dev.sh11
1 files changed, 9 insertions, 2 deletions
diff --git a/R/install-dev.sh b/R/install-dev.sh
index 4972bb9217..befd413c4c 100755
--- a/R/install-dev.sh
+++ b/R/install-dev.sh
@@ -35,12 +35,19 @@ LIB_DIR="$FWDIR/lib"
mkdir -p $LIB_DIR
pushd $FWDIR > /dev/null
+if [ ! -z "$R_HOME" ]
+ then
+ R_SCRIPT_PATH="$R_HOME/bin"
+ else
+ R_SCRIPT_PATH="$(dirname $(which R))"
+fi
+echo "USING R_HOME = $R_HOME"
# Generate Rd files if devtools is installed
-Rscript -e ' if("devtools" %in% rownames(installed.packages())) { library(devtools); devtools::document(pkg="./pkg", roclets=c("rd")) }'
+"$R_SCRIPT_PATH/"Rscript -e ' if("devtools" %in% rownames(installed.packages())) { library(devtools); devtools::document(pkg="./pkg", roclets=c("rd")) }'
# Install SparkR to $LIB_DIR
-R CMD INSTALL --library=$LIB_DIR $FWDIR/pkg/
+"$R_SCRIPT_PATH/"R CMD INSTALL --library=$LIB_DIR $FWDIR/pkg/
# Zip the SparkR package so that it can be distributed to worker nodes on YARN
cd $LIB_DIR