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* [SPARK-9383][PROJECT-INFRA] PR merge script should reset back to previous ↵Josh Rosen2016-01-131-3/+16
| | | | | | | | | | | | branch when possible This patch modifies our PR merge script to reset back to a named branch when restoring the original checkout upon exit. When the committer is originally checked out to a detached head, then they will be restored back to that same ref (the same as today's behavior). This is a slightly updated version of #7569, with an extra fix to handle the detached head corner-case. Author: Josh Rosen <joshrosen@databricks.com> Closes #10709 from JoshRosen/SPARK-9383.
* [SPARK-12652][PYSPARK] Upgrade Py4J to 0.9.1Shixiong Zhu2016-01-124-4/+4
| | | | | | | | | | | | - [x] Upgrade Py4J to 0.9.1 - [x] SPARK-12657: Revert SPARK-12617 - [x] SPARK-12658: Revert SPARK-12511 - Still keep the change that only reading checkpoint once. This is a manual change and worth to take a look carefully. https://github.com/zsxwing/spark/commit/bfd4b5c040eb29394c3132af3c670b1a7272457c - [x] Verify no leak any more after reverting our workarounds Author: Shixiong Zhu <shixiong@databricks.com> Closes #10692 from zsxwing/py4j-0.9.1.
* [SPARK-12734][HOTFIX] Build changes must trigger all tests; clean after ↵Josh Rosen2016-01-112-2/+2
| | | | | | | | | | | | | | | | install in dep tests This patch fixes a build/test issue caused by the combination of #10672 and a latent issue in the original `dev/test-dependencies` script. First, changes which _only_ touched build files were not triggering full Jenkins runs, making it possible for a build change to be merged even though it could cause failures in other tests. The `root` build module now depends on `build`, so all tests will now be run whenever a build-related file is changed. I also added a `clean` step to the Maven install step in `dev/test-dependencies` in order to address an issue where the dummy JARs stuck around and caused "multiple assembly JARs found" errors in tests. /cc zsxwing Author: Josh Rosen <joshrosen@databricks.com> Closes #10704 from JoshRosen/fix-build-test-problems.
* [SPARK-12269][STREAMING][KINESIS] Update aws-java-sdk versionBrianLondon2016-01-114-16/+16
| | | | | | | | The current Spark Streaming kinesis connector references a quite old version 1.9.40 of the AWS Java SDK (1.10.40 is current). Numerous AWS features including Kinesis Firehose are unavailable in 1.9. Those two versions of the AWS SDK in turn require conflicting versions of Jackson (2.4.4 and 2.5.3 respectively) such that one cannot include the current AWS SDK in a project that also uses the Spark Streaming Kinesis ASL. Author: BrianLondon <brian@seatgeek.com> Closes #10256 from BrianLondon/master.
* [SPARK-12734][HOTFIX][TEST-MAVEN] Fix bug in Netty exclusionsJosh Rosen2016-01-114-0/+4
| | | | | | | | | | This is a hotfix for a build bug introduced by the Netty exclusion changes in #10672. We can't exclude `io.netty:netty` because Akka depends on it. There's not a direct conflict between `io.netty:netty` and `io.netty:netty-all`, because the former puts classes in the `org.jboss.netty` namespace while the latter uses the `io.netty` namespace. However, there still is a conflict between `org.jboss.netty:netty` and `io.netty:netty`, so we need to continue to exclude the JBoss version of that artifact. While the diff here looks somewhat large, note that this is only a revert of a some of the changes from #10672. You can see the net changes in pom.xml at https://github.com/apache/spark/compare/3119206b7188c23055621dfeaf6874f21c711a82...5211ab8#diff-600376dffeb79835ede4a0b285078036 Author: Josh Rosen <joshrosen@databricks.com> Closes #10693 from JoshRosen/netty-hotfix.
* [SPARK-12734][BUILD] Fix Netty exclusion and use Maven Enforcer to prevent ↵Josh Rosen2016-01-105-17/+4
| | | | | | | | | | | | | | | future bugs Netty classes are published under multiple artifacts with different names, so our build needs to exclude the `io.netty:netty` and `org.jboss.netty:netty` versions of the Netty artifact. However, our existing exclusions were incomplete, leading to situations where duplicate Netty classes would wind up on the classpath and cause compile errors (or worse). This patch fixes the exclusion issue by adding more exclusions and uses Maven Enforcer's [banned dependencies](https://maven.apache.org/enforcer/enforcer-rules/bannedDependencies.html) rule to prevent these classes from accidentally being reintroduced. I also updated `dev/test-dependencies.sh` to run `mvn validate` so that the enforcer rules can run as part of pull request builds. /cc rxin srowen pwendell. I'd like to backport at least the exclusion portion of this fix to `branch-1.5` in order to fix the documentation publishing job, which fails nondeterministically due to incompatible versions of Netty classes taking precedence on the compile-time classpath. Author: Josh Rosen <rosenville@gmail.com> Author: Josh Rosen <joshrosen@databricks.com> Closes #10672 from JoshRosen/enforce-netty-exclusions.
* [SPARK-12735] Consolidate & move spark-ec2 to AMPLab managed repository.Reynold Xin2016-01-094-14/+1
| | | | | | Author: Reynold Xin <rxin@databricks.com> Closes #10673 from rxin/SPARK-12735.
* [SPARK-12573][SPARK-12574][SQL] Move SQL Parser from Hive to CatalystHerman van Hovell2016-01-064-12/+4
| | | | | | | | | | | | | | | | | This PR moves a major part of the new SQL parser to Catalyst. This is a prelude to start using this parser for all of our SQL parsing. The following key changes have been made: The ANTLR Parser & Supporting classes have been moved to the Catalyst project. They are now part of the ```org.apache.spark.sql.catalyst.parser``` package. These classes contained quite a bit of code that was originally from the Hive project, I have added aknowledgements whenever this applied. All Hive dependencies have been factored out. I have also taken this chance to clean-up the ```ASTNode``` class, and to improve the error handling. The HiveQl object that provides the functionality to convert an AST into a LogicalPlan has been refactored into three different classes, one for every SQL sub-project: - ```CatalystQl```: This implements Query and Expression parsing functionality. - ```SparkQl```: This is a subclass of CatalystQL and provides SQL/Core only functionality such as Explain and Describe. - ```HiveQl```: This is a subclass of ```SparkQl``` and this adds Hive-only functionality to the parser such as Analyze, Drop, Views, CTAS & Transforms. This class still depends on Hive. cc rxin Author: Herman van Hovell <hvanhovell@questtec.nl> Closes #10583 from hvanhovell/SPARK-12575.
