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+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements. See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+from numpy import ndarray, copyto, float64, int64, int32, ones, array_equal, array, dot, shape
+from pyspark import SparkContext
+
+# Double vector format:
+#
+# [8-byte 1] [8-byte length] [length*8 bytes of data]
+#
+# Double matrix format:
+#
+# [8-byte 2] [8-byte rows] [8-byte cols] [rows*cols*8 bytes of data]
+#
+# This is all in machine-endian. That means that the Java interpreter and the
+# Python interpreter must agree on what endian the machine is.
+
+def _deserialize_byte_array(shape, ba, offset):
+ """Wrapper around ndarray aliasing hack.
+
+ >>> x = array([1.0, 2.0, 3.0, 4.0, 5.0])
+ >>> array_equal(x, _deserialize_byte_array(x.shape, x.data, 0))
+ True
+ >>> x = array([1.0, 2.0, 3.0, 4.0]).reshape(2,2)
+ >>> array_equal(x, _deserialize_byte_array(x.shape, x.data, 0))
+ True
+ """
+ ar = ndarray(shape=shape, buffer=ba, offset=offset, dtype="float64",
+ order='C')
+ return ar.copy()
+
+def _serialize_double_vector(v):
+ """Serialize a double vector into a mutually understood format."""
+ if type(v) != ndarray:
+ raise TypeError("_serialize_double_vector called on a %s; "
+ "wanted ndarray" % type(v))
+ if v.dtype != float64:
+ raise TypeError("_serialize_double_vector called on an ndarray of %s; "
+ "wanted ndarray of float64" % v.dtype)
+ if v.ndim != 1:
+ raise TypeError("_serialize_double_vector called on a %ddarray; "
+ "wanted a 1darray" % v.ndim)
+ length = v.shape[0]
+ ba = bytearray(16 + 8*length)
+ header = ndarray(shape=[2], buffer=ba, dtype="int64")
+ header[0] = 1
+ header[1] = length
+ copyto(ndarray(shape=[length], buffer=ba, offset=16,
+ dtype="float64"), v)
+ return ba
+
+def _deserialize_double_vector(ba):
+ """Deserialize a double vector from a mutually understood format.
+
+ >>> x = array([1.0, 2.0, 3.0, 4.0, -1.0, 0.0, -0.0])
+ >>> array_equal(x, _deserialize_double_vector(_serialize_double_vector(x)))
+ True
+ """
+ if type(ba) != bytearray:
+ raise TypeError("_deserialize_double_vector called on a %s; "
+ "wanted bytearray" % type(ba))
+ if len(ba) < 16:
+ raise TypeError("_deserialize_double_vector called on a %d-byte array, "
+ "which is too short" % len(ba))
+ if (len(ba) & 7) != 0:
+ raise TypeError("_deserialize_double_vector called on a %d-byte array, "
+ "which is not a multiple of 8" % len(ba))
+ header = ndarray(shape=[2], buffer=ba, dtype="int64")
+ if header[0] != 1:
+ raise TypeError("_deserialize_double_vector called on bytearray "
+ "with wrong magic")
+ length = header[1]
+ if len(ba) != 8*length + 16:
+ raise TypeError("_deserialize_double_vector called on bytearray "
+ "with wrong length")
+ return _deserialize_byte_array([length], ba, 16)
+
+def _serialize_double_matrix(m):
+ """Serialize a double matrix into a mutually understood format."""
+ if (type(m) == ndarray and m.dtype == float64 and m.ndim == 2):
+ rows = m.shape[0]
+ cols = m.shape[1]
+ ba = bytearray(24 + 8 * rows * cols)
+ header = ndarray(shape=[3], buffer=ba, dtype="int64")
+ header[0] = 2
+ header[1] = rows
+ header[2] = cols
+ copyto(ndarray(shape=[rows, cols], buffer=ba, offset=24,
+ dtype="float64", order='C'), m)
+ return ba
+ else:
+ raise TypeError("_serialize_double_matrix called on a "
+ "non-double-matrix")
+
+def _deserialize_double_matrix(ba):
+ """Deserialize a double matrix from a mutually understood format."""
