[SPARK-11729] Replace example code in ml-linear-methods.md using include_example

JIRA link: https://issues.apache.org/jira/browse/SPARK-11729

Author: Xusen Yin <yinxusen@gmail.com>

Closes #9713 from yinxusen/SPARK-11729.

3 files changed, 204 insertions, 0 deletions

diff --git a/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearRegressionWithElasticNetExample.java b/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearRegressionWithElasticNetExample.java
new file mode 100644
index 0000000000..593f8fb3e9
--- /dev/null
+++ b/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearRegressionWithElasticNetExample.java
@@ -0,0 +1,65 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.examples.ml;
+
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+// $example on$
+import org.apache.spark.ml.regression.LinearRegression;
+import org.apache.spark.ml.regression.LinearRegressionModel;
+import org.apache.spark.ml.regression.LinearRegressionTrainingSummary;
+import org.apache.spark.mllib.linalg.Vectors;
+import org.apache.spark.sql.DataFrame;
+import org.apache.spark.sql.SQLContext;
+// $example off$
+
+public class JavaLinearRegressionWithElasticNetExample {
+  public static void main(String[] args) {
+    SparkConf conf = new SparkConf().setAppName("JavaLinearRegressionWithElasticNetExample");
+    JavaSparkContext jsc = new JavaSparkContext(conf);
+    SQLContext sqlContext = new SQLContext(jsc);
+
+    // $example on$
+    // Load training data
+    DataFrame training = sqlContext.read().format("libsvm")
+      .load("data/mllib/sample_libsvm_data.txt");
+
+    LinearRegression lr = new LinearRegression()
+      .setMaxIter(10)
+      .setRegParam(0.3)
+      .setElasticNetParam(0.8);
+
+    // Fit the model
+    LinearRegressionModel lrModel = lr.fit(training);
+
+    // Print the coefficients and intercept for linear regression
+    System.out.println("Coefficients: "
+      + lrModel.coefficients() + " Intercept: " + lrModel.intercept());
+
+    // Summarize the model over the training set and print out some metrics
+    LinearRegressionTrainingSummary trainingSummary = lrModel.summary();
+    System.out.println("numIterations: " + trainingSummary.totalIterations());
+    System.out.println("objectiveHistory: " + Vectors.dense(trainingSummary.objectiveHistory()));
+    trainingSummary.residuals().show();
+    System.out.println("RMSE: " + trainingSummary.rootMeanSquaredError());
+    System.out.println("r2: " + trainingSummary.r2());
+    // $example off$
+
+    jsc.stop();
+  }
+}
diff --git a/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionSummaryExample.java b/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionSummaryExample.java
new file mode 100644
index 0000000000..986f3b3b28
--- /dev/null
+++ b/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionSummaryExample.java
@@ -0,0 +1,84 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.examples.ml;
+
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+// $example on$
+import org.apache.spark.ml.classification.BinaryLogisticRegressionSummary;
+import org.apache.spark.ml.classification.LogisticRegression;
+import org.apache.spark.ml.classification.LogisticRegressionModel;
+import org.apache.spark.ml.classification.LogisticRegressionTrainingSummary;
+import org.apache.spark.sql.DataFrame;
+import org.apache.spark.sql.SQLContext;
+import org.apache.spark.sql.functions;
+// $example off$
+
+public class JavaLogisticRegressionSummaryExample {
+  public static void main(String[] args) {
+    SparkConf conf = new SparkConf().setAppName("JavaLogisticRegressionSummaryExample");
+    JavaSparkContext jsc = new JavaSparkContext(conf);
+    SQLContext sqlContext = new SQLContext(jsc);
+
+    // Load training data
+    DataFrame training = sqlContext.read().format("libsvm")
+      .load("data/mllib/sample_libsvm_data.txt");
+
+    LogisticRegression lr = new LogisticRegression()
+      .setMaxIter(10)
+      .setRegParam(0.3)
+      .setElasticNetParam(0.8);
+
+    // Fit the model
+    LogisticRegressionModel lrModel = lr.fit(training);
+
+    // $example on$
+    // Extract the summary from the returned LogisticRegressionModel instance trained in the earlier
+    // example
+    LogisticRegressionTrainingSummary trainingSummary = lrModel.summary();
+
+    // Obtain the loss per iteration.
+    double[] objectiveHistory = trainingSummary.objectiveHistory();
+    for (double lossPerIteration : objectiveHistory) {
+      System.out.println(lossPerIteration);
+    }
+
+    // Obtain the metrics useful to judge performance on test data.
+    // We cast the summary to a BinaryLogisticRegressionSummary since the problem is a binary
+    // classification problem.
+    BinaryLogisticRegressionSummary binarySummary =
+      (BinaryLogisticRegressionSummary) trainingSummary;
+
+    // Obtain the receiver-operating characteristic as a dataframe and areaUnderROC.
+    DataFrame roc = binarySummary.roc();
+    roc.show();
+    roc.select("FPR").show();
+    System.out.println(binarySummary.areaUnderROC());
+
+    // Get the threshold corresponding to the maximum F-Measure and rerun LogisticRegression with
+    // this selected threshold.
+    DataFrame fMeasure = binarySummary.fMeasureByThreshold();
+    double maxFMeasure = fMeasure.select(functions.max("F-Measure")).head().getDouble(0);
+    double bestThreshold = fMeasure.where(fMeasure.col("F-Measure").equalTo(maxFMeasure))
+      .select("threshold").head().getDouble(0);
+    lrModel.setThreshold(bestThreshold);
+    // $example off$
+
+    jsc.stop();
+  }
+}
diff --git a/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java b/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java
new file mode 100644
index 0000000000..1d28279d72
--- /dev/null
+++ b/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java
@@ -0,0 +1,55 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.examples.ml;
+
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+// $example on$
+import org.apache.spark.ml.classification.LogisticRegression;
+import org.apache.spark.ml.classification.LogisticRegressionModel;
+import org.apache.spark.sql.DataFrame;
+import org.apache.spark.sql.SQLContext;
+// $example off$
+
+public class JavaLogisticRegressionWithElasticNetExample {
+  public static void main(String[] args) {
+    SparkConf conf = new SparkConf().setAppName("JavaLogisticRegressionWithElasticNetExample");
+    JavaSparkContext jsc = new JavaSparkContext(conf);
+    SQLContext sqlContext = new SQLContext(jsc);
+
+    // $example on$
+    // Load training data
+    DataFrame training = sqlContext.read().format("libsvm")
+      .load("data/mllib/sample_libsvm_data.txt");
+
+    LogisticRegression lr = new LogisticRegression()
+      .setMaxIter(10)
+      .setRegParam(0.3)
+      .setElasticNetParam(0.8);
+
+    // Fit the model
+    LogisticRegressionModel lrModel = lr.fit(training);
+
+    // Print the coefficients and intercept for logistic regression
+    System.out.println("Coefficients: "
+      + lrModel.coefficients() + " Intercept: " + lrModel.intercept());
+    // $example off$
+
+    jsc.stop();
+  }
+}