* [SPARK-12625][SPARKR][SQL] replace R usage of Spark SQL deprecated APIfelixcheung2016-01-041-6/+5
| | | | | | | | | | | rxin davies shivaram Took save mode from my PR #10480, and move everything to writer methods. This is related to PR #10559 - [x] it seems jsonRDD() is broken, need to investigate - this is not a public API though; will look into some more tonight. (fixed) Author: felixcheung <felixcheung_m@hotmail.com> Closes #10584 from felixcheung/rremovedeprecated.
* [SPARK-12600][SQL] Remove deprecated methods in Spark SQLReynold Xin2016-01-041-5/+6
| | | | | | Author: Reynold Xin <rxin@databricks.com> Closes #10559 from rxin/remove-deprecated-sql.
* [SPARK-10359][PROJECT-INFRA] Use more random number in ↵Josh Rosen2016-01-042-5/+15
| | | | | | | | | | | | | | dev/test-dependencies.sh; fix version switching This patch aims to fix another potential source of flakiness in the `dev/test-dependencies.sh` script. pwendell's original patch and my version used `$(date +%s | tail -c6)` to generate a suffix to use when installing temporary Spark versions into the local Maven cache, but this value only changes once per second and thus is highly collision-prone when concurrent builds launch on AMPLab Jenkins. In order to reduce the potential for conflicts, this patch updates the script to call Python's random number generator instead. I also fixed a bug in how we captured the original project version; the bug was causing the exit handler code to fail. Author: Josh Rosen <joshrosen@databricks.com> Closes #10558 from JoshRosen/build-dep-tests-round-3.
* [SPARK-12612][PROJECT-INFRA] Add missing Hadoop profiles to ↵Josh Rosen2016-01-035-2/+394
| | | | | | | | | | | | dev/run-tests-*.py scripts and dev/deps There are a couple of places in the `dev/run-tests-*.py` scripts which deal with Hadoop profiles, but the set of profiles that they handle does not include all Hadoop profiles defined in our POM. Similarly, the `hadoop-2.2` and `hadoop-2.6` profiles were missing from `dev/deps`. This patch updates these scripts to include all four Hadoop profiles defined in our POM. Author: Josh Rosen <joshrosen@databricks.com> Closes #10565 from JoshRosen/add-missing-hadoop-profiles-in-test-scripts.
* Disable test-dependencies.sh.Reynold Xin2016-01-011-2/+3
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* [SPARK-10359][PROJECT-INFRA] Multiple fixes to dev/test-dependencies.sh scriptJosh Rosen2015-12-312-2/+9
| | | | | | | | | | | | | This patch includes multiple fixes for the `dev/test-dependencies.sh` script (which was introduced in #10461): - Use `build/mvn --force` instead of `mvn` in one additional place. - Explicitly set a zero exit code on success. - Set `LC_ALL=C` to make `sort` results agree across machines (see https://stackoverflow.com/questions/28881/). - Set `should_run_build_tests=True` for `build` module (this somehow got lost). Author: Josh Rosen <joshrosen@databricks.com> Closes #10543 from JoshRosen/dep-script-fixes.
* [SPARK-10359] Enumerate dependencies in a file and diff against it for new ↵Josh Rosen2015-12-308-120/+494
| | | | | | | | | | | | | | | | | pull requests This patch adds a new build check which enumerates Spark's resolved runtime classpath and saves it to a file, then diffs against that file to detect whether pull requests have introduced dependency changes. The aim of this check is to make it simpler to reason about whether pull request which modify the build have introduced new dependencies or changed transitive dependencies in a way that affects the final classpath. This supplants the checks added in SPARK-4123 / #5093, which are currently disabled due to bugs. This patch is based on pwendell's work in #8531. Closes #8531. Author: Josh Rosen <joshrosen@databricks.com> Author: Patrick Wendell <patrick@databricks.com> Closes #10461 from JoshRosen/SPARK-10359.
* [SPARK-12508][PROJECT-INFRA] Fix minor bugs in ↵Josh Rosen2015-12-281-17/+25
| | | | | | | | | | | | | | dev/tests/pr_public_classes.sh script This patch fixes a handful of minor bugs in the `dev/tests/pr_public_classes.sh` script, which is used by the `run_tests_jenkins` script to detect the addition of new public classes: - Account for differences between BSD and GNU `sed` in order to allow the script to run on OS X. - Diff `$ghprbActualCommit^...$ghprbActualCommit ` instead of `master...$ghprbActualCommit`: since `ghprbActualCommit` is a merge commit which results from merging the PR into the target branch, this will give us the desired diff and will avoid certain race-conditions which could lead to false-positives. - Use `echo -e` instead of `echo` so that newline characters are handled correctly in output. This should fix a formatting glitch which caused the output to appear on a single line in the GitHub comment (see [the SC2028 page](https://github.com/koalaman/shellcheck/wiki/SC2028) on the Shellcheck wiki for more details). Author: Josh Rosen <joshrosen@databricks.com> Closes #10455 from JoshRosen/fix-pr-public-classes-test.
* [SPARK-12502][BUILD][PYTHON] Script /dev/run-tests fails when IBM Java is usedKazuaki Ishizaki2015-12-241-4/+3
| | | | | | | | fix an exception with IBM JDK by removing update field from a JavaVersion tuple. This is because IBM JDK does not have information on update '_xx' Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Closes #10463 from kiszk/SPARK-12502.