+ if type(ba) != bytearray:
+ raise TypeError("_deserialize_double_matrix called on a %s; "
+ "wanted bytearray" % type(ba))
+ if len(ba) < 24:
+ raise TypeError("_deserialize_double_matrix called on a %d-byte array, "
+ "which is too short" % len(ba))
+ if (len(ba) & 7) != 0:
+ raise TypeError("_deserialize_double_matrix called on a %d-byte array, "
+ "which is not a multiple of 8" % len(ba))
+ header = ndarray(shape=[3], buffer=ba, dtype="int64")
+ if (header[0] != 2):
+ raise TypeError("_deserialize_double_matrix called on bytearray "
+ "with wrong magic")
+ rows = header[1]
+ cols = header[2]
+ if (len(ba) != 8*rows*cols + 24):
+ raise TypeError("_deserialize_double_matrix called on bytearray "
+ "with wrong length")
+ return _deserialize_byte_array([rows, cols], ba, 24)
+
+def _linear_predictor_typecheck(x, coeffs):
+ """Check that x is a one-dimensional vector of the right shape.
+ This is a temporary hackaround until I actually implement bulk predict."""
+ if type(x) == ndarray:
+ if x.ndim == 1:
+ if x.shape == coeffs.shape:
+ pass
+ else:
+ raise RuntimeError("Got array of %d elements; wanted %d"
+ % (shape(x)[0], shape(coeffs)[0]))
+ else:
+ raise RuntimeError("Bulk predict not yet supported.")
+ elif (type(x) == RDD):
+ raise RuntimeError("Bulk predict not yet supported.")
+ else:
+ raise TypeError("Argument of type " + type(x).__name__ + " unsupported")
+
+def _get_unmangled_rdd(data, serializer):
+ dataBytes = data.map(serializer)
+ dataBytes._bypass_serializer = True
+ dataBytes.cache()
+ return dataBytes
+
+# Map a pickled Python RDD of numpy double vectors to a Java RDD of
+# _serialized_double_vectors
+def _get_unmangled_double_vector_rdd(data):
+ return _get_unmangled_rdd(data, _serialize_double_vector)
+
+class LinearModel(object):
+ """Something that has a vector of coefficients and an intercept."""
+ def __init__(self, coeff, intercept):
+ self._coeff = coeff
+ self._intercept = intercept
+
+class LinearRegressionModelBase(LinearModel):
+ """A linear regression model.
+
+ >>> lrmb = LinearRegressionModelBase(array([1.0, 2.0]), 0.1)
+ >>> abs(lrmb.predict(array([-1.03, 7.777])) - 14.624) < 1e-6
+ True
+ """
+ def predict(self, x):
+ """Predict the value of the dependent variable given a vector x"""
+ """containing values for the independent variables."""
+ _linear_predictor_typecheck(x, self._coeff)
+ return dot(self._coeff, x) + self._intercept
+
+# If we weren't given initial weights, take a zero vector of the appropriate
+# length.
+def _get_initial_weights(initial_weights, data):
+ if initial_weights is None:
+ initial_weights = data.first()
+ if type(initial_weights) != ndarray:
+ raise TypeError("At least one data element has type "
+ + type(initial_weights).__name__ + " which is not ndarray")
+ if initial_weights.ndim != 1:
+ raise TypeError("At least one data element has "
+ + initial_weights.ndim + " dimensions, which is not 1")
+ initial_weights = ones([initial_weights.shape[0] - 1])
+ return initial_weights
+
+# train_func should take two parameters, namely data and initial_weights, and
+# return the result of a call to the appropriate JVM stub.
+# _regression_train_wrapper is responsible for setup and error checking.
+def _regression_train_wrapper(sc, train_func, klass, data, initial_weights):
+ initial_weights = _get_initial_weights(initial_weights, data)
+ dataBytes = _get_unmangled_double_vector_rdd(data)
+ ans = train_func(dataBytes, _serialize_double_vector(initial_weights))
+ if len(ans) != 2:
+ raise RuntimeError("JVM call result had unexpected length")
+ elif type(ans[0]) != bytearray:
+ raise RuntimeError("JVM call result had first element of type "
+ + type(ans[0]).__name__ + " which is not bytearray")
+ elif type(ans[1]) != float:
+ raise RuntimeError("JVM call result had second element of type "
+ + type(ans[0]).__name__ + " which is not float")
+ return klass(_deserialize_double_vector(ans[0]), ans[1])
+
+def _serialize_rating(r):
+ ba = bytearray(16)
+ intpart = ndarray(shape=[2], buffer=ba, dtype=int32)
+ doublepart = ndarray(shape=[1], buffer=ba, dtype=float64, offset=8)
+ intpart[0], intpart[1], doublepart[0] = r
+ return ba
+
+def _test():
+ import doctest
+ globs = globals().copy()
+ globs['sc'] = SparkContext('local[4]', 'PythonTest', batchSize=2)
+ (failure_count, test_count) = doctest.testmod(globs=globs,
+ optionflags=doctest.ELLIPSIS)
+ globs['sc'].stop()
+ if failure_count:
+ exit(-1)
+
+if __name__ == "__main__":
+ _test()