* [SPARK-11807] Remove support for Hadoop < 2.2Reynold Xin2015-12-213-9/+0
| | | | | | | | i.e. Hadoop 1 and Hadoop 2.0 Author: Reynold Xin <rxin@databricks.com> Closes #10404 from rxin/SPARK-11807.
* [SPARK-11808] Remove Bagel.Reynold Xin2015-12-191-1/+1
| | | | | | Author: Reynold Xin <rxin@databricks.com> Closes #10395 from rxin/SPARK-11808.
* HOTFIX for the previous hot fix.Reynold Xin2015-12-191-0/+1
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* HOTFIX: Disable Java style test.Reynold Xin2015-12-191-1/+1
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* [SPARK-12152][PROJECT-INFRA] Speed up Scalastyle checks by only invoking SBT ↵Josh Rosen2015-12-061-8/+11
| | | | | | | | | | once Currently, `dev/scalastyle` invokes SBT four times, but these invocations can be replaced with a single invocation, saving about one minute of build time. Author: Josh Rosen <joshrosen@databricks.com> Closes #10151 from JoshRosen/speed-up-scalastyle.
* [SPARK-6990][BUILD] Add Java linting script; fix minor warningsDmitry Erastov2015-12-044-0/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This replaces https://github.com/apache/spark/pull/9696 Invoke Checkstyle and print any errors to the console, failing the step. Use Google's style rules modified according to https://cwiki.apache.org/confluence/display/SPARK/Spark+Code+Style+Guide Some important checks are disabled (see TODOs in `checkstyle.xml`) due to multiple violations being present in the codebase. Suggest fixing those TODOs in a separate PR(s). More on Checkstyle can be found on the [official website](http://checkstyle.sourceforge.net/). Sample output (from [build 46345](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/46345/consoleFull)) (duplicated because I run the build twice with different profiles): > Checkstyle checks failed at following occurrences: [ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/UnsafeRowParquetRecordReader.java:[217,7] (coding) MissingSwitchDefault: switch without "default" clause. > [ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/SpecificParquetRecordReaderBase.java:[198,10] (modifier) ModifierOrder: 'protected' modifier out of order with the JLS suggestions. > [ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/UnsafeRowParquetRecordReader.java:[217,7] (coding) MissingSwitchDefault: switch without "default" clause. > [ERROR] src/main/java/org/apache/spark/sql/execution/datasources/parquet/SpecificParquetRecordReaderBase.java:[198,10] (modifier) ModifierOrder: 'protected' modifier out of order with the JLS suggestions. > [error] running /home/jenkins/workspace/SparkPullRequestBuilder2/dev/lint-java ; received return code 1 Also fix some of the minor violations that didn't require sweeping changes. Apologies for the previous botched PRs - I finally figured out the issue. cr: JoshRosen, pwendell > I state that the contribution is my original work, and I license the work to the project under the project's open source license. Author: Dmitry Erastov <derastov@gmail.com> Closes #9867 from dskrvk/master.
* [SPARK-12020][TESTS][TEST-HADOOP2.0] PR builder cannot trigger hadoop 2.0 testYin Huai2015-11-271-1/+1
| | | | | | | | https://issues.apache.org/jira/browse/SPARK-12020 Author: Yin Huai <yhuai@databricks.com> Closes #10010 from yhuai/SPARK-12020.
* [SPARK-7841][BUILD] Stop using retrieveManaged to retrieve dependencies in SBTJosh Rosen2015-11-101-1/+1
| | | | | | | | | | | | | | This patch modifies Spark's SBT build so that it no longer uses `retrieveManaged` / `lib_managed` to store its dependencies. The motivations for this change are nicely described on the JIRA ticket ([SPARK-7841](https://issues.apache.org/jira/browse/SPARK-7841)); my personal interest in doing this stems from the fact that `lib_managed` has caused me some pain while debugging dependency issues in another PR of mine. Removing our use of `lib_managed` would be trivial except for one snag: the Datanucleus JARs, required by Spark SQL's Hive integration, cannot be included in assembly JARs due to problems with merging OSGI `plugin.xml` files. As a result, several places in the packaging and deployment pipeline assume that these Datanucleus JARs are copied to `lib_managed/jars`. In the interest of maintaining compatibility, I have chosen to retain the `lib_managed/jars` directory _only_ for these Datanucleus JARs and have added custom code to `SparkBuild.scala` to automatically copy those JARs to that folder as part of the `assembly` task. `dev/mima` also depended on `lib_managed` in a hacky way in order to set classpaths when generating MiMa excludes; I've updated this to obtain the classpaths directly from SBT instead. /cc dragos marmbrus pwendell srowen Author: Josh Rosen <joshrosen@databricks.com> Closes #9575 from JoshRosen/SPARK-7841.
* [SPARK-11491] Update build to use Scala 2.10.5Josh Rosen2015-11-042-2/+2
| | | | | | | | Spark should build against Scala 2.10.5, since that includes a fix for Scaladoc that will fix doc snapshot publishing: https://issues.scala-lang.org/browse/SI-8479 Author: Josh Rosen <joshrosen@databricks.com> Closes #9450 from JoshRosen/upgrade-to-scala-2.10.5.
* [SPARK-11342][TESTS] Allow to set hadoop profile when running dev/ru…Jeff Zhang2015-10-301-1/+1
| | | | | | | | …n_tests Author: Jeff Zhang <zjffdu@apache.org> Closes #9295 from zjffdu/SPARK-11342.
* [SPARK-7018][BUILD] Refactor dev/run-tests-jenkins into PythonBrennon York2015-10-187-251/+284
| | | | | | | | | | | | | | | | | | This commit refactors the `run-tests-jenkins` script into Python. This refactoring was done by brennonyork in #7401; this PR contains a few minor edits from joshrosen in order to bring it up to date with other recent changes. From the original PR description (by brennonyork): Currently a few things are left out that, could and I think should, be smaller JIRA's after this. 1. There are still a few areas where we use environment variables where we don't need to (like `CURRENT_BLOCK`). I might get around to fixing this one in lieu of everything else, but wanted to point that out. 2. The PR tests are still written in bash. I opted to not change those and just rewrite the runner into Python. This is a great follow-on JIRA IMO. 3. All of the linting scripts are still in bash as well and would likely do to just add those in as follow-on JIRA's as well. Closes #7401. Author: Brennon York <brennon.york@capitalone.com> Closes #9161 from JoshRosen/run-tests-jenkins-refactoring.
* [SPARK-11169] Remove the extra spaces in merge scriptReynold Xin2015-10-181-8/+8
| | | | | | | | | | | | | | | | | | | | | Our merge script now turns ``` [SPARK-1234][SPARK-1235][SPARK-1236][SQL] description ``` into ``` [SPARK-1234] [SPARK-1235] [SPARK-1236] [SQL] description ``` The extra spaces are more annoying in git since the first line of a git commit is supposed to be very short. Doctest passes with the following command: ``` python -m doctest merge_spark_pr.py ``` Author: Reynold Xin <rxin@databricks.com> Closes #9156 from rxin/SPARK-11169.
* [SPARK-11094] Strip extra strings from Java version in test runnerJakob Odersky2015-10-161-9/+6
| | | | | | | | | Removes any extra strings from the Java version, fixing subsequent integer parsing. This is required since some OpenJDK versions (specifically in Debian testing), append an extra "-internal" string to the version field. Author: Jakob Odersky <jodersky@gmail.com> Closes #9111 from jodersky/fixtestrunner.
* [SPARK-10932] [PROJECT INFRA] Port two minor changes to release-build.sh ↵Josh Rosen2015-10-131-3/+7
| | | | | | | | | | | | from scripts' old repo Spark's release packaging scripts used to live in a separate repository. Although these scripts are now part of the Spark repo, there are some minor patches made against the old repos that are missing in Spark's copy of the script. This PR ports those changes. /cc shivaram, who originally submitted these changes against https://github.com/rxin/spark-utils Author: Josh Rosen <joshrosen@databricks.com> Closes #8986 from JoshRosen/port-release-build-fixes-from-rxin-repo.
* [SPARK-10300] [BUILD] [TESTS] Add support for test tags in run-tests.py.Marcelo Vanzin2015-10-072-3/+40
| | | | | | Author: Marcelo Vanzin <vanzin@cloudera.com> Closes #8775 from vanzin/SPARK-10300.
* [SPARK-10657] Remove SCP-based Jenkins log archivingJosh Rosen2015-09-171-35/+0
| | | | | | | | | | As of https://issues.apache.org/jira/browse/SPARK-7561, we no longer need to use our custom SCP-based mechanism for archiving Jenkins logs on the master machine; this has been superseded by the use of a Jenkins plugin which archives the logs and provides public links to view them. Per shaneknapp, we should remove this log syncing mechanism if it is no longer necessary; removing the need to SCP from the Jenkins workers to the masters is a desired step as part of some larger Jenkins infra refactoring. Author: Josh Rosen <joshrosen@databricks.com> Closes #8793 from JoshRosen/remove-jenkins-ssh-to-master.
* [SPARK-10511] [BUILD] Reset git repository before packaging source distroLuciano Resende2015-09-161-0/+1
| | | | | | | | | | | | | The calculation of Spark version is downloading Scala and Zinc in the build directory which is inflating the size of the source distribution. Reseting the repo before packaging the source distribution fix this issue. Author: Luciano Resende <lresende@apache.org> Closes #8774 from lresende/spark-10511.
* Revert "[SPARK-10300] [BUILD] [TESTS] Add support for test tags in ↵Marcelo Vanzin2015-09-152-40/+3
| | | | | | run-tests.py." This reverts commit 8abef21dac1a6538c4e4e0140323b83d804d602b.
* [SPARK-10300] [BUILD] [TESTS] Add support for test tags in run-tests.py.Marcelo Vanzin2015-09-152-3/+40
| | | | | | | | | | | | | | | This change does two things: - tag a few tests and adds the mechanism in the build to be able to disable those tags, both in maven and sbt, for both junit and scalatest suites. - add some logic to run-tests.py to disable some tags depending on what files have changed; that's used to disable expensive tests when a module hasn't explicitly been changed, to speed up testing for changes that don't directly affect those modules. Author: Marcelo Vanzin <vanzin@cloudera.com> Closes #8437 from vanzin/test-tags.
* [SPARK-10497] [BUILD] [TRIVIAL] Handle both locations for JIRAError with ↵Holden Karau2015-09-101-1/+5
| | | | | | | | | | | python-jira Location of JIRAError has moved between old and new versions of python-jira package. Longer term it probably makes sense to pin to specific versions (as mentioned in https://issues.apache.org/jira/browse/SPARK-10498 ) but for now, making release tools works with both new and old versions of python-jira. Author: Holden Karau <holden@pigscanfly.ca> Closes #8661 from holdenk/SPARK-10497-release-utils-does-not-work-with-new-jira-python.
* [RELEASE] Add more contributors & only show names in release notes.Reynold Xin2015-09-082-8/+39
| | | | | | Author: Reynold Xin <rxin@databricks.com> Closes #8660 from rxin/contrib.
* SPARK-9545, SPARK-9547: Use Maven in PRB if title contains "[test-maven]"Patrick Wendell2015-08-302-4/+42
| | | | | | | | | | | | | This is just some small glue code to actually make use of the AMPLAB_JENKINS_BUILD_TOOL switch. As far as I can tell, we actually don't currently use the Maven support in the tool even though it exists. This patch switches to Maven when the PR title contains "test-maven". There are a few small other pieces of cleanup in the patch as well. Author: Patrick Wendell <patrick@databricks.com> Closes #7878 from pwendell/maven-tests.
* [SPARK-10328] [SPARKR] Fix generic for na.omitShivaram Venkataraman2015-08-281-1/+1
| | | | | | | | | | S3 function is at https://stat.ethz.ch/R-manual/R-patched/library/stats/html/na.fail.html Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu> Author: Shivaram Venkataraman <shivaram.venkataraman@gmail.com> Author: Yu ISHIKAWA <yuu.ishikawa@gmail.com> Closes #8495 from shivaram/na-omit-fix.
* [SPARK-8505] [SPARKR] Add settings to kick `lint-r` from `./dev/run-test.py`Yu ISHIKAWA2015-08-275-12/+47
| | | | | | | | | | | | JoshRosen we'd like to check the SparkR source code with the `dev/lint-r` script on the Jenkins. I tried to incorporate the script into `dev/run-test.py`. Could you review it when you have time? shivaram I modified `dev/lint-r` and `dev/lint-r.R` to install lintr package into a local directory(`R/lib/`) and to exit with a lint status. Could you review it? - [[SPARK-8505] Add settings to kick `lint-r` from `./dev/run-test.py` - ASF JIRA](https://issues.apache.org/jira/browse/SPARK-8505) Author: Yu ISHIKAWA <yuu.ishikawa@gmail.com> Closes #7883 from yu-iskw/SPARK-8505.
* HOTFIX: Increase PRB timeoutPatrick Wendell2015-08-261-2/+2
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* [SPARK-10126] [PROJECT INFRA] Fix typo in release-build.sh which broke ↵Josh Rosen2015-08-201-2/+2
| | | | | | | | | | snapshot publishing for Scala 2.11 The current `release-build.sh` has a typo which breaks snapshot publication for Scala 2.11. We should change the Scala version to 2.11 and clean before building a 2.11 snapshot. Author: Josh Rosen <joshrosen@databricks.com> Closes #8325 from JoshRosen/fix-2.11-snapshots.
* [SPARK-1517] Refactor release scripts to facilitate nightly publishingPatrick Wendell2015-08-113-267/+400
| | | | | | | | | | | | | | | | | | This update contains some code changes to the release scripts that allow easier nightly publishing. I've been using these new scripts on Jenkins for cutting and publishing nightly snapshots for the last month or so, and it has been going well. I'd like to get them merged back upstream so this can be maintained by the community. The main changes are: 1. Separates the release tagging from various build possibilities for an already tagged release (`release-tag.sh` and `release-build.sh`). 2. Allow for injecting credentials through the environment, including GPG keys. This is then paired with secure key injection in Jenkins. 3. Support for copying build results to a remote directory, and also "rotating" results, e.g. the ability to keep the last N copies of binary or doc builds. I'm happy if anyone wants to take a look at this - it's not user facing but an internal utility used for generating releases. Author: Patrick Wendell <patrick@databricks.com> Closes #7411 from pwendell/release-script-updates and squashes the following commits: 74f9beb [Patrick Wendell] Moving maven build command to a variable 233ce85 [Patrick Wendell] [SPARK-1517] Refactor release scripts to facilitate nightly publishing
* [SPARK-9727] [STREAMING] [BUILD] Updated streaming kinesis SBT project name ↵Tathagata Das2015-08-111-2/+2
| | | | | | | | | | to be more consistent Author: Tathagata Das <tathagata.das1565@gmail.com> Closes #8092 from tdas/SPARK-9727 and squashes the following commits: b1b01fd [Tathagata Das] Updated streaming kinesis project name
* [SPARK-9810] [BUILD] Remove individual commit messages from the squash ↵Reynold Xin2015-08-111-5/+1
| | | | | | | | | | | | | | commit message For more information, please see the JIRA ticket and the associated dev list discussion. https://issues.apache.org/jira/browse/SPARK-9810 http://apache-spark-developers-list.1001551.n3.nabble.com/discuss-Removing-individual-commit-messages-from-the-squash-commit-message-td13295.html Author: Reynold Xin <rxin@databricks.com> Closes #8091 from rxin/SPARK-9810.
* [SPARK-5155] [PYSPARK] [STREAMING] Mqtt streaming support in PythonPrabeesh K2015-08-102-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This PR is based on #4229, thanks prabeesh. Closes #4229 Author: Prabeesh K <prabsmails@gmail.com> Author: zsxwing <zsxwing@gmail.com> Author: prabs <prabsmails@gmail.com> Author: Prabeesh K <prabeesh.k@namshi.com> Closes #7833 from zsxwing/pr4229 and squashes the following commits: 9570bec [zsxwing] Fix the variable name and check null in finally 4a9c79e [zsxwing] Fix pom.xml indentation abf5f18 [zsxwing] Merge branch 'master' into pr4229 935615c [zsxwing] Fix the flaky MQTT tests 47278c5 [zsxwing] Include the project class files 478f844 [zsxwing] Add unpack 5f8a1d4 [zsxwing] Make the maven build generate the test jar for Python MQTT tests 734db99 [zsxwing] Merge branch 'master' into pr4229 126608a [Prabeesh K] address the comments b90b709 [Prabeesh K] Merge pull request #1 from zsxwing/pr4229 d07f454 [zsxwing] Register StreamingListerner before starting StreamingContext; Revert unncessary changes; fix the python unit test a6747cb [Prabeesh K] wait for starting the receiver before publishing data 87fc677 [Prabeesh K] address the comments: 97244ec [zsxwing] Make sbt build the assembly test jar for streaming mqtt 80474d1 [Prabeesh K] fix 1f0cfe9 [Prabeesh K] python style fix e1ee016 [Prabeesh K] scala style fix a5a8f9f [Prabeesh K] added Python test 9767d82 [Prabeesh K] implemented Python-friendly class a11968b [Prabeesh K] fixed python style 795ec27 [Prabeesh K] address comments ee387ae [Prabeesh K] Fix assembly jar location of mqtt-assembly 3f4df12 [Prabeesh K] updated version b34c3c1 [prabs] adress comments 3aa7fff [prabs] Added Python streaming mqtt word count example b7d42ff [prabs] Mqtt streaming support in Python
* [SPARK-6485] [MLLIB] [PYTHON] Add ↵Mike Dusenberry2015-08-041-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | CoordinateMatrix/RowMatrix/IndexedRowMatrix to PySpark. This PR adds the RowMatrix, IndexedRowMatrix, and CoordinateMatrix distributed matrices to PySpark. Each distributed matrix class acts as a wrapper around the Scala/Java counterpart by maintaining a reference to the Java object. New distributed matrices can be created using factory methods added to DistributedMatrices, which creates the Java distributed matrix and then wraps it with the corresponding PySpark class. This design allows for simple conversion between the various distributed matrices, and lets us re-use the Scala code. Serialization between Python and Java is implemented using DataFrames as needed for IndexedRowMatrix and CoordinateMatrix for simplicity. Associated documentation and unit-tests have also been added. To facilitate code review, this PR implements access to the rows/entries as RDDs, the number of rows & columns, and conversions between the various distributed matrices (not including BlockMatrix), and does not implement the other linear algebra functions of the matrices, although this will be very simple to add now. Author: Mike Dusenberry <mwdusenb@us.ibm.com> Closes #7554 from dusenberrymw/SPARK-6485_Add_CoordinateMatrix_RowMatrix_IndexedMatrix_to_PySpark and squashes the following commits: bb039cb [Mike Dusenberry] Minor documentation update. b887c18 [Mike Dusenberry] Updating the matrix conversion logic again to make it even cleaner. Now, we allow the 'rows' parameter in the constructors to be either an RDD or the Java matrix object. If 'rows' is an RDD, we create a Java matrix object, wrap it, and then store that. If 'rows' is a Java matrix object of the correct type, we just wrap and store that directly. This is only for internal usage, and publicly, we still require 'rows' to be an RDD. We no longer store the 'rows' RDD, and instead just compute it from the Java object when needed. The point of this is that when we do matrix conversions, we do the conversion on the Scala/Java side, which returns a Java object, so we should use that directly, but exposing 'java_matrix' parameter in the public API is not ideal. This non-public feature of allowing 'rows' to be a Java matrix object is documented in the '__init__' constructor docstrings, which are not part of the generated public API, and doctests are also included. 7f0dcb6 [Mike Dusenberry] Updating module docstring. cfc1be5 [Mike Dusenberry] Use 'new SQLContext(matrix.rows.sparkContext)' rather than 'SQLContext.getOrCreate', as the later doesn't guarantee that the SparkContext will be the same as for the matrix.rows data. 687e345 [Mike Dusenberry] Improving conversion performance. This adds an optional 'java_matrix' parameter to the constructors, and pulls the conversion logic out into a '_create_from_java' function. Now, if the constructors are given a valid Java distributed matrix object as 'java_matrix', they will store those internally, rather than create a new one on the Scala/Java side. 3e50b6e [Mike Dusenberry] Moving the distributed matrices to pyspark.mllib.linalg.distributed. 308f197 [Mike Dusenberry] Using properties for better documentation. 1633f86 [Mike Dusenberry] Minor documentation cleanup. f0c13a7 [Mike Dusenberry] CoordinateMatrix should inherit from DistributedMatrix. ffdd724 [Mike Dusenberry] Updating doctests to make documentation cleaner. 3fd4016 [Mike Dusenberry] Updating docstrings. 27cd5f6 [Mike Dusenberry] Simplifying input conversions in the constructors for each distributed matrix. a409cf5 [Mike Dusenberry] Updating doctests to be less verbose by using lists instead of DenseVectors explicitly. d19b0ba [Mike Dusenberry] Updating code and documentation to note that a vector-like object (numpy array, list, etc.) can be used in place of explicit Vector object, and adding conversions when necessary to RowMatrix construction. 4bd756d [Mike Dusenberry] Adding param documentation to IndexedRow and MatrixEntry. c6bded5 [Mike Dusenberry] Move conversion logic from tuples to IndexedRow or MatrixEntry types from within the IndexedRowMatrix and CoordinateMatrix constructors to separate _convert_to_indexed_row and _convert_to_matrix_entry functions. 329638b [Mike Dusenberry] Moving the Experimental tag to the top of each docstring. 0be6826 [Mike Dusenberry] Simplifying doctests by removing duplicated rows/entries RDDs within the various tests. c0900df [Mike Dusenberry] Adding the colons that were accidentally not inserted. 4ad6819 [Mike Dusenberry] Documenting the and parameters. 3b854b9 [Mike Dusenberry] Minor updates to documentation. 10046e8 [Mike Dusenberry] Updating documentation to use class constructors instead of the removed DistributedMatrices factory methods. 119018d [Mike Dusenberry] Adding static methods to each of the distributed matrix classes to consolidate conversion logic. 4d7af86 [Mike Dusenberry] Adding type checks to the constructors. Although it is slightly verbose, it is better for the user to have a good error message than a cryptic stacktrace. 93b6a3d [Mike Dusenberry] Pulling the DistributedMatrices Python class out of this pull request. f6f3c68 [Mike Dusenberry] Pulling the DistributedMatrices Scala class out of this pull request. 6a3ecb7 [Mike Dusenberry] Updating pattern matching. 08f287b [Mike Dusenberry] Slight reformatting of the documentation. a245dc0 [Mike Dusenberry] Updating Python doctests for compatability between Python 2 & 3. Since Python 3 removed the idea of a separate 'long' type, all values that would have been outputted as a 'long' (ex: '4L') will now be treated as an 'int' and outputed as one (ex: '4'). The doctests now explicitly convert to ints so that both Python 2 and 3 will have the same output. This is fine since the values are all small, and thus can be easily represented as ints. 4d3a37e [Mike Dusenberry] Reformatting a few long Python doctest lines. 7e3ca16 [Mike Dusenberry] Fixing long lines. f721ead [Mike Dusenberry] Updating documentation for each of the distributed matrices. ab0e8b6 [Mike Dusenberry] Updating unit test to be more useful. dda2f89 [Mike Dusenberry] Added wrappers for the conversions between the various distributed matrices. Added logic to be able to access the rows/entries of the distributed matrices, which requires serialization through DataFrames for IndexedRowMatrix and CoordinateMatrix types. Added unit tests. 0cd7166 [Mike Dusenberry] Implemented the CoordinateMatrix API in PySpark, following the idea of the IndexedRowMatrix API, including using DataFrames for serialization. 3c369cb [Mike Dusenberry] Updating the architecture a bit to make conversions between the various distributed matrix types easier. The different distributed matrix classes are now only wrappers around the Java objects, and take the Java object as an argument during construction. This way, we can call for example on an , which returns a reference to a Java RowMatrix object, and then construct a PySpark RowMatrix object wrapped around the Java object. This is analogous to the behavior of PySpark RDDs and DataFrames. We now delegate creation of the various distributed matrices from scratch in PySpark to the factory methods on . 4bdd09b [Mike Dusenberry] Implemented the IndexedRowMatrix API in PySpark, following the idea of the RowMatrix API. Note that for the IndexedRowMatrix, we use DataFrames to serialize the data between Python and Scala/Java, so we accept PySpark RDDs, then convert to a DataFrame, then convert back to RDDs on the Scala/Java side before constructing the IndexedRowMatrix. 23bf1ec [Mike Dusenberry] Updating documentation to add PySpark RowMatrix. Inserting newline above doctest so that it renders properly in API docs. b194623 [Mike Dusenberry] Updating design to have a PySpark RowMatrix simply create and keep a reference to a wrapper over a Java RowMatrix. Updating DistributedMatrices factory methods to accept numRows and numCols with default values. Updating PySpark DistributedMatrices factory method to simply create a PySpark RowMatrix. Adding additional doctests for numRows and numCols parameters. bc2d220 [Mike Dusenberry] Adding unit tests for RowMatrix methods. d7e316f [Mike Dusenberry] Implemented the RowMatrix API in PySpark by doing the following: Added a DistributedMatrices class to contain factory methods for creating the various distributed matrices. Added a factory method for creating a RowMatrix from an RDD of Vectors. Added a createRowMatrix function to the PythonMLlibAPI to interface with the factory method. Added DistributedMatrix, DistributedMatrices, and RowMatrix classes to the pyspark.mllib.linalg api.
* [SPARK-8064] [SQL] Build against Hive 1.2.1Steve Loughran2015-08-031-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Cherry picked the parts of the initial SPARK-8064 WiP branch needed to get sql/hive to compile against hive 1.2.1. That's the ASF release packaged under org.apache.hive, not any fork. Tests not run yet: that's what the machines are for Author: Steve Loughran <stevel@hortonworks.com> Author: Cheng Lian <lian@databricks.com> Author: Michael Armbrust <michael@databricks.com> Author: Patrick Wendell <patrick@databricks.com> Closes #7191 from steveloughran/stevel/feature/SPARK-8064-hive-1.2-002 and squashes the following commits: 7556d85 [Cheng Lian] Updates .q files and corresponding golden files ef4af62 [Steve Loughran] Merge commit '6a92bb09f46a04d6cd8c41bdba3ecb727ebb9030' into stevel/feature/SPARK-8064-hive-1.2-002 6a92bb0 [Cheng Lian] Overrides HiveConf time vars dcbb391 [Cheng Lian] Adds com.twitter:parquet-hadoop-bundle:1.6.0 for Hive Parquet SerDe 0bbe475 [Steve Loughran] SPARK-8064 scalastyle rejects the standard Hadoop ASF license header... fdf759b [Steve Loughran] SPARK-8064 classpath dependency suite to be in sync with shading in final (?) hive-exec spark 7a6c727 [Steve Loughran] SPARK-8064 switch to second staging repo of the spark-hive artifacts. This one has the protobuf-shaded hive-exec jar 376c003 [Steve Loughran] SPARK-8064 purge duplicate protobuf declaration 2c74697 [Steve Loughran] SPARK-8064 switch to the protobuf shaded hive-exec jar with tests to chase it down cc44020 [Steve Loughran] SPARK-8064 remove hadoop.version from runtest.py, as profile will fix that automatically. 6901fa9 [Steve Loughran] SPARK-8064 explicit protobuf import da310dc [Michael Armbrust] Fixes for Hive tests. a775a75 [Steve Loughran] SPARK-8064 cherry-pick-incomplete 7404f34 [Patrick Wendell] Add spark-hive staging repo 832c164 [Steve Loughran] SPARK-8064 try to supress compiler warnings on Complex.java pasted-thrift-code 312c0d4 [Steve Loughran] SPARK-8064 maven/ivy dependency purge; calcite declaration needed fa5ae7b [Steve Loughran] HIVE-8064 fix up hive-thriftserver dependencies and cut back on evicted references in the hive- packages; this keeps mvn and ivy resolution compatible, as the reconciliation policy is "by hand" c188048 [Steve Loughran] SPARK-8064 manage the Hive depencencies to that -things that aren't needed are excluded -sql/hive built with ivy is in sync with the maven reconciliation policy, rather than latest-first 4c8be8d [Cheng Lian] WIP: Partial fix for Thrift server and CLI tests 314eb3c [Steve Loughran] SPARK-8064 deprecation warning noise in one of the tests 17b0341 [Steve Loughran] SPARK-8064 IDE-hinted cleanups of Complex.java to reduce compiler warnings. It's all autogenerated code, so still ugly. d029b92 [Steve Loughran] SPARK-8064 rely on unescaping to have already taken place, so go straight to map of serde options 23eca7e [Steve Loughran] HIVE-8064 handle raw and escaped property tokens 54d9b06 [Steve Loughran] SPARK-8064 fix compilation regression surfacing from rebase 0b12d5f [Steve Loughran] HIVE-8064 use subset of hive complex type whose types deserialize fce73b6 [Steve Loughran] SPARK-8064 poms rely implicitly on the version of kryo chill provides fd3aa5d [Steve Loughran] SPARK-8064 version of hive to d/l from ivy is 1.2.1 dc73ece [Steve Loughran] SPARK-8064 revert to master's determinstic pushdown strategy d3c1e4a [Steve Loughran] SPARK-8064 purge UnionType 051cc21 [Steve Loughran] SPARK-8064 switch to an unshaded version of hive-exec-core, which must have been built with Kryo 2.21. This currently looks for a (locally built) version 1.2.1.spark 6684c60 [Steve Loughran] SPARK-8064 ignore RTE raised in blocking process.exitValue() call e6121e5 [Steve Loughran] SPARK-8064 address review comments aa43dc6 [Steve Loughran] SPARK-8064 more robust teardown on JavaMetastoreDatasourcesSuite f2bff01 [Steve Loughran] SPARK-8064 better takeup of asynchronously caught error text 8b1ef38 [Steve Loughran] SPARK-8064: on failures executing spark-submit in HiveSparkSubmitSuite, print command line and all logged output. 5a9ce6b [Steve Loughran] SPARK-8064 add explicit reason for kv split failure, rather than array OOB. *does not address the issue* 642b63a [Steve Loughran] SPARK-8064 reinstate something cut briefly during rebasing 97194dc [Steve Loughran] SPARK-8064 add extra logging to the YarnClusterSuite classpath test. There should be no reason why this is failing on jenkins, but as it is (and presumably its CP-related), improve the logging including any exception raised. 335357f [Steve Loughran] SPARK-8064 fail fast on thrive process spawning tests on exit codes and/or error string patterns seen in log. 3ed872f [Steve Loughran] SPARK-8064 rename field double to dbl bca55e5 [Steve Loughran] SPARK-8064 missed one of the `date` escapes 41d6479 [Steve Loughran] SPARK-8064 wrap tests with withTable() calls to avoid table-exists exceptions 2bc29a4 [Steve Loughran] SPARK-8064 ParquetSuites to escape `date` field name 1ab9bc4 [Steve Loughran] SPARK-8064 TestHive to use sered2.thrift.test.Complex bf3a249 [Steve Loughran] SPARK-8064: more resubmit than fix; tighten startup timeout to 60s. Still no obvious reason why jersey server code in spark-assembly isn't being picked up -it hasn't been shaded c829b8f [Steve Loughran] SPARK-8064: reinstate yarn-rm-server dependencies to hive-exec to ensure that jersey server is on classpath on hadoop versions < 2.6 0b0f738 [Steve Loughran] SPARK-8064: thrift server startup to fail fast on any exception in the main thread 13abaf1 [Steve Loughran] SPARK-8064 Hive compatibilty tests sin sync with explain/show output from Hive 1.2.1 d14d5ea [Steve Loughran] SPARK-8064: DATE is now a predicate; you can't use it as a field in select ops 26eef1c [Steve Loughran] SPARK-8064: HIVE-9039 renamed TOK_UNION => TOK_UNIONALL while adding TOK_UNIONDISTINCT 3d64523 [Steve Loughran] SPARK-8064 improve diagns on uknown token; fix scalastyle failure d0360f6 [Steve Loughran] SPARK-8064: delicate merge in of the branch vanzin/hive-1.1 1126e5a [Steve Loughran] SPARK-8064: name of unrecognized file format wasn't appearing in error text 8cb09c4 [Steve Loughran] SPARK-8064: test resilience/assertion improvements. Independent of the rest of the work; can be backported to earlier versions dec12cb [Steve Loughran] SPARK-8064: when a CLI suite test fails include the full output text in the raised exception; this ensures that the stdout/stderr is included in jenkins reports, so it becomes possible to diagnose the cause. 463a670 [Steve Loughran] SPARK-8064 run-tests.py adds a hadoop-2.6 profile, and changes info messages to say "w/Hive 1.2.1" in console output 2531099 [Steve Loughran] SPARK-8064 successful attempt to get rid of pentaho as a transitive dependency of hive-exec 1d59100 [Steve Loughran] SPARK-8064 (unsuccessful) attempt to get rid of pentaho as a transitive dependency of hive-exec 75733fc [Steve Loughran] SPARK-8064 change thrift binary startup message to "Starting ThriftBinaryCLIService on port" 3ebc279 [Steve Loughran] SPARK-8064 move strings used to check for http/bin thrift services up into constants c80979d [Steve Loughran] SPARK-8064: SparkSQLCLIDriver drops remote mode support. CLISuite Tests pass instead of timing out: undetected regression? 27e8370 [Steve Loughran] SPARK-8064 fix some style & IDE warnings 00e50d6 [Steve Loughran] SPARK-8064 stop excluding hive shims from dependency (commented out , for now) cb4f142 [Steve Loughran] SPARK-8054 cut pentaho dependency from calcite f7aa9cb [Steve Loughran] SPARK-8064 everything compiles with some commenting and moving of classes into a hive package 6c310b4 [Steve Loughran] SPARK-8064 subclass Hive ServerOptionsProcessor to make it public again f61a675 [Steve Loughran] SPARK-8064 thrift server switched to Hive 1.2.1, though it doesn't compile everywhere 4890b9d [Steve Loughran] SPARK-8064, build against Hive 1.2.1
* [SPARK-9507] [BUILD] Remove dependency reduced POM hack now that shade ↵Sean Owen2015-07-311-2/+2
| | | | | | | | | | | | | | | | | | plugin is updated Update to shade plugin 2.4.1, which removes the need for the dependency-reduced-POM workaround and the 'release' profile. Fix management of shade plugin version so children inherit it; bump assembly plugin version while here See https://issues.apache.org/jira/browse/SPARK-8819 I verified that `mvn clean package -DskipTests` works with Maven 3.3.3. pwendell are you up for trying this for the 1.5.0 release? Author: Sean Owen <sowen@cloudera.com> Closes #7826 from srowen/SPARK-9507 and squashes the following commits: e0b0fd2 [Sean Owen] Update to shade plugin 2.4.1, which removes the need for the dependency-reduced-POM workaround and the 'release' profile. Fix management of shade plugin version so children inherit it; bump assembly plugin version while here
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-06 06:54:04 +0000